Wall clock time and date at job start Mon Mar 30 2020 00:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47426 * 2 1 4 4 C 1.36943 * 119.99706 * 276.31167 * 3 2 1 5 5 H 1.07994 * 119.99813 * 140.67498 * 4 3 2 6 6 C 1.38807 * 119.99835 * 320.66585 * 4 3 2 7 7 N 1.31621 * 119.99955 * 155.65034 * 6 4 3 8 8 Si 1.86798 * 120.00444 * 335.65834 * 6 4 3 9 9 H 1.48503 * 109.47334 * 95.20807 * 8 6 4 10 10 H 1.48502 * 109.47353 * 215.20786 * 8 6 4 11 11 H 1.48501 * 109.47030 * 335.20892 * 8 6 4 12 12 C 1.46496 * 120.00167 * 96.30757 * 3 2 1 13 13 H 1.09002 * 109.47224 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.46978 * 300.00125 * 12 3 2 15 15 C 1.50695 * 109.47176 * 59.99887 * 12 3 2 16 16 N 1.30255 * 125.62358 * 315.02762 * 15 12 3 17 17 C 1.34476 * 108.70278 * 179.97438 * 16 15 12 18 18 C 1.34325 * 107.67027 * 359.97438 * 17 16 15 19 19 C 1.50703 * 126.44485 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.46877 * 0.02941 * 19 18 17 21 21 C 1.53000 * 109.46995 * 120.02927 * 19 18 17 22 22 C 1.53005 * 109.46979 * 240.02829 * 19 18 17 23 23 O 1.33973 * 125.61545 * 134.98164 * 15 12 3 24 24 H 1.09003 * 109.47615 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47030 * 300.00273 * 1 2 3 26 26 H 1.09002 * 109.47560 * 60.00062 * 1 2 3 27 27 H 1.09001 * 109.47030 * 239.99727 * 2 1 3 28 28 H 1.08995 * 109.47199 * 120.00086 * 2 1 3 29 29 H 0.97001 * 120.00310 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47020 * 180.02562 * 14 12 3 31 31 H 1.08999 * 109.47349 * 300.00018 * 14 12 3 32 32 H 1.08993 * 109.47232 * 59.99954 * 14 12 3 33 33 H 1.08000 * 126.16621 * 179.97438 * 17 16 15 34 34 H 1.08997 * 109.47728 * 59.99961 * 20 19 18 35 35 H 1.09003 * 109.47070 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.47317 * 299.99642 * 20 19 18 37 37 H 1.09001 * 109.47350 * 59.99908 * 21 19 18 38 38 H 1.09003 * 109.46785 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.46640 * 300.00053 * 21 19 18 40 40 H 1.08995 * 109.47008 * 60.00311 * 22 19 18 41 41 H 1.09003 * 109.46548 * 180.02562 * 22 19 18 42 42 H 1.09001 * 109.47084 * 299.99919 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1237 2.0702 -1.1788 5 1 1.8562 3.1157 -1.2189 6 6 2.5744 1.4247 -2.3220 7 7 2.2436 1.8834 -3.5105 8 14 3.6504 -0.0951 -2.1739 9 1 2.8026 -1.3117 -2.2554 10 1 4.6429 -0.1086 -3.2783 11 1 4.3609 -0.0734 -0.8700 12 6 2.3940 2.0253 1.2610 13 1 2.7302 3.0432 1.0631 14 6 1.1832 2.0614 2.1957 15 6 3.5074 1.2455 1.9113 16 7 3.5558 -0.0505 2.0323 17 6 4.6961 -0.3824 2.6632 18 6 5.3592 0.7544 2.9318 19 6 6.6891 0.8712 3.6310 20 6 7.1941 -0.5243 4.0027 21 6 7.6973 1.5472 2.6997 22 6 6.5258 1.7095 4.9006 23 8 4.6112 1.7709 2.4595 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.5582 1.4321 -4.3094 30 1 1.4625 2.5411 3.1337 31 1 0.3777 2.6255 1.7254 32 1 0.8466 1.0438 2.3937 33 1 5.0202 -1.3827 2.9096 34 1 7.3104 -1.1215 3.0983 35 1 8.1558 -0.4398 4.5089 36 1 6.4759 -1.0059 4.6663 37 1 7.3375 2.5415 2.4349 38 1 8.6593 1.6313 3.2053 39 1 7.8135 0.9501 1.7953 40 1 5.8076 1.2279 5.5641 41 1 7.4878 1.7943 5.4061 42 1 6.1660 2.7037 4.6358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297698877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:27 Heat of formation + Delta-G solvation = 33.299990 kcal Electronic energy + Delta-G solvation = -21576.190896 eV Core-core repulsion = 18558.649874 eV Total energy + Delta-G solvation = -3017.541022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.77486 -37.27679 -36.58575 -34.04136 -32.36731 -31.10258 -28.84893 -28.28753 -27.38941 -27.36005 -24.18021 -23.06942 -22.36114 -21.57318 -19.56397 -19.38800 -16.77879 -16.51116 -16.07964 -15.44177 -14.96261 -14.48917 -14.18494 -14.06740 -13.50087 -13.11519 -13.04880 -12.59451 -12.43458 -12.33462 -12.27739 -12.06576 -11.82494 -11.81551 -11.52262 -11.43640 -11.12702 -11.07922 -10.97765 -10.71983 -10.63386 -10.47787 -10.19565 -9.98062 -9.62590 -9.17344 -8.53184 -8.12650 -6.92555 -6.08330 -3.50910 2.00570 3.10513 3.29377 3.37141 3.48070 3.62369 4.51648 4.53841 4.67492 4.80624 4.81850 5.01218 5.20215 5.30033 5.41583 5.48622 5.54777 5.62004 5.71153 5.74188 5.76985 5.87317 5.90868 5.92244 6.06735 6.15976 6.18550 6.21278 6.32680 6.45919 6.48506 6.52546 6.57732 6.70833 6.79885 7.02013 7.04620 7.34090 8.00235 8.28858 8.42981 8.92089 9.63389 10.04743 11.05493 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.006758 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.680090 B = 4142.156771 C = 4625.376953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.119 3.881 3 N -0.573 5.573 4 C -0.277 4.277 5 H 0.083 0.917 6 C 0.048 3.952 7 N -0.888 5.888 8 Si 0.876 3.124 9 H -0.284 1.284 10 H -0.304 1.304 11 H -0.265 1.265 12 C 0.251 3.749 13 H 0.095 0.905 14 C -0.150 4.150 15 C 0.203 3.797 16 N -0.488 5.488 17 C -0.042 4.042 18 C -0.064 4.064 19 C 0.023 3.977 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.140 4.140 23 O -0.204 6.204 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.265 0.735 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.118 -2.346 15.759 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.005 4.005 3 N -0.294 5.294 4 C -0.406 4.406 5 H 0.100 0.900 6 C -0.154 4.154 7 N -0.527 5.527 8 Si 0.706 3.294 9 H -0.211 1.211 10 H -0.232 1.232 11 H -0.190 1.190 12 C 0.141 3.859 13 H 0.113 0.887 14 C -0.209 4.209 15 C -0.007 4.007 16 N -0.216 5.216 17 C -0.181 4.181 18 C -0.117 4.117 19 C 0.022 3.978 20 C -0.197 4.197 21 C -0.200 4.200 22 C -0.197 4.197 23 O -0.091 6.091 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.187 0.813 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.661 -2.713 15.314 16.919 hybrid contribution 1.347 -0.666 -0.016 1.502 sum 8.008 -3.378 15.298 17.595 Atomic orbital electron populations 1.22244 0.98784 0.99190 1.01795 1.21376 0.92471 0.85691 1.00991 1.44347 1.70776 1.12496 1.01806 1.18800 1.40483 0.97141 0.84133 0.89990 1.25530 0.96882 0.97827 0.95196 1.69884 1.43649 1.41734 0.97450 0.86942 0.81479 0.83513 0.77448 1.21124 1.23179 1.18995 1.19434 0.85680 0.94765 0.86060 0.88708 1.22230 0.98184 1.02435 0.98052 1.28861 0.88048 0.89768 0.94035 1.70338 1.20693 1.12631 1.17962 1.22975 0.93026 0.99110 1.02944 1.23097 0.96623 0.86642 1.05365 1.18970 0.87353 0.97231 0.94213 1.21878 1.01203 0.94642 1.01972 1.21909 0.97843 1.01143 0.99134 1.21890 1.01881 1.00009 0.95962 1.84426 1.29143 1.37911 1.57619 0.94568 0.93421 0.92360 0.94108 0.90280 0.92526 0.93372 0.91003 0.92028 0.81267 0.91922 0.91442 0.91933 0.91966 0.91887 0.92245 0.92335 0.91925 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.01 37.15 0.37 -2.88 16 2 C 0.12 2.74 4.52 -4.04 -0.02 2.72 16 3 N -0.57 -13.69 1.93 -166.99 -0.32 -14.01 16 4 C -0.28 -7.64 9.74 -15.06 -0.15 -7.79 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.05 1.40 5.29 -17.43 -0.09 1.31 16 7 N -0.89 -26.87 13.97 55.49 0.78 -26.09 16 8 Si 0.88 23.32 25.28 -169.99 -4.30 19.02 16 9 H -0.28 -7.44 6.65 56.52 0.38 -7.07 16 10 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 11 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 12 C 0.25 5.14 3.26 -69.09 -0.22 4.92 16 13 H 0.09 1.91 7.89 -51.93 -0.41 1.50 16 14 C -0.15 -2.52 8.24 37.16 0.31 -2.22 16 15 C 0.20 4.18 7.13 -12.95 -0.09 4.09 16 16 N -0.49 -10.14 8.64 -11.10 -0.10 -10.24 16 17 C -0.04 -0.75 10.84 -17.77 -0.19 -0.94 16 18 C -0.06 -1.05 5.81 -35.69 -0.21 -1.26 16 19 C 0.02 0.28 0.99 -155.66 -0.15 0.13 16 20 C -0.14 -1.36 7.39 37.15 0.27 -1.08 16 21 C -0.14 -1.69 8.46 37.16 0.31 -1.38 16 22 C -0.14 -1.46 8.46 37.16 0.31 -1.15 16 23 O -0.20 -3.93 10.78 5.33 0.06 -3.88 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.87 6.15 -51.93 -0.32 0.55 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.04 1.04 3.40 -51.93 -0.18 0.87 16 28 H 0.08 1.77 5.49 -51.93 -0.28 1.48 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.06 6.65 -51.93 -0.35 0.71 16 33 H 0.17 2.48 7.32 -52.49 -0.38 2.09 16 34 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.58 7.95 -51.93 -0.41 0.16 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -31.53 330.32 -5.43 -36.96 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.98 Total: -1.20 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 0.45 Total: -5.54 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.36 Total: -50.35 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: 0.06 Total: -3.88 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.30 Total: 19.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.53 -5.43 -36.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297698877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.263 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds