Wall clock time and date at job start Mon Mar 30 2020 00:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47262 * 2 1 4 4 C 1.36944 * 119.99787 * 83.12120 * 3 2 1 5 5 H 1.08000 * 119.99755 * 170.61321 * 4 3 2 6 6 C 1.38814 * 119.99618 * 350.61812 * 4 3 2 7 7 N 1.31618 * 120.00233 * 2.54859 * 6 4 3 8 8 Si 1.86800 * 119.99691 * 182.54517 * 6 4 3 9 9 H 1.48498 * 109.47236 * 89.99944 * 8 6 4 10 10 H 1.48503 * 109.47108 * 210.00278 * 8 6 4 11 11 H 1.48505 * 109.47058 * 330.00068 * 8 6 4 12 12 C 1.46494 * 120.00141 * 263.39712 * 3 2 1 13 13 H 1.09007 * 109.47213 * 173.44969 * 12 3 2 14 14 C 1.52998 * 109.47480 * 53.44639 * 12 3 2 15 15 C 1.50706 * 109.47379 * 293.44684 * 12 3 2 16 16 N 1.30257 * 125.61722 * 40.91566 * 15 12 3 17 17 C 1.34477 * 108.69860 * 179.84316 * 16 15 12 18 18 C 1.34330 * 107.66975 * 0.41690 * 17 16 15 19 19 C 1.50700 * 126.44233 * 179.76702 * 18 17 16 20 20 C 1.52999 * 109.47243 * 359.97438 * 19 18 17 21 21 C 1.53001 * 109.46814 * 119.98164 * 19 18 17 22 22 C 1.52999 * 109.47289 * 239.97973 * 19 18 17 23 23 O 1.33966 * 125.62095 * 221.22634 * 15 12 3 24 24 H 1.09006 * 109.47292 * 66.31706 * 1 2 3 25 25 H 1.09004 * 109.47548 * 186.31948 * 1 2 3 26 26 H 1.08999 * 109.47353 * 306.32122 * 1 2 3 27 27 H 1.09005 * 109.47155 * 240.00477 * 2 1 3 28 28 H 1.09002 * 109.47566 * 120.00572 * 2 1 3 29 29 H 0.97000 * 120.00032 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46556 * 59.99682 * 14 12 3 31 31 H 1.08995 * 109.47192 * 179.97438 * 14 12 3 32 32 H 1.08998 * 109.46988 * 300.00372 * 14 12 3 33 33 H 1.07998 * 126.15939 * 180.17045 * 17 16 15 34 34 H 1.08995 * 109.47017 * 59.99634 * 20 19 18 35 35 H 1.08992 * 109.47068 * 180.02562 * 20 19 18 36 36 H 1.09006 * 109.46683 * 299.99853 * 20 19 18 37 37 H 1.08993 * 109.47684 * 59.99757 * 21 19 18 38 38 H 1.09002 * 109.47067 * 180.02562 * 21 19 18 39 39 H 1.09002 * 109.46921 * 299.99569 * 21 19 18 40 40 H 1.08997 * 109.47116 * 60.00003 * 22 19 18 41 41 H 1.08997 * 109.47203 * 180.02562 * 22 19 18 42 42 H 1.09007 * 109.46856 * 300.00026 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1126 2.0740 1.1775 5 1 2.6111 3.0318 1.2019 6 6 1.5676 1.5452 2.3394 7 7 1.0045 0.3557 2.3202 8 14 1.6334 2.5218 3.9305 9 1 0.4189 3.3689 4.0420 10 1 1.6926 1.5871 5.0829 11 1 2.8413 3.3857 3.9313 12 6 2.4000 2.0231 -1.2602 13 1 2.6243 3.0744 -1.0792 14 6 1.2463 1.9125 -2.2590 15 6 3.6192 1.3392 -1.8234 16 7 3.8330 0.0543 -1.8302 17 6 5.0200 -0.1821 -2.4163 18 6 5.5447 1.0035 -2.7674 19 6 6.8688 1.2294 -3.4506 20 6 7.5527 -0.1172 -3.6954 21 6 6.6385 1.9353 -4.7884 22 6 7.7596 2.0995 -2.5616 23 8 4.6643 1.9529 -2.3942 24 1 -0.3634 0.4128 -0.9412 25 1 -0.3634 -1.0214 0.1131 26 1 -0.3634 0.6087 0.8280 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.6233 -0.0136 3.1321 30 1 0.3645 2.4072 -1.8517 31 1 1.5302 2.3905 -3.1965 32 1 1.0220 0.8613 -2.4400 33 1 5.4718 -1.1505 -2.5725 34 1 6.9181 -0.7371 -4.3287 35 1 8.5105 0.0462 -4.1891 36 1 7.7167 -0.6199 -2.7422 37 1 6.1514 2.8946 -4.6140 38 1 7.5962 2.0982 -5.2828 39 1 6.0040 1.3154 -5.4218 40 1 7.9236 1.5966 -1.6086 41 1 8.7171 2.2632 -3.0560 42 1 7.2724 3.0589 -2.3872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297698882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:30 Heat of formation + Delta-G solvation = 45.406815 kcal Electronic energy + Delta-G solvation = -21369.914173 eV Core-core repulsion = 18352.898143 eV Total energy + Delta-G solvation = -3017.016030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.68070 -37.16854 -36.45462 -33.95989 -32.52019 -29.82703 -28.65570 -28.15433 -27.35751 -27.31766 -24.16748 -22.91773 -22.24940 -21.02732 -19.38410 -19.30118 -16.79770 -16.45461 -15.99722 -15.15629 -14.93692 -14.21333 -14.10664 -13.75898 -13.47603 -13.07780 -12.98518 -12.40376 -12.28987 -12.15579 -11.92359 -11.79163 -11.72876 -11.40555 -11.26461 -11.09240 -10.96163 -10.84796 -10.70051 -10.56568 -10.51607 -10.38189 -9.90287 -9.83552 -9.47907 -9.14182 -8.29494 -8.05552 -6.91131 -5.58152 -3.13196 2.08580 3.17109 3.39386 3.42265 3.45515 3.46430 4.46364 4.60568 4.73216 4.83956 4.94172 5.24274 5.40391 5.44300 5.50528 5.51435 5.64237 5.65919 5.74676 5.75966 5.83785 5.94166 5.96733 6.04133 6.14058 6.20198 6.30213 6.39517 6.59347 6.63311 6.80826 6.95757 7.03531 7.20580 7.38510 7.46121 7.68760 8.05553 8.29955 8.53664 8.55641 9.29634 9.85814 10.28095 11.29842 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.005415 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.389541 B = 5169.919498 C = 5592.858064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.161 3.839 3 N -0.569 5.569 4 C -0.253 4.253 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.898 5.898 8 Si 0.912 3.088 9 H -0.287 1.287 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.258 3.742 13 H 0.086 0.914 14 C -0.148 4.148 15 C 0.199 3.801 16 N -0.476 5.476 17 C -0.042 4.042 18 C -0.068 4.068 19 C 0.024 3.976 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.142 4.142 23 O -0.208 6.208 24 H 0.003 0.997 25 H 0.018 0.982 26 H 0.080 0.920 27 H 0.030 0.970 28 H 0.096 0.904 29 H 0.249 0.751 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 1.549 -12.256 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.037 3.963 3 N -0.288 5.288 4 C -0.382 4.382 5 H 0.092 0.908 6 C -0.198 4.198 7 N -0.545 5.545 8 Si 0.743 3.257 9 H -0.215 1.215 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.144 3.856 13 H 0.104 0.896 14 C -0.207 4.207 15 C -0.012 4.012 16 N -0.204 5.204 17 C -0.181 4.181 18 C -0.121 4.121 19 C 0.024 3.976 20 C -0.197 4.197 21 C -0.198 4.198 22 C -0.199 4.199 23 O -0.095 6.095 24 H 0.022 0.978 25 H 0.037 0.963 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.187 0.813 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.116 1.035 -11.794 14.942 hybrid contribution 0.583 0.763 0.664 1.167 sum 9.698 1.798 -11.130 14.872 Atomic orbital electron populations 1.22414 0.99422 0.98724 0.98815 1.21139 0.91883 0.83175 1.00066 1.44268 1.72030 1.12307 1.00206 1.19402 1.31060 1.01608 0.86089 0.90836 1.24841 0.99700 0.97159 0.98138 1.70320 1.42259 1.15791 1.26114 0.86130 0.77697 0.78865 0.83054 1.21459 1.21700 1.20776 1.18788 0.84680 0.94844 0.87245 0.89628 1.22237 0.98558 1.02597 0.97356 1.29181 0.90472 0.87997 0.93506 1.70506 1.15964 1.15430 1.18466 1.23037 0.93809 0.98418 1.02803 1.23072 0.94587 0.87818 1.06657 1.18943 0.87350 0.97065 0.94290 1.21877 1.00200 0.95247 1.02386 1.21895 1.01789 1.00737 0.95397 1.21901 0.98741 0.99828 0.99468 1.84407 1.26691 1.39070 1.59356 0.97796 0.96336 0.90142 0.95193 0.88622 0.93956 0.91168 0.93712 0.91955 0.81330 0.91925 0.91531 0.91856 0.92129 0.91987 0.92331 0.92199 0.91985 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.07 37.15 0.34 -2.93 16 2 C 0.16 4.11 4.59 -4.05 -0.02 4.09 16 3 N -0.57 -14.29 2.43 -166.98 -0.41 -14.70 16 4 C -0.25 -6.83 9.75 -15.05 -0.15 -6.97 16 5 H 0.07 1.93 7.71 -52.49 -0.40 1.52 16 6 C 0.00 -0.05 5.18 -17.43 -0.09 -0.14 16 7 N -0.90 -25.14 7.31 55.49 0.41 -24.73 16 8 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.26 5.51 3.23 -69.08 -0.22 5.28 16 13 H 0.09 1.75 7.82 -51.92 -0.41 1.34 16 14 C -0.15 -2.74 8.08 37.16 0.30 -2.44 16 15 C 0.20 4.21 7.17 -12.94 -0.09 4.12 16 16 N -0.48 -10.29 9.08 -11.10 -0.10 -10.39 16 17 C -0.04 -0.76 10.84 -17.77 -0.19 -0.95 16 18 C -0.07 -1.12 5.81 -35.69 -0.21 -1.32 16 19 C 0.02 0.29 0.99 -155.66 -0.15 0.14 16 20 C -0.14 -1.35 7.39 37.16 0.27 -1.08 16 21 C -0.14 -1.48 8.46 37.16 0.31 -1.17 16 22 C -0.14 -1.62 8.46 37.16 0.31 -1.30 16 23 O -0.21 -4.01 10.78 5.37 0.06 -3.95 16 24 H 0.00 0.07 6.34 -51.93 -0.33 -0.26 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 27 H 0.03 0.75 5.81 -51.93 -0.30 0.45 16 28 H 0.10 2.77 5.90 -51.93 -0.31 2.47 16 29 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.22 6.57 -51.93 -0.34 0.87 16 33 H 0.17 2.52 7.32 -52.49 -0.38 2.14 16 34 H 0.06 0.59 7.95 -51.93 -0.41 0.17 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -29.62 328.54 -6.67 -36.30 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.97 Total: 0.56 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 0.41 Total: -4.69 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.10 Total: -49.82 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: 0.06 Total: -3.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.62 -6.67 -36.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297698882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.703 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds