Wall clock time and date at job start Mon Mar 30 2020 01:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00701 * 2 1 4 4 N 1.46500 * 109.46732 * 125.00126 * 3 2 1 5 5 C 1.46496 * 119.99989 * 264.35200 * 4 3 2 6 6 C 1.50701 * 109.47382 * 265.12997 * 5 4 3 7 7 H 1.08001 * 119.99954 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99741 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00171 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46773 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46917 * 120.00456 * 10 8 6 13 13 H 1.48497 * 109.46843 * 240.00408 * 10 8 6 14 14 C 1.34775 * 120.00029 * 84.35793 * 4 3 2 15 15 O 1.21283 * 119.99944 * 5.97484 * 14 4 3 16 16 C 1.50695 * 120.00108 * 185.97810 * 14 4 3 17 17 C 1.53122 * 109.52378 * 191.95911 * 16 14 4 18 18 C 1.53041 * 109.27890 * 182.44071 * 17 16 14 19 19 N 1.46854 * 109.52066 * 59.17583 * 18 17 16 20 20 C 1.46901 * 110.99529 * 174.16027 * 19 18 17 21 21 C 1.46840 * 111.20214 * 298.25555 * 19 18 17 22 22 C 1.53043 * 109.52219 * 61.74437 * 21 19 18 23 23 H 1.08007 * 119.99513 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.00544 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99736 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.46413 * 5.00621 * 3 2 1 27 27 H 1.08995 * 109.47465 * 245.00346 * 3 2 1 28 28 H 1.09003 * 109.47271 * 25.12984 * 5 4 3 29 29 H 1.08997 * 109.47342 * 145.13139 * 5 4 3 30 30 H 0.97001 * 119.99666 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.57673 * 312.11413 * 16 14 4 32 32 H 1.08995 * 109.50515 * 62.49631 * 17 16 14 33 33 H 1.09001 * 109.50166 * 302.37882 * 17 16 14 34 34 H 1.08999 * 109.45842 * 299.16191 * 18 17 16 35 35 H 1.08992 * 109.46128 * 179.19021 * 18 17 16 36 36 H 1.08997 * 109.47326 * 60.00029 * 20 19 18 37 37 H 1.09000 * 109.47272 * 300.00131 * 20 19 18 38 38 H 1.08996 * 109.47160 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.46742 * 181.76020 * 21 19 18 40 40 H 1.09000 * 109.46371 * 301.73341 * 21 19 18 41 41 H 1.08997 * 109.50518 * 180.87818 * 22 21 19 42 42 H 1.09001 * 109.53279 * 60.77537 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3316 1.1314 5 6 2.6016 1.9759 2.3872 6 6 3.1041 3.3966 2.4013 7 1 3.6597 3.7813 1.5588 8 6 2.8536 4.2058 3.4892 9 7 2.1766 3.7376 4.5149 10 14 3.4759 5.9671 3.5062 11 1 4.2031 6.2473 2.2422 12 1 2.3252 6.8974 3.6315 13 1 4.3934 6.1567 4.6583 14 6 4.2106 0.7633 1.0170 15 8 4.5775 0.3263 -0.0532 16 6 5.1151 0.6709 2.2187 17 6 6.5227 0.2683 1.7700 18 6 7.4210 0.1167 2.9997 19 7 6.8615 -0.9056 3.8932 20 6 7.7689 -1.1768 5.0161 21 6 5.5294 -0.5185 4.3747 22 6 4.5745 -0.3859 3.1860 23 1 -0.5400 0.9354 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3587 2.1315 0.0897 27 1 2.6214 1.4025 -0.9313 28 1 1.5150 1.9740 2.4727 29 1 3.0330 1.4298 3.2261 30 1 2.0007 4.3068 5.2804 31 1 5.1555 1.6375 2.7207 32 1 6.9298 1.0381 1.1145 33 1 6.4765 -0.6797 1.2340 34 1 7.4778 1.0687 3.5275 35 1 8.4202 -0.1838 2.6846 36 1 7.9246 -0.2613 5.5868 37 1 8.7250 -1.5331 4.6328 38 1 7.3305 -1.9377 5.6619 39 1 5.1547 -1.2803 5.0583 40 1 5.5950 0.4365 4.8960 41 1 3.5898 -0.0833 3.5422 42 1 4.4971 -1.3440 2.6721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293807616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:07 Heat of formation + Delta-G solvation = -36.486665 kcal Electronic energy + Delta-G solvation = -21376.545069 eV Core-core repulsion = 18355.977871 eV Total energy + Delta-G solvation = -3020.567198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.30891 -39.26909 -37.11097 -35.35418 -34.45685 -33.67638 -31.81275 -29.41087 -28.48533 -26.67706 -25.08744 -24.10163 -23.79041 -21.33598 -20.76400 -19.73006 -18.67535 -17.77459 -17.41591 -16.63243 -16.32884 -16.11373 -15.98016 -15.70345 -15.45271 -14.64284 -14.55946 -14.27886 -14.07091 -13.85911 -13.48184 -13.27602 -13.21478 -13.00388 -12.80804 -12.61102 -12.50825 -12.29695 -12.22768 -12.17140 -11.92817 -11.68691 -11.57648 -11.34952 -10.70907 -10.58455 -10.22851 -9.46985 -9.28549 -8.21756 -6.35695 1.27901 1.37070 1.40936 1.50899 1.76841 2.35354 2.51875 3.00769 3.07939 3.62412 3.83985 3.85956 4.07159 4.16737 4.20661 4.29068 4.39659 4.53989 4.58279 4.60462 4.61799 4.74669 4.77368 4.81094 4.87053 4.92737 4.98688 5.01450 5.01942 5.05263 5.13767 5.34432 5.39920 5.62410 5.66388 5.74398 5.93820 6.06537 6.09814 6.16722 6.55228 6.81175 7.29612 7.41041 8.83458 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.008331 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.801591 B = 3360.063500 C = 4888.203520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C 0.140 3.860 4 N -0.596 5.596 5 C 0.249 3.751 6 C -0.548 4.548 7 H 0.047 0.953 8 C 0.026 3.974 9 N -0.914 5.914 10 Si 0.952 3.048 11 H -0.274 1.274 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.519 3.481 15 O -0.595 6.595 16 C -0.102 4.102 17 C -0.088 4.088 18 C 0.062 3.938 19 N -0.552 5.552 20 C 0.025 3.975 21 C 0.065 3.935 22 C -0.097 4.097 23 H 0.104 0.896 24 H 0.119 0.881 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.019 0.981 29 H 0.044 0.956 30 H 0.268 0.732 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.096 0.904 36 H 0.024 0.976 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.027 0.973 41 H 0.068 0.932 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -7.675 0.298 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.017 3.983 4 N -0.326 5.326 5 C 0.128 3.872 6 C -0.586 4.586 7 H 0.065 0.935 8 C -0.175 4.175 9 N -0.553 5.553 10 Si 0.777 3.223 11 H -0.199 1.199 12 H -0.202 1.202 13 H -0.202 1.202 14 C 0.309 3.691 15 O -0.477 6.477 16 C -0.123 4.123 17 C -0.126 4.126 18 C -0.066 4.066 19 N -0.277 5.277 20 C -0.122 4.122 21 C -0.063 4.063 22 C -0.135 4.135 23 H 0.122 0.878 24 H 0.138 0.862 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.114 0.886 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.833 -8.255 -0.327 9.571 hybrid contribution 0.038 1.988 0.507 2.052 sum 4.871 -6.266 0.180 7.939 Atomic orbital electron populations 1.24021 0.94870 1.03101 0.98305 1.23163 0.96764 0.97868 1.01985 1.20490 0.91978 0.96122 0.89660 1.48237 1.14364 1.54458 1.15493 1.19256 0.95456 0.91571 0.80882 1.21693 1.35972 0.97958 1.03026 0.93507 1.25573 0.94972 1.02019 0.94926 1.70004 1.40103 1.37920 1.07265 0.85601 0.78334 0.80293 0.78043 1.19890 1.20240 1.20161 1.20875 0.82008 0.76231 0.89979 1.90546 1.75278 1.51518 1.30386 1.21287 0.95296 1.01331 0.94406 1.21326 0.92300 1.01741 0.97278 1.22084 0.98417 0.93096 0.93035 1.61985 1.03009 1.43706 1.19020 1.22416 0.97076 1.00399 0.92354 1.22002 0.89043 0.99547 0.95738 1.21507 0.98807 0.97561 0.95644 0.87800 0.86250 0.88408 0.90013 0.91265 0.96291 0.93863 0.92282 0.89703 0.91957 0.91395 0.95186 0.88571 0.95758 0.90025 0.90334 0.88886 0.95483 0.91338 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.50 14.32 67.78 0.97 -3.53 16 2 C -0.18 -5.93 9.80 25.65 0.25 -5.68 16 3 C 0.14 5.40 5.82 85.63 0.50 5.90 16 4 N -0.60 -25.95 2.47 -830.53 -2.05 -28.00 16 5 C 0.25 11.92 4.73 85.63 0.41 12.33 16 6 C -0.55 -28.68 8.79 25.60 0.23 -28.45 16 7 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 8 C 0.03 1.35 5.46 84.66 0.46 1.82 16 9 N -0.91 -49.43 13.29 21.45 0.28 -49.14 16 10 Si 0.95 41.73 29.54 68.60 2.03 43.75 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 12 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 14 C 0.52 22.53 6.82 87.66 0.60 23.13 16 15 O -0.59 -27.79 15.58 -3.04 -0.05 -27.84 16 16 C -0.10 -3.90 1.75 -11.46 -0.02 -3.92 16 17 C -0.09 -2.94 4.80 30.65 0.15 -2.80 16 18 C 0.06 1.69 5.46 86.33 0.47 2.17 16 19 N -0.55 -14.79 4.91 -922.59 -4.53 -19.32 16 20 C 0.03 0.51 9.59 127.69 1.22 1.74 16 21 C 0.06 1.89 5.46 86.33 0.47 2.36 16 22 C -0.10 -3.32 5.09 30.65 0.16 -3.16 16 23 H 0.10 2.69 7.84 -2.91 -0.02 2.67 16 24 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 25 H 0.10 3.36 8.06 -2.91 -0.02 3.33 16 26 H 0.08 3.08 7.68 -2.39 -0.02 3.06 16 27 H 0.07 2.74 7.52 -2.39 -0.02 2.72 16 28 H 0.02 0.96 8.04 -2.39 -0.02 0.94 16 29 H 0.04 2.11 4.54 -2.39 -0.01 2.10 16 30 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.08 3.64 7.02 -2.39 -0.02 3.62 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.37 7.89 -2.39 -0.02 2.35 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 2.20 8.12 -2.39 -0.02 2.18 16 36 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 39 H 0.09 2.35 8.09 -2.39 -0.02 2.33 16 40 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 2.52 5.84 -2.39 -0.01 2.51 16 42 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -59.55 336.74 2.51 -57.04 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.97 Total: 21.60 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.86 Total: 1.90 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -6.29 Total: -96.46 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.05 Total: -27.84 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -59.55 2.51 -57.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293807616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.553 kcal (2) G-P(sol) polarization free energy of solvation -59.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds