Wall clock time and date at job start Mon Mar 30 2020 01:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46495 * 109.47260 * 124.99791 * 3 2 1 5 5 C 1.46762 * 124.34709 * 89.99968 * 4 3 2 6 6 C 1.54483 * 105.47311 * 197.01692 * 5 4 3 7 7 C 1.54632 * 101.76144 * 334.58472 * 6 5 4 8 8 H 1.09003 * 110.48409 * 266.11429 * 7 6 5 9 9 N 1.46909 * 110.48312 * 143.47682 * 7 6 5 10 10 C 1.46898 * 110.99791 * 298.95152 * 9 7 6 11 11 C 1.46902 * 110.99778 * 174.99805 * 9 7 6 12 12 C 1.52997 * 109.46701 * 189.99968 * 11 9 7 13 13 C 1.53003 * 109.46933 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47037 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00504 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00088 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00545 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99717 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47296 * 89.99544 * 18 16 14 20 20 H 1.48509 * 109.46749 * 209.99832 * 18 16 14 21 21 H 1.48503 * 109.46746 * 329.99111 * 18 16 14 22 22 C 1.34422 * 124.35009 * 269.70249 * 4 3 2 23 23 O 1.21281 * 124.93957 * 359.57294 * 22 4 3 24 24 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 26 26 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 28 28 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 29 29 H 1.09000 * 110.24641 * 316.02017 * 5 4 3 30 30 H 1.09004 * 110.24588 * 78.01663 * 5 4 3 31 31 H 1.08993 * 110.96963 * 92.70437 * 6 5 4 32 32 H 1.08999 * 110.96855 * 216.42754 * 6 5 4 33 33 H 1.09004 * 109.47405 * 60.00084 * 10 9 7 34 34 H 1.08995 * 109.47033 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47153 * 300.00074 * 10 9 7 36 36 H 1.09003 * 109.46973 * 309.99829 * 11 9 7 37 37 H 1.08994 * 109.47052 * 70.00120 * 11 9 7 38 38 H 1.09003 * 109.47293 * 299.99665 * 12 11 9 39 39 H 1.08994 * 109.47243 * 60.00269 * 12 11 9 40 40 H 1.09003 * 109.46630 * 299.99792 * 13 12 11 41 41 H 1.08994 * 109.47164 * 59.99941 * 13 12 11 42 42 H 0.96998 * 120.00668 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3791 0.8509 1.0759 6 6 4.8115 0.6689 2.5478 7 6 3.8799 1.6657 3.2755 8 1 4.3754 2.6284 3.4017 9 7 3.4648 1.1252 4.5770 10 6 2.7195 -0.1299 4.4122 11 6 2.6766 2.1107 5.3291 12 6 2.4756 1.6158 6.7628 13 6 1.6542 2.6419 7.5460 14 6 1.4556 2.1542 8.9580 15 1 1.8739 1.2074 9.2662 16 6 0.7409 2.9172 9.8568 17 7 0.5681 2.4919 11.0892 18 14 0.0181 4.5553 9.3241 19 1 -1.3527 4.3426 8.7942 20 1 -0.0387 5.4738 10.4897 21 1 0.8713 5.1518 8.2650 22 6 2.6898 1.8057 2.3521 23 8 1.6168 2.2746 2.6679 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0044 26 1 1.8501 -0.9353 -0.0004 27 1 2.6213 1.4027 -0.9314 28 1 1.3586 2.1317 0.0895 29 1 4.4268 -0.1017 0.5482 30 1 5.0148 1.5874 0.5844 31 1 4.6298 -0.3517 2.8844 32 1 5.8580 0.9417 2.6836 33 1 3.3516 -0.8651 3.9139 34 1 2.4239 -0.5081 5.3908 35 1 1.8298 0.0523 3.8096 36 1 3.2055 3.0636 5.3444 37 1 1.7061 2.2414 4.8504 38 1 1.9467 0.6628 6.7475 39 1 3.4461 1.4851 7.2414 40 1 2.1827 3.5950 7.5613 41 1 0.6837 2.7722 7.0672 42 1 0.0650 3.0286 11.7215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281386100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:23 Heat of formation + Delta-G solvation = -6.053326 kcal Electronic energy + Delta-G solvation = -20637.161795 eV Core-core repulsion = 17617.914285 eV Total energy + Delta-G solvation = -3019.247510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.94777 -37.16235 -36.59239 -34.83780 -33.46178 -31.71263 -30.52299 -27.65017 -27.36133 -26.46345 -24.67649 -21.96355 -21.46181 -20.23641 -19.81361 -19.31393 -17.02988 -16.94145 -16.58799 -16.02605 -15.19897 -14.87369 -14.63590 -14.14997 -14.05407 -13.85924 -13.73268 -13.44480 -12.73028 -12.65026 -12.57526 -12.15175 -11.96357 -11.77275 -11.60594 -11.53365 -11.44729 -10.96151 -10.84860 -10.58460 -10.28721 -9.85426 -9.76587 -9.56601 -9.48120 -9.07082 -8.96003 -8.44815 -8.02253 -5.95929 -3.92963 1.83927 2.49820 2.94236 3.38710 3.45072 3.51085 3.89430 4.26318 4.34818 4.54049 4.58692 4.71441 4.77523 4.84872 4.99018 5.15372 5.22254 5.37160 5.38580 5.40934 5.55984 5.61037 5.71693 5.74321 5.84125 6.05757 6.14690 6.25033 6.27377 6.38419 6.42021 6.64369 6.64995 6.92681 6.99445 7.18888 7.24753 7.46695 7.57916 7.89648 8.08531 8.63965 9.09681 9.67454 11.17675 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026361 B = 0.004065 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.902260 B = 6886.234226 C = 7299.563044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.182 4.182 3 C 0.152 3.848 4 N -0.621 5.621 5 C 0.102 3.898 6 C -0.127 4.127 7 C 0.051 3.949 8 H 0.116 0.884 9 N -0.511 5.511 10 C 0.012 3.988 11 C 0.043 3.957 12 C -0.095 4.095 13 C -0.013 4.013 14 C -0.516 4.516 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.906 5.906 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.489 3.511 23 O -0.517 6.517 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.015 0.985 41 H 0.010 0.990 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 -4.983 -26.123 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C 0.031 3.969 4 N -0.356 5.356 5 C -0.021 4.021 6 C -0.165 4.165 7 C -0.061 4.061 8 H 0.134 0.866 9 N -0.233 5.233 10 C -0.136 4.136 11 C -0.084 4.084 12 C -0.133 4.133 13 C -0.051 4.051 14 C -0.554 4.554 15 H 0.089 0.911 16 C -0.135 4.135 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 C 0.275 3.725 23 O -0.392 6.392 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.129 -4.766 -25.545 27.227 hybrid contribution -1.208 0.927 -0.720 1.684 sum 6.921 -3.839 -26.265 27.431 Atomic orbital electron populations 1.23928 0.95904 1.02243 0.98350 1.23240 0.96355 0.98692 1.01814 1.20435 0.91992 0.96011 0.88499 1.48423 1.12876 1.62920 1.11413 1.22119 0.81925 0.99927 0.98120 1.22761 1.00354 1.00973 0.92374 1.22653 0.93950 1.00518 0.89014 0.86603 1.62454 1.42857 1.05255 1.12764 1.22567 0.96288 0.91932 1.02782 1.22505 0.96666 0.93907 0.95292 1.21468 1.00609 0.99544 0.91702 1.19545 0.94776 0.94930 0.95872 1.21158 1.33667 1.06962 0.93608 0.91051 1.25024 0.95848 0.97882 0.94784 1.69918 1.41791 1.38593 1.04293 0.86784 0.79963 0.84351 0.78244 1.20358 1.21459 1.18966 1.22231 0.90314 0.76659 0.83323 1.90734 1.26372 1.44553 1.77492 0.88199 0.88284 0.87307 0.89746 0.89757 0.90482 0.90990 0.89070 0.88634 0.91734 0.89943 0.95387 0.91456 0.92720 0.92963 0.92143 0.96653 0.97191 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 14.32 29.01 0.42 -1.11 16 2 C -0.18 -1.62 9.85 -36.03 -0.35 -1.98 16 3 C 0.15 1.36 6.37 -5.20 -0.03 1.33 16 4 N -0.62 -6.34 2.92 -173.78 -0.51 -6.84 16 5 C 0.10 0.69 7.35 -3.12 -0.02 0.67 16 6 C -0.13 -1.01 6.67 -25.10 -0.17 -1.17 16 7 C 0.05 0.63 3.01 -67.72 -0.20 0.42 16 8 H 0.12 1.34 8.02 -51.93 -0.42 0.92 16 9 N -0.51 -7.69 4.78 -234.90 -1.12 -8.81 16 10 C 0.01 0.18 8.78 60.06 0.53 0.70 16 11 C 0.04 0.79 4.54 -3.82 -0.02 0.78 16 12 C -0.10 -2.04 5.08 -26.73 -0.14 -2.17 16 13 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 14 C -0.52 -15.41 9.66 -34.44 -0.33 -15.75 16 15 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.91 -28.90 13.96 55.43 0.77 -28.13 16 18 Si 0.88 22.82 27.47 -169.99 -4.67 18.15 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 22 C 0.49 6.81 6.04 -10.86 -0.07 6.75 16 23 O -0.52 -9.51 15.03 5.56 0.08 -9.43 16 24 H 0.10 0.80 8.06 -52.48 -0.42 0.37 16 25 H 0.10 0.93 7.84 -52.49 -0.41 0.52 16 26 H 0.11 0.87 8.06 -52.49 -0.42 0.44 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.88 7.57 -51.93 -0.39 0.48 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.75 5.86 -51.93 -0.30 0.44 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.74 6.05 -51.93 -0.31 0.43 16 34 H 0.08 1.26 6.30 -51.93 -0.33 0.94 16 35 H 0.03 0.44 6.73 -51.93 -0.35 0.09 16 36 H 0.07 1.21 7.99 -51.93 -0.42 0.79 16 37 H 0.05 1.12 6.24 -51.93 -0.32 0.80 16 38 H 0.05 1.12 6.47 -51.93 -0.34 0.78 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 42 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -34.91 333.06 -7.93 -42.84 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.90 Total: -2.70 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -0.60 Total: -10.11 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.86 Total: -43.78 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.67 Total: 18.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.91 -7.93 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281386100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.788 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds