Wall clock time and date at job start Mon Mar 30 2020 00:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47426 * 2 1 4 4 C 1.36943 * 119.99706 * 276.31167 * 3 2 1 5 5 H 1.07994 * 119.99813 * 140.67498 * 4 3 2 6 6 C 1.38807 * 119.99835 * 320.66585 * 4 3 2 7 7 N 1.31621 * 119.99955 * 155.65034 * 6 4 3 8 8 Si 1.86798 * 120.00444 * 335.65834 * 6 4 3 9 9 H 1.48503 * 109.47334 * 95.20807 * 8 6 4 10 10 H 1.48502 * 109.47353 * 215.20786 * 8 6 4 11 11 H 1.48501 * 109.47030 * 335.20892 * 8 6 4 12 12 C 1.46496 * 120.00167 * 96.30757 * 3 2 1 13 13 H 1.09002 * 109.47224 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.46978 * 300.00125 * 12 3 2 15 15 C 1.50695 * 109.47176 * 59.99887 * 12 3 2 16 16 N 1.30255 * 125.62358 * 315.02762 * 15 12 3 17 17 C 1.34476 * 108.70278 * 179.97438 * 16 15 12 18 18 C 1.34325 * 107.67027 * 359.97438 * 17 16 15 19 19 C 1.50703 * 126.44485 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.46877 * 0.02941 * 19 18 17 21 21 C 1.53000 * 109.46995 * 120.02927 * 19 18 17 22 22 C 1.53005 * 109.46979 * 240.02829 * 19 18 17 23 23 O 1.33973 * 125.61545 * 134.98164 * 15 12 3 24 24 H 1.09003 * 109.47615 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47030 * 300.00273 * 1 2 3 26 26 H 1.09002 * 109.47560 * 60.00062 * 1 2 3 27 27 H 1.09001 * 109.47030 * 239.99727 * 2 1 3 28 28 H 1.08995 * 109.47199 * 120.00086 * 2 1 3 29 29 H 0.97001 * 120.00310 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47020 * 180.02562 * 14 12 3 31 31 H 1.08999 * 109.47349 * 300.00018 * 14 12 3 32 32 H 1.08993 * 109.47232 * 59.99954 * 14 12 3 33 33 H 1.08000 * 126.16621 * 179.97438 * 17 16 15 34 34 H 1.08997 * 109.47728 * 59.99961 * 20 19 18 35 35 H 1.09003 * 109.47070 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.47317 * 299.99642 * 20 19 18 37 37 H 1.09001 * 109.47350 * 59.99908 * 21 19 18 38 38 H 1.09003 * 109.46785 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.46640 * 300.00053 * 21 19 18 40 40 H 1.08995 * 109.47008 * 60.00311 * 22 19 18 41 41 H 1.09003 * 109.46548 * 180.02562 * 22 19 18 42 42 H 1.09001 * 109.47084 * 299.99919 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1237 2.0702 -1.1788 5 1 1.8562 3.1157 -1.2189 6 6 2.5744 1.4247 -2.3220 7 7 2.2436 1.8834 -3.5105 8 14 3.6504 -0.0951 -2.1739 9 1 2.8026 -1.3117 -2.2554 10 1 4.6429 -0.1086 -3.2783 11 1 4.3609 -0.0734 -0.8700 12 6 2.3940 2.0253 1.2610 13 1 2.7302 3.0432 1.0631 14 6 1.1832 2.0614 2.1957 15 6 3.5074 1.2455 1.9113 16 7 3.5558 -0.0505 2.0323 17 6 4.6961 -0.3824 2.6632 18 6 5.3592 0.7544 2.9318 19 6 6.6891 0.8712 3.6310 20 6 7.1941 -0.5243 4.0027 21 6 7.6973 1.5472 2.6997 22 6 6.5258 1.7095 4.9006 23 8 4.6112 1.7709 2.4595 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.5582 1.4321 -4.3094 30 1 1.4625 2.5411 3.1337 31 1 0.3777 2.6255 1.7254 32 1 0.8466 1.0438 2.3937 33 1 5.0202 -1.3827 2.9096 34 1 7.3104 -1.1215 3.0983 35 1 8.1558 -0.4398 4.5089 36 1 6.4759 -1.0059 4.6663 37 1 7.3375 2.5415 2.4349 38 1 8.6593 1.6313 3.2053 39 1 7.8135 0.9501 1.7953 40 1 5.8076 1.2279 5.5641 41 1 7.4878 1.7943 5.4061 42 1 6.1660 2.7037 4.6358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297698877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:26 Heat of formation + Delta-G solvation = 13.322306 kcal Electronic energy + Delta-G solvation = -21577.057193 eV Core-core repulsion = 18558.649874 eV Total energy + Delta-G solvation = -3018.407319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.23394 -38.78539 -37.84177 -35.56267 -34.34851 -32.85920 -30.65572 -29.62543 -28.25350 -28.22324 -26.03012 -24.68122 -23.76686 -23.25342 -21.22341 -20.54594 -18.77364 -17.92784 -17.55203 -17.42637 -16.27432 -16.15544 -15.24534 -15.09017 -15.02254 -14.92272 -14.51693 -14.27651 -14.07375 -13.84389 -13.40567 -13.31770 -13.17701 -13.04842 -12.69801 -12.66417 -12.60222 -12.57448 -12.30970 -12.17871 -12.02569 -11.99491 -11.91924 -11.75619 -11.51734 -10.91172 -10.65007 -9.53414 -8.89708 -8.30788 -5.68743 0.58317 1.21799 1.29575 1.45769 1.73721 1.83220 2.33774 2.93408 3.24487 3.28413 3.65041 3.85058 3.92649 4.10998 4.22448 4.33293 4.36864 4.44705 4.62749 4.68012 4.73125 4.78835 4.79761 4.82987 4.90163 4.92292 4.93831 5.00098 5.01796 5.07893 5.14651 5.21961 5.26192 5.30933 5.31658 5.40432 5.51958 5.62971 5.88722 6.13358 6.86771 6.94410 7.52475 7.97876 8.87604 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.006758 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.680090 B = 4142.156771 C = 4625.376953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.119 3.881 3 N -0.585 5.585 4 C -0.259 4.259 5 H 0.059 0.941 6 C 0.002 3.998 7 N -0.930 5.930 8 Si 0.933 3.067 9 H -0.280 1.280 10 H -0.309 1.309 11 H -0.277 1.277 12 C 0.249 3.751 13 H 0.089 0.911 14 C -0.137 4.137 15 C 0.179 3.821 16 N -0.504 5.504 17 C -0.064 4.064 18 C -0.051 4.051 19 C 0.019 3.981 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.136 4.136 23 O -0.215 6.215 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.014 0.986 28 H 0.088 0.912 29 H 0.265 0.735 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.197 0.803 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.331 -3.347 18.634 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.005 4.005 3 N -0.307 5.307 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.573 5.573 8 Si 0.763 3.237 9 H -0.207 1.207 10 H -0.237 1.237 11 H -0.203 1.203 12 C 0.139 3.861 13 H 0.107 0.893 14 C -0.196 4.196 15 C -0.031 4.031 16 N -0.234 5.234 17 C -0.201 4.201 18 C -0.104 4.104 19 C 0.018 3.982 20 C -0.194 4.194 21 C -0.200 4.200 22 C -0.193 4.193 23 O -0.101 6.101 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.214 0.786 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.877 -3.718 18.230 20.204 hybrid contribution 1.043 -0.316 -0.729 1.311 sum 8.920 -4.035 17.501 20.053 Atomic orbital electron populations 1.22141 0.96694 1.00744 1.01510 1.21396 0.94176 0.84977 0.99993 1.44324 1.71952 1.12640 1.01821 1.18732 1.38270 0.96242 0.85635 0.92343 1.25956 0.98417 1.00151 0.95161 1.69964 1.45756 1.43575 0.97993 0.86041 0.79910 0.81562 0.76157 1.20718 1.23719 1.20263 1.19442 0.87269 0.93914 0.85444 0.89289 1.22102 0.96454 1.02771 0.98228 1.28406 0.88784 0.89823 0.96045 1.70252 1.22265 1.12647 1.18188 1.23458 0.92536 1.00770 1.03372 1.24081 0.97264 0.85649 1.03411 1.19330 0.84889 0.99443 0.94545 1.21903 1.02726 0.92648 1.02118 1.21926 0.99368 0.99766 0.98921 1.21875 1.03614 0.98753 0.95089 1.84402 1.29054 1.38895 1.57795 0.92147 0.91396 0.94838 0.96789 0.89379 0.92615 0.90825 0.90645 0.92059 0.78620 0.92530 0.88622 0.91252 0.93646 0.88533 0.93725 0.92155 0.88930 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 10.01 71.98 0.72 -5.24 16 2 C 0.12 5.39 4.52 86.38 0.39 5.79 16 3 N -0.59 -28.02 1.93 -682.24 -1.32 -29.34 16 4 C -0.26 -14.62 9.74 84.03 0.82 -13.80 16 5 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 6 C 0.00 0.11 5.29 84.86 0.45 0.56 16 7 N -0.93 -57.94 13.97 21.65 0.30 -57.64 16 8 Si 0.93 49.64 25.28 68.60 1.73 51.37 16 9 H -0.28 -14.52 6.65 99.48 0.66 -13.85 16 10 H -0.31 -16.43 7.11 99.48 0.71 -15.72 16 11 H -0.28 -15.12 7.11 99.48 0.71 -14.41 16 12 C 0.25 10.08 3.26 44.24 0.14 10.22 16 13 H 0.09 3.63 7.89 -2.39 -0.02 3.61 16 14 C -0.14 -4.36 8.24 71.98 0.59 -3.77 16 15 C 0.18 7.25 7.13 88.34 0.63 7.88 16 16 N -0.50 -20.36 8.64 -303.83 -2.63 -22.98 16 17 C -0.06 -2.14 10.84 83.39 0.90 -1.24 16 18 C -0.05 -1.60 5.81 24.79 0.14 -1.45 16 19 C 0.02 0.40 0.99 -52.93 -0.05 0.35 16 20 C -0.14 -2.15 7.39 71.98 0.53 -1.61 16 21 C -0.14 -3.05 8.46 71.98 0.61 -2.44 16 22 C -0.14 -2.40 8.46 71.98 0.61 -1.79 16 23 O -0.21 -8.11 10.78 -3.85 -0.04 -8.15 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.07 2.35 6.15 -2.39 -0.01 2.34 16 26 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.01 0.72 3.40 -2.39 -0.01 0.71 16 28 H 0.09 3.85 5.49 -2.39 -0.01 3.83 16 29 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.06 1.96 6.65 -2.39 -0.02 1.95 16 33 H 0.20 5.24 7.32 -2.91 -0.02 5.22 16 34 H 0.06 0.97 7.95 -2.39 -0.02 0.95 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.01 7.95 -2.39 -0.02 0.99 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -69.42 330.32 5.48 -63.94 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.94 Total: 9.35 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 6.49 Total: -6.55 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -3.64 Total: -109.96 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.04 Total: -8.15 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.73 Total: 51.37 kcal Total: -69.42 5.48 -63.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297698877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.262 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds