Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99871 * 2 1 4 4 N 1.46501 * 109.47095 * 125.00202 * 3 2 1 5 5 C 1.46767 * 124.34784 * 89.99792 * 4 3 2 6 6 C 1.54477 * 105.55064 * 197.07831 * 5 4 3 7 7 C 1.54633 * 101.76282 * 334.54250 * 6 5 4 8 8 H 1.09007 * 110.48157 * 143.47679 * 7 6 5 9 9 N 1.46895 * 110.48709 * 265.98154 * 7 6 5 10 10 C 1.46902 * 111.00481 * 297.50454 * 9 7 6 11 11 C 1.46905 * 111.00310 * 173.54151 * 9 7 6 12 12 C 1.52998 * 109.47221 * 190.00312 * 11 9 7 13 13 C 1.53000 * 109.46816 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47073 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99851 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99913 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00021 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00089 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46953 * 90.00451 * 18 16 14 20 20 H 1.48500 * 109.46909 * 210.00244 * 18 16 14 21 21 H 1.48493 * 109.47156 * 330.00220 * 18 16 14 22 22 C 1.34621 * 124.46779 * 270.02816 * 4 3 2 23 23 O 1.21277 * 124.91037 * 359.54971 * 22 4 3 24 24 H 1.07994 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.99641 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99729 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47264 * 5.00545 * 3 2 1 28 28 H 1.08998 * 109.47242 * 245.00454 * 3 2 1 29 29 H 1.09004 * 110.24232 * 78.03896 * 5 4 3 30 30 H 1.08996 * 110.24437 * 316.12673 * 5 4 3 31 31 H 1.09000 * 110.96897 * 92.66008 * 6 5 4 32 32 H 1.08995 * 110.97198 * 216.38685 * 6 5 4 33 33 H 1.08989 * 109.47097 * 65.58472 * 10 9 7 34 34 H 1.08997 * 109.47006 * 185.59206 * 10 9 7 35 35 H 1.09000 * 109.46345 * 305.58261 * 10 9 7 36 36 H 1.08998 * 109.46798 * 310.00936 * 11 9 7 37 37 H 1.09004 * 109.46542 * 70.00654 * 11 9 7 38 38 H 1.08994 * 109.47065 * 300.00284 * 12 11 9 39 39 H 1.08997 * 109.46716 * 60.00784 * 12 11 9 40 40 H 1.08997 * 109.47523 * 300.00535 * 13 12 11 41 41 H 1.09004 * 109.46743 * 60.00467 * 13 12 11 42 42 H 0.97000 * 119.99786 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3792 0.8507 1.0759 6 6 4.8130 0.6665 2.5470 7 6 3.8829 1.6631 3.2770 8 1 3.5756 1.2610 4.2425 9 7 4.5529 2.9588 3.4509 10 6 5.7493 2.8241 4.2926 11 6 3.6298 3.9589 4.0039 12 6 4.2786 5.3430 3.9386 13 6 3.3169 6.3845 4.5140 14 6 3.9556 7.7480 4.4492 15 1 4.9480 7.8603 4.0382 16 6 3.2730 8.8518 4.9144 17 7 3.8306 10.0417 4.8583 18 14 1.5562 8.6575 5.6246 19 1 1.6501 8.4090 7.0856 20 1 0.7771 9.8983 5.3826 21 1 0.8766 7.5108 4.9701 22 6 2.6901 1.7999 2.3566 23 8 1.6159 2.2635 2.6758 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 5.0149 1.5874 0.5847 30 1 4.4271 -0.1009 0.5465 31 1 4.6308 -0.3544 2.8825 32 1 5.8598 0.9384 2.6821 33 1 6.4879 2.2093 3.7785 34 1 6.1696 3.8108 4.4870 35 1 5.4777 2.3525 5.2370 36 1 2.7073 3.9621 3.4233 37 1 3.4053 3.7114 5.0415 38 1 5.2010 5.3396 4.5192 39 1 4.5031 5.5903 2.9011 40 1 2.3946 6.3877 3.9331 41 1 3.0919 6.1373 5.5515 42 1 3.3502 10.8183 5.1853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281386098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = -30.732901 kcal Electronic energy + Delta-G solvation = -20556.145689 eV Core-core repulsion = 17535.827993 eV Total energy + Delta-G solvation = -3020.317696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71834 -38.46941 -37.59692 -36.00170 -35.09932 -33.55010 -31.59550 -29.07684 -28.68299 -27.02817 -26.12993 -23.62112 -22.18498 -21.64416 -21.02671 -20.32896 -18.91950 -17.96308 -17.76000 -17.03651 -16.37454 -16.19455 -15.64077 -15.51062 -15.20726 -15.16207 -14.74749 -14.49532 -14.24634 -14.11820 -13.83376 -13.65742 -13.37125 -12.91086 -12.77703 -12.49626 -12.44467 -12.39987 -12.25999 -12.06830 -11.85063 -11.53086 -11.48032 -11.24959 -10.88456 -10.78986 -10.37099 -9.71387 -9.39572 -8.32722 -6.36121 1.16720 1.30842 1.33440 1.40029 1.46581 2.20791 2.32992 2.95351 3.02121 3.28861 3.58393 3.91922 4.01669 4.06352 4.12574 4.19724 4.32324 4.37636 4.47412 4.58011 4.61042 4.66993 4.71664 4.74891 4.78208 4.92295 4.95194 4.96301 5.06818 5.14491 5.21751 5.46945 5.53248 5.57136 5.61151 5.62758 5.75470 5.94123 6.00472 6.14514 6.26376 6.70759 7.11625 7.28508 8.83987 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.004403 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.322546 B = 6357.360349 C = 7184.740191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.146 3.854 4 N -0.608 5.608 5 C 0.104 3.896 6 C -0.115 4.115 7 C 0.045 3.955 8 H 0.071 0.929 9 N -0.527 5.527 10 C 0.019 3.981 11 C 0.057 3.943 12 C -0.081 4.081 13 C -0.010 4.010 14 C -0.530 4.530 15 H 0.037 0.963 16 C 0.008 3.992 17 N -0.948 5.948 18 Si 0.946 3.054 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.259 1.259 22 C 0.514 3.486 23 O -0.577 6.577 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.007 0.993 41 H 0.015 0.985 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -27.603 -8.900 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.197 4.197 3 C 0.025 3.975 4 N -0.340 5.340 5 C -0.017 4.017 6 C -0.152 4.152 7 C -0.066 4.066 8 H 0.088 0.912 9 N -0.253 5.253 10 C -0.128 4.128 11 C -0.071 4.071 12 C -0.119 4.119 13 C -0.048 4.048 14 C -0.568 4.568 15 H 0.055 0.945 16 C -0.189 4.189 17 N -0.589 5.589 18 Si 0.770 3.230 19 H -0.187 1.187 20 H -0.204 1.204 21 H -0.183 1.183 22 C 0.302 3.698 23 O -0.457 6.457 24 H 0.104 0.896 25 H 0.134 0.866 26 H 0.149 0.851 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.025 0.975 41 H 0.034 0.966 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.156 -27.034 -9.249 28.596 hybrid contribution -1.212 0.605 1.167 1.788 sum -0.056 -26.429 -8.082 27.638 Atomic orbital electron populations 1.24064 0.96309 1.02438 0.98897 1.23340 0.96276 0.98803 1.01260 1.20586 0.92027 0.95772 0.89140 1.48408 1.14318 1.61276 1.09997 1.22330 0.79827 1.01338 0.98190 1.22815 1.00883 0.98479 0.93069 1.22479 0.93893 0.92159 0.98118 0.91166 1.61996 1.07428 1.05244 1.50639 1.22609 0.91959 1.03055 0.95170 1.22158 0.95615 0.91970 0.97353 1.21250 0.98332 0.92129 1.00227 1.19482 0.95686 0.93837 0.95835 1.21443 1.02579 0.92340 1.40429 0.94513 1.25943 1.02402 0.94712 0.95836 1.70053 1.40148 0.99705 1.48969 0.85717 0.79625 0.78099 0.79595 1.18690 1.20402 1.18311 1.21247 0.88320 0.75874 0.84402 1.90681 1.28612 1.47062 1.79300 0.89604 0.86571 0.85112 0.92381 0.86710 0.90237 0.87187 0.87388 0.86522 0.87859 0.91554 0.94776 0.92177 0.95238 0.92132 0.93444 0.97473 0.96618 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 14.32 67.78 0.97 -2.12 16 2 C -0.18 -2.89 9.85 25.64 0.25 -2.64 16 3 C 0.15 2.79 6.38 85.63 0.55 3.33 16 4 N -0.61 -13.00 2.92 -822.03 -2.40 -15.40 16 5 C 0.10 1.31 7.34 86.83 0.64 1.95 16 6 C -0.11 -1.40 6.67 31.65 0.21 -1.19 16 7 C 0.05 1.06 2.64 44.91 0.12 1.18 16 8 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 9 N -0.53 -14.73 4.64 -897.08 -4.16 -18.89 16 10 C 0.02 0.42 9.16 127.69 1.17 1.59 16 11 C 0.06 2.11 4.77 86.30 0.41 2.52 16 12 C -0.08 -3.51 5.10 30.59 0.16 -3.35 16 13 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 14 C -0.53 -32.41 9.66 25.60 0.25 -32.16 16 15 H 0.04 2.43 7.99 -2.91 -0.02 2.40 16 16 C 0.01 0.50 5.47 84.65 0.46 0.96 16 17 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 18 Si 0.95 47.30 27.47 68.60 1.88 49.19 16 19 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.26 -12.64 6.54 99.48 0.65 -11.99 16 22 C 0.51 15.26 6.87 87.87 0.60 15.86 16 23 O -0.58 -22.96 15.92 -3.02 -0.05 -23.01 16 24 H 0.09 1.70 7.84 -2.91 -0.02 1.67 16 25 H 0.12 1.55 8.06 -2.91 -0.02 1.52 16 26 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 27 H 0.06 1.44 7.58 -2.39 -0.02 1.43 16 28 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.12 1.06 6.04 -2.39 -0.01 1.05 16 33 H 0.10 1.51 6.33 -2.39 -0.02 1.50 16 34 H 0.07 1.69 6.10 -2.39 -0.01 1.68 16 35 H 0.03 0.70 8.13 -2.39 -0.02 0.68 16 36 H 0.06 2.55 5.68 -2.39 -0.01 2.54 16 37 H 0.03 1.08 8.12 -2.38 -0.02 1.06 16 38 H 0.06 2.49 6.37 -2.39 -0.02 2.48 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 41 H 0.02 0.78 7.57 -2.38 -0.02 0.76 16 42 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -78.87 336.15 2.40 -76.47 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.92 Total: 7.26 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 5.91 Total: -14.49 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -6.27 Total: -95.42 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.88 Total: 49.19 kcal Total: -78.87 2.40 -76.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281386098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.736 kcal (2) G-P(sol) polarization free energy of solvation -78.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds