Wall clock time and date at job start Mon Mar 30 2020 00:48:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46502 * 109.47426 * 2 1
4 4 C 1.36943 * 119.99706 * 276.31167 * 3 2 1
5 5 H 1.07994 * 119.99813 * 140.67498 * 4 3 2
6 6 C 1.38807 * 119.99835 * 320.66585 * 4 3 2
7 7 N 1.31621 * 119.99955 * 155.65034 * 6 4 3
8 8 Si 1.86798 * 120.00444 * 335.65834 * 6 4 3
9 9 H 1.48503 * 109.47334 * 95.20807 * 8 6 4
10 10 H 1.48502 * 109.47353 * 215.20786 * 8 6 4
11 11 H 1.48501 * 109.47030 * 335.20892 * 8 6 4
12 12 C 1.46496 * 120.00167 * 96.30757 * 3 2 1
13 13 H 1.09002 * 109.47224 * 180.02562 * 12 3 2
14 14 C 1.53002 * 109.46978 * 300.00125 * 12 3 2
15 15 C 1.50695 * 109.47176 * 59.99887 * 12 3 2
16 16 N 1.30255 * 125.62358 * 315.02762 * 15 12 3
17 17 C 1.34476 * 108.70278 * 179.97438 * 16 15 12
18 18 C 1.34325 * 107.67027 * 359.97438 * 17 16 15
19 19 C 1.50703 * 126.44485 * 179.97438 * 18 17 16
20 20 C 1.52995 * 109.46877 * 0.02941 * 19 18 17
21 21 C 1.53000 * 109.46995 * 120.02927 * 19 18 17
22 22 C 1.53005 * 109.46979 * 240.02829 * 19 18 17
23 23 O 1.33973 * 125.61545 * 134.98164 * 15 12 3
24 24 H 1.09003 * 109.47615 * 180.02562 * 1 2 3
25 25 H 1.09001 * 109.47030 * 300.00273 * 1 2 3
26 26 H 1.09002 * 109.47560 * 60.00062 * 1 2 3
27 27 H 1.09001 * 109.47030 * 239.99727 * 2 1 3
28 28 H 1.08995 * 109.47199 * 120.00086 * 2 1 3
29 29 H 0.97001 * 120.00310 * 180.02562 * 7 6 4
30 30 H 1.08997 * 109.47020 * 180.02562 * 14 12 3
31 31 H 1.08999 * 109.47349 * 300.00018 * 14 12 3
32 32 H 1.08993 * 109.47232 * 59.99954 * 14 12 3
33 33 H 1.08000 * 126.16621 * 179.97438 * 17 16 15
34 34 H 1.08997 * 109.47728 * 59.99961 * 20 19 18
35 35 H 1.09003 * 109.47070 * 180.02562 * 20 19 18
36 36 H 1.09004 * 109.47317 * 299.99642 * 20 19 18
37 37 H 1.09001 * 109.47350 * 59.99908 * 21 19 18
38 38 H 1.09003 * 109.46785 * 180.02562 * 21 19 18
39 39 H 1.09000 * 109.46640 * 300.00053 * 21 19 18
40 40 H 1.08995 * 109.47008 * 60.00311 * 22 19 18
41 41 H 1.09003 * 109.46548 * 180.02562 * 22 19 18
42 42 H 1.09001 * 109.47084 * 299.99919 * 22 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1237 2.0702 -1.1788
5 1 1.8562 3.1157 -1.2189
6 6 2.5744 1.4247 -2.3220
7 7 2.2436 1.8834 -3.5105
8 14 3.6504 -0.0951 -2.1739
9 1 2.8026 -1.3117 -2.2554
10 1 4.6429 -0.1086 -3.2783
11 1 4.3609 -0.0734 -0.8700
12 6 2.3940 2.0253 1.2610
13 1 2.7302 3.0432 1.0631
14 6 1.1832 2.0614 2.1957
15 6 3.5074 1.2455 1.9113
16 7 3.5558 -0.0505 2.0323
17 6 4.6961 -0.3824 2.6632
18 6 5.3592 0.7544 2.9318
19 6 6.6891 0.8712 3.6310
20 6 7.1941 -0.5243 4.0027
21 6 7.6973 1.5472 2.6997
22 6 6.5258 1.7095 4.9006
23 8 4.6112 1.7709 2.4595
24 1 -0.3634 -1.0277 0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 1.8933 -0.5139 -0.8900
28 1 1.8933 -0.5138 0.8899
29 1 2.5582 1.4321 -4.3094
30 1 1.4625 2.5411 3.1337
31 1 0.3777 2.6255 1.7254
32 1 0.8466 1.0438 2.3937
33 1 5.0202 -1.3827 2.9096
34 1 7.3104 -1.1215 3.0983
35 1 8.1558 -0.4398 4.5089
36 1 6.4759 -1.0059 4.6663
37 1 7.3375 2.5415 2.4349
38 1 8.6593 1.6313 3.2053
39 1 7.8135 0.9501 1.7953
40 1 5.8076 1.2279 5.5641
41 1 7.4878 1.7943 5.4061
42 1 6.1660 2.7037 4.6358
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000297698877.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:48:27
Heat of formation + Delta-G solvation = 33.299990 kcal
Electronic energy + Delta-G solvation = -21576.190896 eV
Core-core repulsion = 18558.649874 eV
Total energy + Delta-G solvation = -3017.541022 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.77486 -37.27679 -36.58575 -34.04136 -32.36731 -31.10258 -28.84893 -28.28753
-27.38941 -27.36005 -24.18021 -23.06942 -22.36114 -21.57318 -19.56397 -19.38800
-16.77879 -16.51116 -16.07964 -15.44177 -14.96261 -14.48917 -14.18494 -14.06740
-13.50087 -13.11519 -13.04880 -12.59451 -12.43458 -12.33462 -12.27739 -12.06576
-11.82494 -11.81551 -11.52262 -11.43640 -11.12702 -11.07922 -10.97765 -10.71983
-10.63386 -10.47787 -10.19565 -9.98062 -9.62590 -9.17344 -8.53184 -8.12650
-6.92555 -6.08330 -3.50910 2.00570 3.10513 3.29377 3.37141 3.48070
3.62369 4.51648 4.53841 4.67492 4.80624 4.81850 5.01218 5.20215
5.30033 5.41583 5.48622 5.54777 5.62004 5.71153 5.74188 5.76985
5.87317 5.90868 5.92244 6.06735 6.15976 6.18550 6.21278 6.32680
6.45919 6.48506 6.52546 6.57732 6.70833 6.79885 7.02013 7.04620
7.34090 8.00235 8.28858 8.42981 8.92089 9.63389 10.04743 11.05493
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.021689 B = 0.006758 C = 0.006052
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1290.680090 B = 4142.156771 C = 4625.376953
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.119 3.881
3 N -0.573 5.573
4 C -0.277 4.277
5 H 0.083 0.917
6 C 0.048 3.952
7 N -0.888 5.888
8 Si 0.876 3.124
9 H -0.284 1.284
10 H -0.304 1.304
11 H -0.265 1.265
12 C 0.251 3.749
13 H 0.095 0.905
14 C -0.150 4.150
15 C 0.203 3.797
16 N -0.488 5.488
17 C -0.042 4.042
18 C -0.064 4.064
19 C 0.023 3.977
20 C -0.140 4.140
21 C -0.143 4.143
22 C -0.140 4.140
23 O -0.204 6.204
24 H 0.035 0.965
25 H 0.047 0.953
26 H 0.057 0.943
27 H 0.041 0.959
28 H 0.079 0.921
29 H 0.265 0.735
30 H 0.047 0.953
31 H 0.071 0.929
32 H 0.061 0.939
33 H 0.170 0.830
34 H 0.062 0.938
35 H 0.067 0.933
36 H 0.062 0.938
37 H 0.061 0.939
38 H 0.062 0.938
39 H 0.058 0.942
40 H 0.058 0.942
41 H 0.062 0.938
42 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.118 -2.346 15.759 17.450
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.005 4.005
3 N -0.294 5.294
4 C -0.406 4.406
5 H 0.100 0.900
6 C -0.154 4.154
7 N -0.527 5.527
8 Si 0.706 3.294
9 H -0.211 1.211
10 H -0.232 1.232
11 H -0.190 1.190
12 C 0.141 3.859
13 H 0.113 0.887
14 C -0.209 4.209
15 C -0.007 4.007
16 N -0.216 5.216
17 C -0.181 4.181
18 C -0.117 4.117
19 C 0.022 3.978
20 C -0.197 4.197
21 C -0.200 4.200
22 C -0.197 4.197
23 O -0.091 6.091
24 H 0.054 0.946
25 H 0.066 0.934
26 H 0.076 0.924
27 H 0.059 0.941
28 H 0.097 0.903
29 H 0.075 0.925
30 H 0.066 0.934
31 H 0.090 0.910
32 H 0.080 0.920
33 H 0.187 0.813
34 H 0.081 0.919
35 H 0.086 0.914
36 H 0.081 0.919
37 H 0.080 0.920
38 H 0.081 0.919
39 H 0.078 0.922
40 H 0.077 0.923
41 H 0.081 0.919
42 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 6.661 -2.713 15.314 16.919
hybrid contribution 1.347 -0.666 -0.016 1.502
sum 8.008 -3.378 15.298 17.595
Atomic orbital electron populations
1.22244 0.98784 0.99190 1.01795 1.21376 0.92471 0.85691 1.00991
1.44347 1.70776 1.12496 1.01806 1.18800 1.40483 0.97141 0.84133
0.89990 1.25530 0.96882 0.97827 0.95196 1.69884 1.43649 1.41734
0.97450 0.86942 0.81479 0.83513 0.77448 1.21124 1.23179 1.18995
1.19434 0.85680 0.94765 0.86060 0.88708 1.22230 0.98184 1.02435
0.98052 1.28861 0.88048 0.89768 0.94035 1.70338 1.20693 1.12631
1.17962 1.22975 0.93026 0.99110 1.02944 1.23097 0.96623 0.86642
1.05365 1.18970 0.87353 0.97231 0.94213 1.21878 1.01203 0.94642
1.01972 1.21909 0.97843 1.01143 0.99134 1.21890 1.01881 1.00009
0.95962 1.84426 1.29143 1.37911 1.57619 0.94568 0.93421 0.92360
0.94108 0.90280 0.92526 0.93372 0.91003 0.92028 0.81267 0.91922
0.91442 0.91933 0.91966 0.91887 0.92245 0.92335 0.91925 0.92067
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.25 10.01 37.15 0.37 -2.88 16
2 C 0.12 2.74 4.52 -4.04 -0.02 2.72 16
3 N -0.57 -13.69 1.93 -166.99 -0.32 -14.01 16
4 C -0.28 -7.64 9.74 -15.06 -0.15 -7.79 16
5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16
6 C 0.05 1.40 5.29 -17.43 -0.09 1.31 16
7 N -0.89 -26.87 13.97 55.49 0.78 -26.09 16
8 Si 0.88 23.32 25.28 -169.99 -4.30 19.02 16
9 H -0.28 -7.44 6.65 56.52 0.38 -7.07 16
10 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16
11 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16
12 C 0.25 5.14 3.26 -69.09 -0.22 4.92 16
13 H 0.09 1.91 7.89 -51.93 -0.41 1.50 16
14 C -0.15 -2.52 8.24 37.16 0.31 -2.22 16
15 C 0.20 4.18 7.13 -12.95 -0.09 4.09 16
16 N -0.49 -10.14 8.64 -11.10 -0.10 -10.24 16
17 C -0.04 -0.75 10.84 -17.77 -0.19 -0.94 16
18 C -0.06 -1.05 5.81 -35.69 -0.21 -1.26 16
19 C 0.02 0.28 0.99 -155.66 -0.15 0.13 16
20 C -0.14 -1.36 7.39 37.15 0.27 -1.08 16
21 C -0.14 -1.69 8.46 37.16 0.31 -1.38 16
22 C -0.14 -1.46 8.46 37.16 0.31 -1.15 16
23 O -0.20 -3.93 10.78 5.33 0.06 -3.88 16
24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16
25 H 0.05 0.87 6.15 -51.93 -0.32 0.55 16
26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
27 H 0.04 1.04 3.40 -51.93 -0.18 0.87 16
28 H 0.08 1.77 5.49 -51.93 -0.28 1.48 16
29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16
30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16
32 H 0.06 1.06 6.65 -51.93 -0.35 0.71 16
33 H 0.17 2.48 7.32 -52.49 -0.38 2.09 16
34 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16
35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.06 0.58 7.95 -51.93 -0.41 0.16 16
37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 330.32 15.07 4.98 4.98
Total: -1.00 -31.53 330.32 -5.43 -36.96
By element:
Atomic # 1 Polarization: 5.78 SS G_CDS: -6.98 Total: -1.20 kcal
Atomic # 6 Polarization: -5.99 SS G_CDS: 0.45 Total: -5.54 kcal
Atomic # 7 Polarization: -50.70 SS G_CDS: 0.36 Total: -50.35 kcal
Atomic # 8 Polarization: -3.93 SS G_CDS: 0.06 Total: -3.88 kcal
Atomic # 14 Polarization: 23.32 SS G_CDS: -4.30 Total: 19.02 kcal
Total LS contribution 4.98 Total: 4.98 kcal
Total: -31.53 -5.43 -36.96 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000297698877.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.263 kcal
(2) G-P(sol) polarization free energy of solvation -31.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.733 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.300 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds