Wall clock time and date at job start Mon Mar 30 2020 01:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00701 * 2 1 4 4 N 1.46500 * 109.46732 * 125.00126 * 3 2 1 5 5 C 1.46496 * 119.99989 * 264.35200 * 4 3 2 6 6 C 1.50701 * 109.47382 * 265.12997 * 5 4 3 7 7 H 1.08001 * 119.99954 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99741 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00171 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46773 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46917 * 120.00456 * 10 8 6 13 13 H 1.48497 * 109.46843 * 240.00408 * 10 8 6 14 14 C 1.34775 * 120.00029 * 84.35793 * 4 3 2 15 15 O 1.21283 * 119.99944 * 5.97484 * 14 4 3 16 16 C 1.50695 * 120.00108 * 185.97810 * 14 4 3 17 17 C 1.53122 * 109.52378 * 191.95911 * 16 14 4 18 18 C 1.53041 * 109.27890 * 182.44071 * 17 16 14 19 19 N 1.46854 * 109.52066 * 59.17583 * 18 17 16 20 20 C 1.46901 * 110.99529 * 174.16027 * 19 18 17 21 21 C 1.46840 * 111.20214 * 298.25555 * 19 18 17 22 22 C 1.53043 * 109.52219 * 61.74437 * 21 19 18 23 23 H 1.08007 * 119.99513 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.00544 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99736 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.46413 * 5.00621 * 3 2 1 27 27 H 1.08995 * 109.47465 * 245.00346 * 3 2 1 28 28 H 1.09003 * 109.47271 * 25.12984 * 5 4 3 29 29 H 1.08997 * 109.47342 * 145.13139 * 5 4 3 30 30 H 0.97001 * 119.99666 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.57673 * 312.11413 * 16 14 4 32 32 H 1.08995 * 109.50515 * 62.49631 * 17 16 14 33 33 H 1.09001 * 109.50166 * 302.37882 * 17 16 14 34 34 H 1.08999 * 109.45842 * 299.16191 * 18 17 16 35 35 H 1.08992 * 109.46128 * 179.19021 * 18 17 16 36 36 H 1.08997 * 109.47326 * 60.00029 * 20 19 18 37 37 H 1.09000 * 109.47272 * 300.00131 * 20 19 18 38 38 H 1.08996 * 109.47160 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.46742 * 181.76020 * 21 19 18 40 40 H 1.09000 * 109.46371 * 301.73341 * 21 19 18 41 41 H 1.08997 * 109.50518 * 180.87818 * 22 21 19 42 42 H 1.09001 * 109.53279 * 60.77537 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3316 1.1314 5 6 2.6016 1.9759 2.3872 6 6 3.1041 3.3966 2.4013 7 1 3.6597 3.7813 1.5588 8 6 2.8536 4.2058 3.4892 9 7 2.1766 3.7376 4.5149 10 14 3.4759 5.9671 3.5062 11 1 4.2031 6.2473 2.2422 12 1 2.3252 6.8974 3.6315 13 1 4.3934 6.1567 4.6583 14 6 4.2106 0.7633 1.0170 15 8 4.5775 0.3263 -0.0532 16 6 5.1151 0.6709 2.2187 17 6 6.5227 0.2683 1.7700 18 6 7.4210 0.1167 2.9997 19 7 6.8615 -0.9056 3.8932 20 6 7.7689 -1.1768 5.0161 21 6 5.5294 -0.5185 4.3747 22 6 4.5745 -0.3859 3.1860 23 1 -0.5400 0.9354 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3587 2.1315 0.0897 27 1 2.6214 1.4025 -0.9313 28 1 1.5150 1.9740 2.4727 29 1 3.0330 1.4298 3.2261 30 1 2.0007 4.3068 5.2804 31 1 5.1555 1.6375 2.7207 32 1 6.9298 1.0381 1.1145 33 1 6.4765 -0.6797 1.2340 34 1 7.4778 1.0687 3.5275 35 1 8.4202 -0.1838 2.6846 36 1 7.9246 -0.2613 5.5868 37 1 8.7250 -1.5331 4.6328 38 1 7.3305 -1.9377 5.6619 39 1 5.1547 -1.2803 5.0583 40 1 5.5950 0.4365 4.8960 41 1 3.5898 -0.0833 3.5422 42 1 4.4971 -1.3440 2.6721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293807616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:08 Heat of formation + Delta-G solvation = -20.215053 kcal Electronic energy + Delta-G solvation = -21375.839479 eV Core-core repulsion = 18355.977871 eV Total energy + Delta-G solvation = -3019.861608 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.73697 -37.92699 -35.43880 -33.78108 -32.87349 -32.07392 -30.52693 -27.63524 -27.11094 -25.27598 -23.33379 -22.79492 -22.38460 -19.98027 -19.42167 -18.11923 -16.73167 -16.05720 -15.84154 -15.29876 -14.86558 -14.56361 -14.49842 -14.28065 -14.22083 -13.21744 -13.11181 -12.74632 -12.46215 -12.32782 -12.16787 -12.02639 -11.56277 -11.43727 -11.36748 -11.05949 -10.93155 -10.90515 -10.81586 -10.58427 -10.22863 -10.13265 -10.04601 -9.70528 -9.16282 -8.80912 -8.54505 -8.16307 -7.70345 -6.20959 -4.27926 2.57214 3.18627 3.27645 3.31697 3.46530 4.06857 4.12177 4.32138 5.05413 5.11456 5.13099 5.23956 5.37069 5.40790 5.51786 5.56792 5.59804 5.67322 5.76133 5.88392 5.92346 5.95664 6.07338 6.09233 6.16553 6.26421 6.30640 6.34719 6.38502 6.55457 6.74738 6.84786 6.93104 7.07113 7.21849 7.23830 7.27715 7.57993 7.75297 8.05166 8.36030 8.78701 9.06709 9.39984 10.85358 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.008331 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.801591 B = 3360.063500 C = 4888.203520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.143 3.857 4 N -0.593 5.593 5 C 0.232 3.768 6 C -0.537 4.537 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.890 5.890 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.525 3.475 15 O -0.575 6.575 16 C -0.106 4.106 17 C -0.094 4.094 18 C 0.056 3.944 19 N -0.545 5.545 20 C 0.026 3.974 21 C 0.059 3.941 22 C -0.105 4.105 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.264 0.736 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.083 0.917 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 -7.246 -0.311 8.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.323 5.323 5 C 0.113 3.887 6 C -0.576 4.576 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.721 3.279 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.209 1.209 14 C 0.314 3.686 15 O -0.456 6.456 16 C -0.127 4.127 17 C -0.132 4.132 18 C -0.071 4.071 19 N -0.270 5.270 20 C -0.123 4.123 21 C -0.069 4.069 22 C -0.143 4.143 23 H 0.115 0.885 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.436 -7.820 -0.934 9.039 hybrid contribution 0.232 1.874 0.737 2.028 sum 4.669 -5.945 -0.197 7.562 Atomic orbital electron populations 1.23754 0.95764 1.01487 1.02286 1.23406 0.96040 0.99412 0.98353 1.20397 0.92214 0.94580 0.90854 1.48209 1.13753 1.54776 1.15570 1.19592 0.96811 0.92369 0.79961 1.21567 1.35951 0.96758 1.03335 0.92122 1.24930 0.94889 0.98652 0.95289 1.69932 1.39419 1.36627 1.06819 0.86499 0.78738 0.84463 0.78177 1.19645 1.20818 1.20852 1.20434 0.81895 0.76747 0.89515 1.90570 1.74920 1.50576 1.29501 1.21302 0.94353 1.01839 0.95197 1.21377 0.93144 1.02528 0.96175 1.22119 0.97988 0.92939 0.94093 1.61975 1.02945 1.44184 1.17863 1.22325 0.96889 0.99958 0.93095 1.22071 0.88648 0.99476 0.96682 1.21599 0.98996 0.98413 0.95282 0.88521 0.88930 0.87831 0.89996 0.90418 0.94703 0.93569 0.92607 0.87473 0.91429 0.90626 0.94728 0.90981 0.95814 0.91697 0.91617 0.90843 0.94183 0.89845 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.83 14.32 29.02 0.42 -2.41 16 2 C -0.15 -2.56 9.80 -36.03 -0.35 -2.91 16 3 C 0.14 2.70 5.82 -5.19 -0.03 2.67 16 4 N -0.59 -12.56 2.47 -176.44 -0.44 -13.00 16 5 C 0.23 5.43 4.73 -5.20 -0.02 5.40 16 6 C -0.54 -13.83 8.79 -34.44 -0.30 -14.13 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.04 13.29 55.43 0.74 -23.30 16 10 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.53 11.10 6.82 -10.99 -0.07 11.03 16 15 O -0.57 -13.14 15.58 5.55 0.09 -13.05 16 16 C -0.11 -1.98 1.75 -91.65 -0.16 -2.14 16 17 C -0.09 -1.57 4.80 -26.65 -0.13 -1.70 16 18 C 0.06 0.82 5.46 -3.83 -0.02 0.79 16 19 N -0.54 -7.79 4.91 -242.96 -1.19 -8.99 16 20 C 0.03 0.30 9.59 60.07 0.58 0.87 16 21 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 22 C -0.11 -1.78 5.09 -26.64 -0.14 -1.92 16 23 H 0.10 1.35 7.84 -52.48 -0.41 0.94 16 24 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 25 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 26 H 0.08 1.51 7.68 -51.93 -0.40 1.12 16 27 H 0.08 1.49 7.52 -51.93 -0.39 1.10 16 28 H 0.03 0.86 8.04 -51.93 -0.42 0.45 16 29 H 0.05 1.09 4.54 -51.93 -0.24 0.86 16 30 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.11 2.22 7.02 -51.93 -0.36 1.86 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.33 7.89 -51.93 -0.41 0.92 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 39 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.50 5.84 -51.93 -0.30 1.20 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -28.13 336.74 -8.23 -36.36 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.12 Total: 3.50 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.36 Total: -1.97 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.89 Total: -45.28 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.13 -8.23 -36.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293807616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.143 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds