Wall clock time and date at job start Mon Mar 30 2020 00:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47262 * 2 1 4 4 C 1.36944 * 119.99787 * 83.12120 * 3 2 1 5 5 H 1.08000 * 119.99755 * 170.61321 * 4 3 2 6 6 C 1.38814 * 119.99618 * 350.61812 * 4 3 2 7 7 N 1.31618 * 120.00233 * 2.54859 * 6 4 3 8 8 Si 1.86800 * 119.99691 * 182.54517 * 6 4 3 9 9 H 1.48498 * 109.47236 * 89.99944 * 8 6 4 10 10 H 1.48503 * 109.47108 * 210.00278 * 8 6 4 11 11 H 1.48505 * 109.47058 * 330.00068 * 8 6 4 12 12 C 1.46494 * 120.00141 * 263.39712 * 3 2 1 13 13 H 1.09007 * 109.47213 * 173.44969 * 12 3 2 14 14 C 1.52998 * 109.47480 * 53.44639 * 12 3 2 15 15 C 1.50706 * 109.47379 * 293.44684 * 12 3 2 16 16 N 1.30257 * 125.61722 * 40.91566 * 15 12 3 17 17 C 1.34477 * 108.69860 * 179.84316 * 16 15 12 18 18 C 1.34330 * 107.66975 * 0.41690 * 17 16 15 19 19 C 1.50700 * 126.44233 * 179.76702 * 18 17 16 20 20 C 1.52999 * 109.47243 * 359.97438 * 19 18 17 21 21 C 1.53001 * 109.46814 * 119.98164 * 19 18 17 22 22 C 1.52999 * 109.47289 * 239.97973 * 19 18 17 23 23 O 1.33966 * 125.62095 * 221.22634 * 15 12 3 24 24 H 1.09006 * 109.47292 * 66.31706 * 1 2 3 25 25 H 1.09004 * 109.47548 * 186.31948 * 1 2 3 26 26 H 1.08999 * 109.47353 * 306.32122 * 1 2 3 27 27 H 1.09005 * 109.47155 * 240.00477 * 2 1 3 28 28 H 1.09002 * 109.47566 * 120.00572 * 2 1 3 29 29 H 0.97000 * 120.00032 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46556 * 59.99682 * 14 12 3 31 31 H 1.08995 * 109.47192 * 179.97438 * 14 12 3 32 32 H 1.08998 * 109.46988 * 300.00372 * 14 12 3 33 33 H 1.07998 * 126.15939 * 180.17045 * 17 16 15 34 34 H 1.08995 * 109.47017 * 59.99634 * 20 19 18 35 35 H 1.08992 * 109.47068 * 180.02562 * 20 19 18 36 36 H 1.09006 * 109.46683 * 299.99853 * 20 19 18 37 37 H 1.08993 * 109.47684 * 59.99757 * 21 19 18 38 38 H 1.09002 * 109.47067 * 180.02562 * 21 19 18 39 39 H 1.09002 * 109.46921 * 299.99569 * 21 19 18 40 40 H 1.08997 * 109.47116 * 60.00003 * 22 19 18 41 41 H 1.08997 * 109.47203 * 180.02562 * 22 19 18 42 42 H 1.09007 * 109.46856 * 300.00026 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1126 2.0740 1.1775 5 1 2.6111 3.0318 1.2019 6 6 1.5676 1.5452 2.3394 7 7 1.0045 0.3557 2.3202 8 14 1.6334 2.5218 3.9305 9 1 0.4189 3.3689 4.0420 10 1 1.6926 1.5871 5.0829 11 1 2.8413 3.3857 3.9313 12 6 2.4000 2.0231 -1.2602 13 1 2.6243 3.0744 -1.0792 14 6 1.2463 1.9125 -2.2590 15 6 3.6192 1.3392 -1.8234 16 7 3.8330 0.0543 -1.8302 17 6 5.0200 -0.1821 -2.4163 18 6 5.5447 1.0035 -2.7674 19 6 6.8688 1.2294 -3.4506 20 6 7.5527 -0.1172 -3.6954 21 6 6.6385 1.9353 -4.7884 22 6 7.7596 2.0995 -2.5616 23 8 4.6643 1.9529 -2.3942 24 1 -0.3634 0.4128 -0.9412 25 1 -0.3634 -1.0214 0.1131 26 1 -0.3634 0.6087 0.8280 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.6233 -0.0136 3.1321 30 1 0.3645 2.4072 -1.8517 31 1 1.5302 2.3905 -3.1965 32 1 1.0220 0.8613 -2.4400 33 1 5.4718 -1.1505 -2.5725 34 1 6.9181 -0.7371 -4.3287 35 1 8.5105 0.0462 -4.1891 36 1 7.7167 -0.6199 -2.7422 37 1 6.1514 2.8946 -4.6140 38 1 7.5962 2.0982 -5.2828 39 1 6.0040 1.3154 -5.4218 40 1 7.9236 1.5966 -1.6086 41 1 8.7171 2.2632 -3.0560 42 1 7.2724 3.0589 -2.3872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297698882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:29 Heat of formation + Delta-G solvation = 28.221059 kcal Electronic energy + Delta-G solvation = -21370.659403 eV Core-core repulsion = 18352.898143 eV Total energy + Delta-G solvation = -3017.761261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.16527 -38.64882 -37.80417 -35.51483 -34.34861 -31.76137 -30.52565 -29.54237 -28.21450 -28.19462 -26.04566 -24.59450 -23.62761 -22.84191 -21.08206 -20.49464 -18.77755 -17.83587 -17.49798 -17.09260 -16.16938 -15.65944 -15.28024 -15.11030 -14.93931 -14.82848 -14.22997 -13.92950 -13.81209 -13.42142 -13.16087 -13.11678 -13.01813 -12.71397 -12.63330 -12.59746 -12.46301 -12.33812 -12.23618 -12.12324 -11.98031 -11.88707 -11.81280 -11.57490 -11.39696 -10.93869 -10.33685 -9.48266 -8.90185 -7.63776 -5.20148 0.64298 1.48799 1.49604 1.57917 1.78685 1.91361 2.52837 3.22086 3.44468 3.57725 3.73162 3.90142 3.96154 4.14297 4.27567 4.35042 4.43850 4.67110 4.71239 4.78518 4.82551 4.85246 4.89913 4.95089 4.99246 5.02315 5.08205 5.13779 5.23962 5.27427 5.29413 5.33519 5.34169 5.44253 5.45883 5.56513 5.61782 5.98711 6.27295 6.46837 7.02584 7.23263 7.88542 8.27866 9.23056 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.005415 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.389541 B = 5169.919498 C = 5592.858064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.176 3.824 3 N -0.585 5.585 4 C -0.265 4.265 5 H 0.076 0.924 6 C -0.051 4.051 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.283 1.283 10 H -0.297 1.297 11 H -0.276 1.276 12 C 0.254 3.746 13 H 0.090 0.910 14 C -0.135 4.135 15 C 0.176 3.824 16 N -0.503 5.503 17 C -0.066 4.066 18 C -0.049 4.049 19 C 0.020 3.980 20 C -0.138 4.138 21 C -0.138 4.138 22 C -0.141 4.141 23 O -0.215 6.215 24 H 0.021 0.979 25 H 0.022 0.978 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.243 0.757 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.194 0.806 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.095 0.905 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.332 2.246 -13.935 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 N -0.305 5.305 4 C -0.394 4.394 5 H 0.094 0.906 6 C -0.245 4.245 7 N -0.566 5.566 8 Si 0.802 3.198 9 H -0.210 1.210 10 H -0.224 1.224 11 H -0.202 1.202 12 C 0.143 3.857 13 H 0.108 0.892 14 C -0.194 4.194 15 C -0.034 4.034 16 N -0.232 5.232 17 C -0.204 4.204 18 C -0.103 4.103 19 C 0.020 3.980 20 C -0.195 4.195 21 C -0.195 4.195 22 C -0.198 4.198 23 O -0.101 6.101 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.211 0.789 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.845 1.756 -13.510 17.414 hybrid contribution 0.196 0.543 1.070 1.216 sum 11.042 2.299 -12.440 16.792 Atomic orbital electron populations 1.22207 0.98626 0.98510 0.98548 1.20800 0.92384 0.83527 0.98118 1.44311 1.73004 1.12082 1.01107 1.19681 1.30765 1.01821 0.87118 0.90638 1.25539 0.99980 0.98131 1.00836 1.70529 1.43029 1.16880 1.26201 0.85180 0.77769 0.77474 0.79371 1.21017 1.22363 1.20174 1.18956 0.85562 0.94672 0.86541 0.89237 1.22093 0.97404 1.02092 0.97858 1.28664 0.91207 0.88032 0.95510 1.70422 1.17882 1.15874 1.19021 1.23474 0.93241 1.00170 1.03531 1.24055 0.95029 0.86843 1.04329 1.19308 0.84982 0.99021 0.94719 1.21906 1.01370 0.93615 1.02575 1.21889 1.03417 0.99745 0.94443 1.21911 1.00030 0.98660 0.99204 1.84386 1.26748 1.39685 1.59331 0.95979 0.95935 0.92757 0.94984 0.92438 0.94678 0.91119 0.90823 0.93157 0.78935 0.91589 0.88612 0.92357 0.93351 0.88880 0.92447 0.93387 0.88656 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 9.07 71.98 0.65 -5.24 16 2 C 0.18 9.19 4.59 86.38 0.40 9.59 16 3 N -0.58 -29.82 2.43 -682.20 -1.66 -31.48 16 4 C -0.26 -14.49 9.75 84.03 0.82 -13.68 16 5 H 0.08 3.99 7.71 -2.91 -0.02 3.97 16 6 C -0.05 -2.81 5.18 84.86 0.44 -2.37 16 7 N -0.92 -52.84 7.31 21.65 0.16 -52.68 16 8 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.25 10.86 3.23 44.25 0.14 11.00 16 13 H 0.09 3.66 7.82 -2.38 -0.02 3.64 16 14 C -0.14 -4.89 8.08 71.98 0.58 -4.31 16 15 C 0.18 7.44 7.17 88.34 0.63 8.07 16 16 N -0.50 -21.82 9.08 -303.82 -2.76 -24.58 16 17 C -0.07 -2.33 10.84 83.39 0.90 -1.43 16 18 C -0.05 -1.56 5.81 24.79 0.14 -1.42 16 19 C 0.02 0.44 0.99 -52.93 -0.05 0.38 16 20 C -0.14 -2.20 7.39 71.98 0.53 -1.67 16 21 C -0.14 -2.47 8.46 71.98 0.61 -1.86 16 22 C -0.14 -2.85 8.46 71.98 0.61 -2.25 16 23 O -0.21 -8.14 10.78 -3.70 -0.04 -8.18 16 24 H 0.02 0.96 6.34 -2.38 -0.02 0.94 16 25 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.05 2.97 6.07 -2.39 -0.01 2.95 16 27 H 0.03 1.64 5.81 -2.38 -0.01 1.62 16 28 H 0.06 3.46 5.90 -2.39 -0.01 3.44 16 29 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.07 2.52 8.04 -2.38 -0.02 2.50 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.93 6.57 -2.39 -0.02 1.91 16 33 H 0.19 5.52 7.32 -2.91 -0.02 5.50 16 34 H 0.07 1.03 7.95 -2.39 -0.02 1.01 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.00 7.95 -2.38 -0.02 0.98 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -65.09 328.54 5.12 -59.97 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.98 Total: 14.90 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 6.41 Total: -5.16 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.26 Total: -108.75 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.04 Total: -8.18 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.09 5.12 -59.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297698882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.186 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds