Wall clock time and date at job start Mon Mar 30 2020 01:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46495 * 109.47260 * 124.99791 * 3 2 1 5 5 C 1.46762 * 124.34709 * 89.99968 * 4 3 2 6 6 C 1.54483 * 105.47311 * 197.01692 * 5 4 3 7 7 C 1.54632 * 101.76144 * 334.58472 * 6 5 4 8 8 H 1.09003 * 110.48409 * 266.11429 * 7 6 5 9 9 N 1.46909 * 110.48312 * 143.47682 * 7 6 5 10 10 C 1.46898 * 110.99791 * 298.95152 * 9 7 6 11 11 C 1.46902 * 110.99778 * 174.99805 * 9 7 6 12 12 C 1.52997 * 109.46701 * 189.99968 * 11 9 7 13 13 C 1.53003 * 109.46933 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47037 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00504 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00088 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00545 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99717 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47296 * 89.99544 * 18 16 14 20 20 H 1.48509 * 109.46749 * 209.99832 * 18 16 14 21 21 H 1.48503 * 109.46746 * 329.99111 * 18 16 14 22 22 C 1.34422 * 124.35009 * 269.70249 * 4 3 2 23 23 O 1.21281 * 124.93957 * 359.57294 * 22 4 3 24 24 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 26 26 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 28 28 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 29 29 H 1.09000 * 110.24641 * 316.02017 * 5 4 3 30 30 H 1.09004 * 110.24588 * 78.01663 * 5 4 3 31 31 H 1.08993 * 110.96963 * 92.70437 * 6 5 4 32 32 H 1.08999 * 110.96855 * 216.42754 * 6 5 4 33 33 H 1.09004 * 109.47405 * 60.00084 * 10 9 7 34 34 H 1.08995 * 109.47033 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47153 * 300.00074 * 10 9 7 36 36 H 1.09003 * 109.46973 * 309.99829 * 11 9 7 37 37 H 1.08994 * 109.47052 * 70.00120 * 11 9 7 38 38 H 1.09003 * 109.47293 * 299.99665 * 12 11 9 39 39 H 1.08994 * 109.47243 * 60.00269 * 12 11 9 40 40 H 1.09003 * 109.46630 * 299.99792 * 13 12 11 41 41 H 1.08994 * 109.47164 * 59.99941 * 13 12 11 42 42 H 0.96998 * 120.00668 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3791 0.8509 1.0759 6 6 4.8115 0.6689 2.5478 7 6 3.8799 1.6657 3.2755 8 1 4.3754 2.6284 3.4017 9 7 3.4648 1.1252 4.5770 10 6 2.7195 -0.1299 4.4122 11 6 2.6766 2.1107 5.3291 12 6 2.4756 1.6158 6.7628 13 6 1.6542 2.6419 7.5460 14 6 1.4556 2.1542 8.9580 15 1 1.8739 1.2074 9.2662 16 6 0.7409 2.9172 9.8568 17 7 0.5681 2.4919 11.0892 18 14 0.0181 4.5553 9.3241 19 1 -1.3527 4.3426 8.7942 20 1 -0.0387 5.4738 10.4897 21 1 0.8713 5.1518 8.2650 22 6 2.6898 1.8057 2.3521 23 8 1.6168 2.2746 2.6679 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0044 26 1 1.8501 -0.9353 -0.0004 27 1 2.6213 1.4027 -0.9314 28 1 1.3586 2.1317 0.0895 29 1 4.4268 -0.1017 0.5482 30 1 5.0148 1.5874 0.5844 31 1 4.6298 -0.3517 2.8844 32 1 5.8580 0.9417 2.6836 33 1 3.3516 -0.8651 3.9139 34 1 2.4239 -0.5081 5.3908 35 1 1.8298 0.0523 3.8096 36 1 3.2055 3.0636 5.3444 37 1 1.7061 2.2414 4.8504 38 1 1.9467 0.6628 6.7475 39 1 3.4461 1.4851 7.2414 40 1 2.1827 3.5950 7.5613 41 1 0.6837 2.7722 7.0672 42 1 0.0650 3.0286 11.7215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281386100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:22 Heat of formation + Delta-G solvation = -30.564299 kcal Electronic energy + Delta-G solvation = -20638.224670 eV Core-core repulsion = 17617.914285 eV Total energy + Delta-G solvation = -3020.310385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.88596 -38.34377 -37.59979 -35.99979 -35.12176 -33.54030 -31.57223 -29.07295 -28.57519 -27.30832 -26.05424 -23.52036 -22.37534 -21.61413 -21.01130 -20.23530 -18.89090 -17.95239 -17.78997 -17.04370 -16.43641 -16.20517 -15.84022 -15.47007 -15.13991 -15.10979 -14.88096 -14.75635 -14.28402 -13.83950 -13.70438 -13.44597 -13.26073 -12.91492 -12.80662 -12.67596 -12.58146 -12.37239 -12.30202 -11.82916 -11.82123 -11.49403 -11.42224 -11.34426 -11.19634 -10.77962 -10.50204 -9.75800 -9.23427 -8.31224 -6.34791 1.11990 1.33471 1.34200 1.47497 1.49439 2.18959 2.34438 2.79665 3.03724 3.44494 3.61308 3.89815 3.95471 4.09591 4.12369 4.14891 4.30255 4.35332 4.40150 4.49974 4.61420 4.67244 4.69436 4.73872 4.80693 4.90834 4.92136 4.98615 5.09388 5.16453 5.21199 5.48608 5.52912 5.56664 5.58018 5.64327 5.71119 5.93162 5.97704 6.10818 6.28060 6.72299 7.12186 7.29702 8.85636 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026361 B = 0.004065 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.902260 B = 6886.234226 C = 7299.563044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.180 4.180 3 C 0.147 3.853 4 N -0.613 5.613 5 C 0.101 3.899 6 C -0.115 4.115 7 C 0.044 3.956 8 H 0.122 0.878 9 N -0.510 5.510 10 C 0.018 3.982 11 C 0.058 3.942 12 C -0.084 4.084 13 C -0.010 4.010 14 C -0.531 4.531 15 H 0.034 0.966 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.948 3.052 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.250 1.250 22 C 0.477 3.523 23 O -0.575 6.575 24 H 0.110 0.890 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.020 0.980 41 H 0.007 0.993 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.251 -4.793 -28.818 30.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.199 4.199 3 C 0.026 3.974 4 N -0.347 5.347 5 C -0.021 4.021 6 C -0.153 4.153 7 C -0.068 4.068 8 H 0.140 0.860 9 N -0.232 5.232 10 C -0.130 4.130 11 C -0.070 4.070 12 C -0.122 4.122 13 C -0.048 4.048 14 C -0.569 4.569 15 H 0.052 0.948 16 C -0.190 4.190 17 N -0.590 5.590 18 Si 0.771 3.229 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.174 1.174 22 C 0.264 3.736 23 O -0.454 6.454 24 H 0.128 0.872 25 H 0.106 0.894 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.025 0.975 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.029 -4.611 -28.291 30.368 hybrid contribution -1.731 0.768 0.093 1.896 sum 8.298 -3.843 -28.198 29.643 Atomic orbital electron populations 1.24040 0.96460 1.02318 0.99158 1.23384 0.96261 0.99239 1.01043 1.20581 0.92102 0.95293 0.89405 1.48538 1.14437 1.61269 1.10416 1.22446 0.79860 1.02050 0.97717 1.22819 1.00722 0.99530 0.92219 1.22877 0.94168 1.02313 0.87471 0.86005 1.62399 1.41546 1.04642 1.14662 1.22541 0.96263 0.92375 1.01823 1.22158 0.96334 0.94954 0.93516 1.21274 0.99508 0.98104 0.93360 1.19479 0.95389 0.96099 0.93808 1.21467 1.33568 1.05847 0.96007 0.94756 1.25972 0.96222 1.02169 0.94666 1.70054 1.42824 1.40508 1.05663 0.85689 0.79372 0.79285 0.78505 1.19566 1.20268 1.17386 1.22538 0.89873 0.76402 0.84776 1.90702 1.28596 1.47380 1.78767 0.87194 0.89375 0.85683 0.86186 0.92042 0.87727 0.88353 0.89022 0.85914 0.88286 0.91622 0.97381 0.90933 0.94981 0.93724 0.92370 0.96119 0.97480 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 14.32 67.78 0.97 -2.29 16 2 C -0.18 -2.90 9.85 25.64 0.25 -2.65 16 3 C 0.15 2.34 6.37 85.63 0.55 2.89 16 4 N -0.61 -10.94 2.92 -822.31 -2.40 -13.34 16 5 C 0.10 0.88 7.35 86.83 0.64 1.51 16 6 C -0.12 -1.34 6.67 31.65 0.21 -1.13 16 7 C 0.04 0.98 3.01 44.91 0.14 1.11 16 8 H 0.12 2.55 8.02 -2.39 -0.02 2.53 16 9 N -0.51 -14.83 4.78 -897.08 -4.29 -19.12 16 10 C 0.02 0.50 8.78 127.69 1.12 1.62 16 11 C 0.06 2.15 4.54 86.30 0.39 2.54 16 12 C -0.08 -3.67 5.08 30.59 0.16 -3.52 16 13 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 14 C -0.53 -32.62 9.66 25.60 0.25 -32.37 16 15 H 0.03 2.29 7.99 -2.91 -0.02 2.26 16 16 C 0.01 0.40 5.47 84.65 0.46 0.86 16 17 N -0.95 -61.83 13.96 21.45 0.30 -61.53 16 18 Si 0.95 47.13 27.47 68.60 1.88 49.02 16 19 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 22 C 0.48 12.84 6.04 87.90 0.53 13.37 16 23 O -0.58 -21.69 15.03 -3.03 -0.05 -21.74 16 24 H 0.11 1.69 8.06 -2.91 -0.02 1.66 16 25 H 0.09 1.73 7.84 -2.91 -0.02 1.71 16 26 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 27 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.27 7.57 -2.38 -0.02 1.26 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.09 1.10 5.86 -2.39 -0.01 1.08 16 32 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 2.04 6.05 -2.39 -0.01 2.02 16 34 H 0.07 2.03 6.30 -2.39 -0.02 2.02 16 35 H 0.01 0.25 6.73 -2.39 -0.02 0.23 16 36 H 0.07 2.57 7.99 -2.39 -0.02 2.55 16 37 H 0.03 1.35 6.24 -2.39 -0.01 1.33 16 38 H 0.04 1.97 6.47 -2.39 -0.02 1.96 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 41 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 42 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -79.14 333.06 2.16 -76.98 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.92 Total: 8.16 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 5.78 Total: -18.44 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -6.39 Total: -93.98 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.88 Total: 49.02 kcal Total: -79.14 2.16 -76.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281386100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.416 kcal (2) G-P(sol) polarization free energy of solvation -79.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds