Wall clock time and date at job start Mon Mar 30 2020 01:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99956 * 2 1 4 4 C 1.50697 * 109.47204 * 293.95284 * 3 2 1 5 5 H 1.08001 * 119.99897 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99876 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99822 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99976 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47202 * 59.99821 * 8 6 4 10 10 H 1.48495 * 109.47227 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46983 * 300.00337 * 8 6 4 12 12 C 1.46894 * 110.99956 * 123.95546 * 2 1 3 13 13 C 1.52999 * 109.47355 * 66.04517 * 12 2 1 14 14 C 1.52995 * 109.47409 * 180.02562 * 13 12 2 15 15 N 1.46901 * 109.47356 * 180.02562 * 14 13 12 16 16 C 1.46902 * 111.00040 * 66.04114 * 15 14 13 17 17 C 1.46899 * 111.00103 * 189.99936 * 15 14 13 18 18 C 1.50703 * 109.47107 * 169.99758 * 17 15 14 19 19 C 1.34515 * 125.79060 * 89.99940 * 18 17 15 20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17 21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18 22 22 O 1.34306 * 125.78568 * 269.69278 * 18 17 15 23 23 H 1.09002 * 109.47571 * 296.04485 * 1 2 3 24 24 H 1.09008 * 109.47117 * 56.04371 * 1 2 3 25 25 H 1.09003 * 109.47554 * 176.04374 * 1 2 3 26 26 H 1.09004 * 109.47075 * 53.95650 * 3 2 1 27 27 H 1.09002 * 109.46915 * 173.95479 * 3 2 1 28 28 H 0.97004 * 119.99696 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46896 * 306.04663 * 12 2 1 30 30 H 1.08997 * 109.47330 * 186.04507 * 12 2 1 31 31 H 1.08998 * 109.47156 * 59.99710 * 13 12 2 32 32 H 1.09008 * 109.47233 * 300.00000 * 13 12 2 33 33 H 1.08998 * 109.47352 * 59.99642 * 14 13 12 34 34 H 1.09007 * 109.47234 * 299.99857 * 14 13 12 35 35 H 1.09005 * 109.46528 * 183.95480 * 16 15 14 36 36 H 1.09000 * 109.46785 * 303.95569 * 16 15 14 37 37 H 1.08997 * 109.47044 * 63.96124 * 16 15 14 38 38 H 1.09002 * 109.47043 * 289.99738 * 17 15 14 39 39 H 1.09001 * 109.47354 * 49.99799 * 17 15 14 40 40 H 1.07996 * 126.58016 * 0.03378 * 19 18 17 41 41 H 1.08006 * 126.57610 * 179.97438 * 20 19 18 42 42 H 1.08005 * 125.79499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0268 3.3495 -1.5284 7 7 2.7119 4.0019 -0.6149 8 14 1.5818 4.1874 -3.1376 9 1 0.1046 4.2237 -3.2848 10 1 2.1141 5.5736 -3.1376 11 1 2.1736 3.4303 -4.2700 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2426 0.9703 14 6 2.1791 -3.0403 2.1554 15 7 1.8302 -4.4582 1.9945 16 6 2.5166 -5.0409 0.8338 17 6 2.1282 -5.2157 3.2173 18 6 1.5377 -6.5980 3.1083 19 6 2.1563 -7.6800 2.6023 20 6 1.2427 -8.7549 2.6952 21 6 0.1207 -8.2657 3.2529 22 8 0.3067 -6.9597 3.5053 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5741 -0.8525 25 1 -0.3634 -1.0252 -0.0709 26 1 1.5611 1.9274 0.8310 27 1 3.0797 1.3444 0.1082 28 1 2.9865 4.9180 -0.7768 29 1 1.5610 -0.3872 2.0627 30 1 3.0796 -0.6611 1.1756 31 1 2.0657 -2.6213 0.0451 32 1 0.5471 -2.3475 0.9323 33 1 1.7445 -2.6615 3.0804 34 1 3.2635 -2.9355 2.1939 35 1 2.1869 -6.0707 0.6961 36 1 2.2787 -4.4608 -0.0579 37 1 3.5934 -5.0235 1.0020 38 1 3.2082 -5.2909 3.3440 39 1 1.6963 -4.7029 4.0768 40 1 3.1589 -7.7201 2.2028 41 1 1.4130 -9.7735 2.3789 42 1 -0.7764 -8.8284 3.4653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285758322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:27 Heat of formation + Delta-G solvation = 23.563868 kcal Electronic energy + Delta-G solvation = -19650.922511 eV Core-core repulsion = 16632.959299 eV Total energy + Delta-G solvation = -3017.963212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.73116 -38.14780 -36.53586 -33.29689 -32.83098 -31.82270 -30.00307 -27.46005 -27.09306 -26.22884 -24.47768 -22.43926 -21.91210 -20.69746 -20.53674 -19.92006 -17.50399 -16.54065 -16.28138 -15.75537 -15.38219 -15.08546 -14.81540 -14.46924 -14.18063 -13.56318 -13.38143 -13.14517 -13.03072 -12.85310 -12.74408 -11.93569 -11.86737 -11.73815 -11.64703 -11.44287 -11.18121 -10.87340 -10.81910 -10.57600 -10.40266 -10.17657 -10.09783 -9.73784 -9.17894 -8.77696 -8.44173 -8.40885 -7.18918 -6.00302 -4.01422 1.51741 2.39188 2.80624 3.35291 3.38907 3.42195 3.85219 4.44753 4.48135 4.76848 4.81398 4.90341 5.04435 5.10933 5.14750 5.32416 5.35778 5.44708 5.55282 5.59809 5.66944 5.70493 5.74617 5.89320 5.89933 5.97696 6.15134 6.24070 6.28680 6.38133 6.53381 6.59094 6.81757 6.85204 6.91358 7.00219 7.33227 7.38568 7.83307 8.12755 8.24832 8.59689 9.06187 9.62543 11.10657 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.051725 B = 0.002659 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.192574 B =10525.831438 C =10595.610017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.542 5.542 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.057 3.943 13 C -0.110 4.110 14 C 0.057 3.943 15 N -0.539 5.539 16 C 0.016 3.984 17 C 0.129 3.871 18 C 0.006 3.994 19 C -0.211 4.211 20 C -0.216 4.216 21 C -0.043 4.043 22 O -0.169 6.169 23 H 0.009 0.991 24 H 0.072 0.928 25 H 0.047 0.953 26 H -0.010 1.010 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.027 0.973 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 -23.006 8.692 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.266 5.266 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.072 4.072 13 C -0.148 4.148 14 C -0.070 4.070 15 N -0.263 5.263 16 C -0.132 4.132 17 C 0.002 3.998 18 C -0.045 4.045 19 C -0.231 4.231 20 C -0.235 4.235 21 C -0.111 4.111 22 O -0.064 6.064 23 H 0.028 0.972 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.008 0.992 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.015 -22.856 8.345 24.415 hybrid contribution 0.517 0.705 -0.044 0.875 sum -1.498 -22.152 8.301 23.703 Atomic orbital electron populations 1.22244 0.89004 0.99610 1.00364 1.62081 1.06953 1.17709 1.39870 1.19725 0.95292 0.81700 0.96552 1.21144 1.34747 0.96898 1.01741 0.91908 1.24999 0.95350 0.97354 0.97006 1.69952 1.38436 1.11478 1.34114 0.86552 0.78700 0.78300 0.83801 1.20277 1.21383 1.20163 1.21981 0.99794 0.92767 0.92666 1.21602 1.01727 0.94310 0.97208 1.22163 0.98518 0.86177 1.00153 1.61930 1.58995 1.02569 1.02820 1.22550 0.95795 1.00805 0.94039 1.20485 0.97672 0.87187 0.94472 1.22268 0.83596 0.96640 1.01971 1.21593 1.01823 0.92510 1.07150 1.21804 0.94473 1.00650 1.06548 1.24029 1.01017 0.81873 1.04159 1.84047 1.31852 1.25855 1.64638 0.97237 0.90906 0.93381 0.99226 0.95346 0.92908 0.96118 0.91706 0.91219 0.91278 0.90748 0.94453 0.91272 0.90289 0.95487 0.91555 0.88971 0.83747 0.83612 0.78252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.54 -11.99 4.75 -244.37 -1.16 -13.16 16 3 C 0.19 5.13 4.72 -4.98 -0.02 5.11 16 4 C -0.51 -14.48 8.46 -34.44 -0.29 -14.78 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.06 1.03 4.96 -3.83 -0.02 1.01 16 13 C -0.11 -1.62 5.07 -26.73 -0.14 -1.76 16 14 C 0.06 0.69 4.96 -3.83 -0.02 0.67 16 15 N -0.54 -6.26 4.75 -244.37 -1.16 -7.42 16 16 C 0.02 0.17 9.07 60.07 0.55 0.72 16 17 C 0.13 1.28 5.50 -4.98 -0.03 1.26 16 18 C 0.01 0.07 6.22 -35.62 -0.22 -0.15 16 19 C -0.21 -2.05 9.40 -39.70 -0.37 -2.42 16 20 C -0.22 -1.90 10.91 -39.71 -0.43 -2.34 16 21 C -0.04 -0.37 12.09 29.41 0.36 -0.02 16 22 O -0.17 -1.93 10.65 5.68 0.06 -1.87 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.07 1.57 6.76 -51.92 -0.35 1.21 16 25 H 0.05 0.84 6.47 -51.93 -0.34 0.50 16 26 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 27 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 31 H 0.07 1.06 6.47 -51.93 -0.34 0.72 16 32 H 0.07 1.06 6.55 -51.92 -0.34 0.72 16 33 H 0.07 0.86 7.93 -51.93 -0.41 0.44 16 34 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.07 0.73 6.31 -51.93 -0.33 0.40 16 36 H 0.08 0.91 6.30 -51.93 -0.33 0.58 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 39 H 0.09 0.86 7.93 -51.93 -0.41 0.44 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.20 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -31.61 339.22 -8.60 -40.21 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.98 Total: -3.43 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.19 Total: -9.96 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -1.59 Total: -46.91 kcal Atomic # 8 Polarization: -1.93 SS G_CDS: 0.06 Total: -1.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.61 -8.60 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285758322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.777 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds