Wall clock time and date at job start Mon Mar 30 2020 01:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99980 * 2 1 4 4 C 1.52993 * 109.47427 * 293.95429 * 3 2 1 5 5 H 1.09001 * 109.47303 * 54.99963 * 4 3 2 6 6 C 1.47204 * 109.47415 * 295.00251 * 4 3 2 7 7 N 3.66499 * 112.02472 * 284.54424 * 2 1 3 8 8 C 1.52996 * 109.47203 * 175.00151 * 4 3 2 9 9 C 1.50706 * 109.46968 * 185.00126 * 8 4 3 10 10 H 1.07991 * 120.00427 * 0.02562 * 9 8 4 11 11 C 1.37886 * 119.99609 * 180.02562 * 9 8 4 12 12 N 1.31508 * 119.99641 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00114 * 359.97438 * 11 9 8 14 14 H 1.48491 * 109.47249 * 90.00487 * 13 11 9 15 15 H 1.48508 * 109.46867 * 210.00267 * 13 11 9 16 16 H 1.48506 * 109.47198 * 329.99899 * 13 11 9 17 17 C 1.46894 * 111.00145 * 123.96057 * 2 1 3 18 18 C 1.53000 * 109.47542 * 163.87024 * 17 2 1 19 19 H 1.08999 * 110.01260 * 55.87337 * 18 17 2 20 20 C 1.54266 * 110.03252 * 294.48210 * 18 17 2 21 21 C 1.55010 * 104.13610 * 217.06436 * 20 18 17 22 22 C 1.54891 * 102.75678 * 37.95310 * 21 20 18 23 23 C 1.53872 * 110.03313 * 177.26136 * 18 17 2 24 24 H 1.08999 * 110.03584 * 238.61629 * 23 18 17 25 25 O 1.42902 * 110.03439 * 0.05297 * 23 18 17 26 26 H 1.08995 * 109.46790 * 302.24750 * 1 2 3 27 27 H 1.08996 * 109.47181 * 62.24339 * 1 2 3 28 28 H 1.08999 * 109.46744 * 182.24573 * 1 2 3 29 29 H 1.09000 * 109.47056 * 53.96121 * 3 2 1 30 30 H 1.09007 * 109.46960 * 173.95871 * 3 2 1 31 31 H 1.08999 * 109.47360 * 304.99984 * 8 4 3 32 32 H 1.08998 * 109.47428 * 65.00662 * 8 4 3 33 33 H 0.97002 * 120.00161 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.47665 * 43.86440 * 17 2 1 35 35 H 1.09006 * 109.47238 * 283.87250 * 17 2 1 36 36 H 1.09002 * 110.48684 * 335.73112 * 20 18 17 37 37 H 1.08997 * 110.48419 * 98.37387 * 20 18 17 38 38 H 1.08993 * 110.76381 * 279.62791 * 21 20 18 39 39 H 1.09001 * 110.89714 * 156.33352 * 21 20 18 40 40 H 1.08993 * 110.48799 * 203.37061 * 22 21 20 41 41 H 1.09004 * 110.59718 * 80.77436 * 22 21 20 42 42 H 0.96698 * 113.99744 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 1 0.5533 2.0059 -1.4691 6 6 2.3156 1.3778 -2.4304 7 7 2.8435 0.8532 -3.2887 8 6 2.0701 3.5224 -1.2688 9 6 1.6032 4.2288 -2.5154 10 1 1.0488 3.6873 -3.2675 11 6 1.8839 5.5667 -2.6958 12 7 1.4760 6.1833 -3.7834 13 14 2.8423 6.5036 -1.3946 14 1 4.2948 6.4143 -1.6895 15 1 2.4226 7.9282 -1.4008 16 1 2.5710 5.9135 -0.0591 17 6 1.9955 -0.7661 1.1374 18 6 3.4720 -1.0871 0.8967 19 1 4.0295 -0.1674 0.7190 20 6 3.6165 -2.0346 -0.3121 21 6 4.7777 -2.9813 0.0856 22 6 4.5340 -3.2043 1.5989 23 6 4.0547 -1.8304 2.1114 24 1 4.8951 -1.2716 2.5232 25 8 3.0462 -2.0047 3.1087 26 1 -0.3633 0.5483 0.8691 27 1 -0.3633 0.4786 -0.9094 28 1 -0.3633 -1.0269 0.0403 29 1 1.5612 1.9273 0.8310 30 1 3.0798 1.3443 0.1082 31 1 1.6332 4.0031 -0.3935 32 1 3.1571 3.5744 -1.2073 33 1 1.6738 7.1244 -3.9105 34 1 1.4341 -1.6946 1.2413 35 1 1.8957 -0.1774 2.0494 36 1 2.6976 -2.6007 -0.4651 37 1 3.8727 -1.4716 -1.2096 38 1 5.7420 -2.5024 -0.0840 39 1 4.7149 -3.9236 -0.4587 40 1 5.4597 -3.4949 2.0956 41 1 3.7643 -3.9599 1.7561 42 1 3.3522 -2.4672 3.9008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305272905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:18 Heat of formation + Delta-G solvation = -38.352543 kcal Electronic energy + Delta-G solvation = -20687.290649 eV Core-core repulsion = 17666.642540 eV Total energy + Delta-G solvation = -3020.648109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.48725 -37.72393 -35.65392 -34.97791 -33.54553 -31.84614 -30.14262 -27.68661 -27.67715 -25.83484 -23.99851 -21.48725 -21.38385 -20.89738 -19.53584 -17.55269 -16.85108 -16.79217 -15.83672 -15.27063 -14.90444 -14.58309 -14.46580 -14.06928 -13.76642 -13.49673 -13.16680 -12.88600 -12.50277 -12.44747 -12.08306 -11.92018 -11.74022 -11.60091 -11.34919 -11.27571 -11.20211 -11.11875 -10.81451 -10.66567 -10.63351 -10.56428 -10.18502 -9.99296 -9.89116 -9.70663 -9.29471 -8.59913 -8.11681 -6.08884 -4.09180 3.27959 3.35631 3.35902 3.74513 3.83504 3.98232 4.07405 4.39833 4.45103 4.54717 4.80427 4.86812 5.08166 5.18145 5.26174 5.31131 5.34699 5.45973 5.51727 5.56830 5.57435 5.64162 5.69691 5.80959 5.86708 5.91985 5.96585 6.06319 6.10137 6.11803 6.27180 6.32128 6.37380 6.40353 6.97795 7.12724 7.20497 7.25853 7.47200 7.66254 8.43045 8.60065 8.95112 9.51177 11.04303 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.004441 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.682022 B = 6303.581172 C = 6422.188398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.058 3.942 4 C 0.019 3.981 5 H 0.105 0.895 6 C 0.255 3.745 7 N -0.473 5.473 8 C -0.005 4.005 9 C -0.526 4.526 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.897 5.897 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.263 1.263 17 C 0.079 3.921 18 C -0.084 4.084 19 H 0.079 0.921 20 C -0.103 4.103 21 C -0.127 4.127 22 C -0.156 4.156 23 C 0.103 3.897 24 H 0.056 0.944 25 O -0.561 6.561 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.020 0.980 33 H 0.264 0.736 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.231 -16.676 15.829 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.002 4.002 5 H 0.123 0.877 6 C -0.062 4.062 7 N -0.150 5.150 8 C -0.044 4.044 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.048 4.048 18 C -0.102 4.102 19 H 0.098 0.902 20 C -0.141 4.141 21 C -0.165 4.165 22 C -0.194 4.194 23 C 0.044 3.956 24 H 0.074 0.926 25 O -0.366 6.366 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.804 -17.205 13.561 22.234 hybrid contribution 0.445 1.003 1.983 2.266 sum 4.249 -16.202 15.543 22.850 Atomic orbital electron populations 1.22418 0.87311 1.01520 1.01268 1.61995 1.07883 1.13841 1.43320 1.22303 1.00749 0.87716 0.96311 1.18990 0.99677 0.95224 0.86356 0.87703 1.28694 0.92857 0.91205 0.93467 1.80982 1.10560 1.12213 1.11197 1.19643 0.96990 0.88719 0.99088 1.21035 1.36601 0.95070 1.03718 0.90786 1.24986 0.95236 0.97559 0.95298 1.69905 1.46252 1.10963 1.26445 0.86825 0.80657 0.79289 0.82821 1.20254 1.21272 1.18762 1.21797 0.94216 0.97912 0.90895 1.21847 0.96819 0.98505 0.93078 0.90247 1.22272 0.97925 0.96419 0.97459 1.22485 0.99239 0.99925 0.94846 1.23099 1.01115 0.97941 0.97205 1.22532 0.89586 0.94842 0.88660 0.92574 1.86583 1.38929 1.81002 1.30127 0.95476 0.90786 0.91854 0.93029 0.90456 0.94611 0.96186 0.92593 0.90695 0.94235 0.91266 0.91004 0.91569 0.91546 0.91845 0.90713 0.78123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.28 60.07 0.56 0.84 16 2 N -0.55 -7.40 4.18 -242.92 -1.02 -8.41 16 3 C 0.06 0.86 4.17 -3.83 -0.02 0.84 16 4 C 0.02 0.35 2.13 -93.41 -0.20 0.16 16 5 H 0.11 1.84 6.38 -51.93 -0.33 1.51 16 6 C 0.25 5.33 13.67 -20.76 -0.28 5.05 16 7 N -0.47 -10.75 18.54 42.15 0.78 -9.97 16 8 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 9 C -0.53 -14.33 9.15 -34.43 -0.32 -14.64 16 10 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 13 Si 0.88 20.82 27.47 -169.99 -4.67 16.16 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 17 C 0.08 0.96 3.29 -3.83 -0.01 0.95 16 18 C -0.08 -0.96 2.94 -89.50 -0.26 -1.23 16 19 H 0.08 0.98 6.52 -51.93 -0.34 0.64 16 20 C -0.10 -1.23 6.15 -25.01 -0.15 -1.38 16 21 C -0.13 -1.23 6.91 -24.67 -0.17 -1.40 16 22 C -0.16 -1.29 6.56 -25.07 -0.16 -1.45 16 23 C 0.10 0.96 4.24 -25.61 -0.11 0.85 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 O -0.56 -5.07 11.43 -35.23 -0.40 -5.47 16 26 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 27 H 0.07 0.95 6.47 -51.93 -0.34 0.61 16 28 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 29 H 0.05 0.71 8.11 -51.93 -0.42 0.28 16 30 H 0.08 1.13 6.37 -51.93 -0.33 0.80 16 31 H 0.04 0.74 7.20 -51.93 -0.37 0.37 16 32 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.07 0.92 7.61 -51.93 -0.40 0.52 16 35 H 0.04 0.50 7.66 -51.93 -0.40 0.10 16 36 H 0.07 0.86 7.80 -51.93 -0.40 0.45 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 42 H 0.37 1.82 9.11 45.56 0.42 2.24 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -31.78 335.57 -7.05 -38.84 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.25 Total: -0.01 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.32 Total: -9.71 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.54 Total: -44.86 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.40 Total: -5.47 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.78 -7.05 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305272905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.485 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds