Wall clock time and date at job start Mon Mar 30 2020 01:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99956 * 2 1 4 4 C 1.50697 * 109.47204 * 293.95284 * 3 2 1 5 5 H 1.08001 * 119.99897 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99876 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99822 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99976 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47202 * 59.99821 * 8 6 4 10 10 H 1.48495 * 109.47227 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46983 * 300.00337 * 8 6 4 12 12 C 1.46894 * 110.99956 * 123.95546 * 2 1 3 13 13 C 1.52999 * 109.47355 * 66.04517 * 12 2 1 14 14 C 1.52995 * 109.47409 * 180.02562 * 13 12 2 15 15 N 1.46901 * 109.47356 * 180.02562 * 14 13 12 16 16 C 1.46902 * 111.00040 * 66.04114 * 15 14 13 17 17 C 1.46899 * 111.00103 * 189.99936 * 15 14 13 18 18 C 1.50703 * 109.47107 * 169.99758 * 17 15 14 19 19 C 1.34515 * 125.79060 * 89.99940 * 18 17 15 20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17 21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18 22 22 O 1.34306 * 125.78568 * 269.69278 * 18 17 15 23 23 H 1.09002 * 109.47571 * 296.04485 * 1 2 3 24 24 H 1.09008 * 109.47117 * 56.04371 * 1 2 3 25 25 H 1.09003 * 109.47554 * 176.04374 * 1 2 3 26 26 H 1.09004 * 109.47075 * 53.95650 * 3 2 1 27 27 H 1.09002 * 109.46915 * 173.95479 * 3 2 1 28 28 H 0.97004 * 119.99696 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46896 * 306.04663 * 12 2 1 30 30 H 1.08997 * 109.47330 * 186.04507 * 12 2 1 31 31 H 1.08998 * 109.47156 * 59.99710 * 13 12 2 32 32 H 1.09008 * 109.47233 * 300.00000 * 13 12 2 33 33 H 1.08998 * 109.47352 * 59.99642 * 14 13 12 34 34 H 1.09007 * 109.47234 * 299.99857 * 14 13 12 35 35 H 1.09005 * 109.46528 * 183.95480 * 16 15 14 36 36 H 1.09000 * 109.46785 * 303.95569 * 16 15 14 37 37 H 1.08997 * 109.47044 * 63.96124 * 16 15 14 38 38 H 1.09002 * 109.47043 * 289.99738 * 17 15 14 39 39 H 1.09001 * 109.47354 * 49.99799 * 17 15 14 40 40 H 1.07996 * 126.58016 * 0.03378 * 19 18 17 41 41 H 1.08006 * 126.57610 * 179.97438 * 20 19 18 42 42 H 1.08005 * 125.79499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0268 3.3495 -1.5284 7 7 2.7119 4.0019 -0.6149 8 14 1.5818 4.1874 -3.1376 9 1 0.1046 4.2237 -3.2848 10 1 2.1141 5.5736 -3.1376 11 1 2.1736 3.4303 -4.2700 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2426 0.9703 14 6 2.1791 -3.0403 2.1554 15 7 1.8302 -4.4582 1.9945 16 6 2.5166 -5.0409 0.8338 17 6 2.1282 -5.2157 3.2173 18 6 1.5377 -6.5980 3.1083 19 6 2.1563 -7.6800 2.6023 20 6 1.2427 -8.7549 2.6952 21 6 0.1207 -8.2657 3.2529 22 8 0.3067 -6.9597 3.5053 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5741 -0.8525 25 1 -0.3634 -1.0252 -0.0709 26 1 1.5611 1.9274 0.8310 27 1 3.0797 1.3444 0.1082 28 1 2.9865 4.9180 -0.7768 29 1 1.5610 -0.3872 2.0627 30 1 3.0796 -0.6611 1.1756 31 1 2.0657 -2.6213 0.0451 32 1 0.5471 -2.3475 0.9323 33 1 1.7445 -2.6615 3.0804 34 1 3.2635 -2.9355 2.1939 35 1 2.1869 -6.0707 0.6961 36 1 2.2787 -4.4608 -0.0579 37 1 3.5934 -5.0235 1.0020 38 1 3.2082 -5.2909 3.3440 39 1 1.6963 -4.7029 4.0768 40 1 3.1589 -7.7201 2.2028 41 1 1.4130 -9.7735 2.3789 42 1 -0.7764 -8.8284 3.4653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285758322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:27 Heat of formation + Delta-G solvation = 2.299612 kcal Electronic energy + Delta-G solvation = -19651.844598 eV Core-core repulsion = 16632.959299 eV Total energy + Delta-G solvation = -3018.885299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.43970 -39.23544 -38.06264 -34.90587 -33.95841 -33.10203 -30.99586 -29.14067 -28.22014 -27.59575 -25.95388 -23.87282 -22.61366 -22.06583 -21.46546 -21.20485 -18.50224 -18.18860 -17.32338 -16.89556 -16.65967 -16.41548 -15.94751 -15.84420 -15.57330 -14.91365 -14.75149 -14.46982 -13.88166 -13.71745 -13.63819 -13.47940 -13.20362 -13.12440 -12.93056 -12.69379 -12.59668 -12.53568 -12.34221 -12.18339 -12.07601 -11.84545 -11.37202 -11.21828 -10.80002 -10.61156 -9.53243 -9.24178 -9.01148 -8.20359 -6.30682 0.80406 1.41394 1.44920 1.52844 1.71608 2.15054 2.40726 2.95150 3.11901 3.42776 3.81035 4.02737 4.08129 4.15599 4.21694 4.28248 4.38838 4.44350 4.49245 4.58269 4.64543 4.65776 4.70598 4.80239 4.84305 4.95939 5.03471 5.05646 5.07993 5.17480 5.21826 5.24178 5.31444 5.39918 5.64018 5.65715 5.99566 6.00423 6.06204 6.28390 6.33838 6.65942 6.85420 7.38995 8.90658 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.051725 B = 0.002659 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.192574 B =10525.831438 C =10595.610017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.551 5.551 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.063 0.937 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.058 3.942 13 C -0.095 4.095 14 C 0.066 3.934 15 N -0.551 5.551 16 C 0.019 3.981 17 C 0.131 3.869 18 C -0.018 4.018 19 C -0.214 4.214 20 C -0.228 4.228 21 C -0.045 4.045 22 O -0.192 6.192 23 H 0.009 0.991 24 H 0.055 0.945 25 H 0.079 0.921 26 H -0.039 1.039 27 H 0.004 0.996 28 H 0.265 0.735 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 -24.484 8.218 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.276 5.276 3 C 0.080 3.920 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.071 4.071 13 C -0.133 4.133 14 C -0.062 4.062 15 N -0.276 5.276 16 C -0.129 4.129 17 C 0.004 3.996 18 C -0.068 4.068 19 C -0.234 4.234 20 C -0.247 4.247 21 C -0.113 4.113 22 O -0.088 6.088 23 H 0.027 0.973 24 H 0.074 0.926 25 H 0.098 0.902 26 H -0.021 1.021 27 H 0.022 0.978 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.174 0.826 41 H 0.184 0.816 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.517 -24.365 7.878 25.730 hybrid contribution 0.665 1.067 0.156 1.267 sum -1.852 -23.298 8.035 24.714 Atomic orbital electron populations 1.22229 0.87684 1.01280 0.99553 1.62014 1.08225 1.15179 1.42140 1.19392 0.93635 0.83962 0.94988 1.21459 1.34957 0.97564 1.02404 0.91876 1.25947 0.94997 0.98042 1.00820 1.70082 1.39319 1.11919 1.36259 0.85413 0.78853 0.77143 0.79070 1.19196 1.20775 1.19276 1.22052 0.99407 0.94327 0.91288 1.21421 1.01474 0.92063 0.98371 1.22008 0.98790 0.86434 0.98994 1.61862 1.59577 1.02312 1.03816 1.22508 0.96349 1.00602 0.93412 1.20516 0.98588 0.86852 0.93645 1.22444 0.83851 0.97212 1.03287 1.21869 1.02438 0.92604 1.06445 1.22153 0.94339 1.01514 1.06657 1.24764 1.02207 0.81114 1.03173 1.84031 1.32321 1.27201 1.65244 0.97291 0.92596 0.90220 1.02140 0.97839 0.92653 0.95909 0.92153 0.91651 0.91611 0.90043 0.93779 0.91103 0.91282 0.94507 0.90060 0.88649 0.82637 0.81576 0.75114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.14 127.69 1.17 2.79 16 2 N -0.55 -24.58 4.75 -927.05 -4.41 -28.98 16 3 C 0.21 11.34 4.72 85.56 0.40 11.74 16 4 C -0.53 -30.46 8.46 25.60 0.22 -30.24 16 5 H 0.06 3.58 7.12 -2.91 -0.02 3.56 16 6 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 7 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 8 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 C 0.06 2.08 4.96 86.30 0.43 2.51 16 13 C -0.10 -2.69 5.07 30.59 0.16 -2.54 16 14 C 0.07 1.48 4.96 86.30 0.43 1.91 16 15 N -0.55 -11.99 4.75 -927.03 -4.41 -16.40 16 16 C 0.02 0.39 9.07 127.69 1.16 1.54 16 17 C 0.13 2.41 5.50 85.56 0.47 2.88 16 18 C -0.02 -0.36 6.22 24.83 0.15 -0.20 16 19 C -0.21 -3.82 9.40 22.19 0.21 -3.62 16 20 C -0.23 -3.58 10.91 22.19 0.24 -3.34 16 21 C -0.05 -0.71 12.09 66.97 0.81 0.10 16 22 O -0.19 -4.18 10.65 -2.58 -0.03 -4.20 16 23 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 24 H 0.06 2.40 6.76 -2.38 -0.02 2.38 16 25 H 0.08 2.66 6.47 -2.39 -0.02 2.64 16 26 H -0.04 -2.32 8.12 -2.38 -0.02 -2.34 16 27 H 0.00 0.21 7.93 -2.39 -0.02 0.19 16 28 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 30 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 31 H 0.06 1.92 6.47 -2.39 -0.02 1.91 16 32 H 0.07 1.91 6.55 -2.38 -0.02 1.90 16 33 H 0.08 1.74 7.93 -2.39 -0.02 1.72 16 34 H 0.04 0.95 8.12 -2.38 -0.02 0.93 16 35 H 0.07 1.40 6.31 -2.38 -0.02 1.38 16 36 H 0.07 1.52 6.30 -2.39 -0.02 1.50 16 37 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 39 H 0.10 1.65 7.93 -2.39 -0.02 1.63 16 40 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.23 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -68.00 339.22 0.75 -67.25 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.97 Total: 8.35 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 6.30 Total: -16.00 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -8.53 Total: -102.19 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.03 Total: -4.20 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.00 0.75 -67.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285758322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.549 kcal (2) G-P(sol) polarization free energy of solvation -67.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds