Wall clock time and date at job start Mon Mar 30 2020 01:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99980 * 2 1 4 4 C 1.52993 * 109.47427 * 293.95429 * 3 2 1 5 5 H 1.09001 * 109.47303 * 54.99963 * 4 3 2 6 6 C 1.47204 * 109.47415 * 295.00251 * 4 3 2 7 7 N 3.66499 * 112.02472 * 284.54424 * 2 1 3 8 8 C 1.52996 * 109.47203 * 175.00151 * 4 3 2 9 9 C 1.50706 * 109.46968 * 185.00126 * 8 4 3 10 10 H 1.07991 * 120.00427 * 0.02562 * 9 8 4 11 11 C 1.37886 * 119.99609 * 180.02562 * 9 8 4 12 12 N 1.31508 * 119.99641 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00114 * 359.97438 * 11 9 8 14 14 H 1.48491 * 109.47249 * 90.00487 * 13 11 9 15 15 H 1.48508 * 109.46867 * 210.00267 * 13 11 9 16 16 H 1.48506 * 109.47198 * 329.99899 * 13 11 9 17 17 C 1.46894 * 111.00145 * 123.96057 * 2 1 3 18 18 C 1.53000 * 109.47542 * 163.87024 * 17 2 1 19 19 H 1.08999 * 110.01260 * 55.87337 * 18 17 2 20 20 C 1.54266 * 110.03252 * 294.48210 * 18 17 2 21 21 C 1.55010 * 104.13610 * 217.06436 * 20 18 17 22 22 C 1.54891 * 102.75678 * 37.95310 * 21 20 18 23 23 C 1.53872 * 110.03313 * 177.26136 * 18 17 2 24 24 H 1.08999 * 110.03584 * 238.61629 * 23 18 17 25 25 O 1.42902 * 110.03439 * 0.05297 * 23 18 17 26 26 H 1.08995 * 109.46790 * 302.24750 * 1 2 3 27 27 H 1.08996 * 109.47181 * 62.24339 * 1 2 3 28 28 H 1.08999 * 109.46744 * 182.24573 * 1 2 3 29 29 H 1.09000 * 109.47056 * 53.96121 * 3 2 1 30 30 H 1.09007 * 109.46960 * 173.95871 * 3 2 1 31 31 H 1.08999 * 109.47360 * 304.99984 * 8 4 3 32 32 H 1.08998 * 109.47428 * 65.00662 * 8 4 3 33 33 H 0.97002 * 120.00161 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.47665 * 43.86440 * 17 2 1 35 35 H 1.09006 * 109.47238 * 283.87250 * 17 2 1 36 36 H 1.09002 * 110.48684 * 335.73112 * 20 18 17 37 37 H 1.08997 * 110.48419 * 98.37387 * 20 18 17 38 38 H 1.08993 * 110.76381 * 279.62791 * 21 20 18 39 39 H 1.09001 * 110.89714 * 156.33352 * 21 20 18 40 40 H 1.08993 * 110.48799 * 203.37061 * 22 21 20 41 41 H 1.09004 * 110.59718 * 80.77436 * 22 21 20 42 42 H 0.96698 * 113.99744 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 1 0.5533 2.0059 -1.4691 6 6 2.3156 1.3778 -2.4304 7 7 2.8435 0.8532 -3.2887 8 6 2.0701 3.5224 -1.2688 9 6 1.6032 4.2288 -2.5154 10 1 1.0488 3.6873 -3.2675 11 6 1.8839 5.5667 -2.6958 12 7 1.4760 6.1833 -3.7834 13 14 2.8423 6.5036 -1.3946 14 1 4.2948 6.4143 -1.6895 15 1 2.4226 7.9282 -1.4008 16 1 2.5710 5.9135 -0.0591 17 6 1.9955 -0.7661 1.1374 18 6 3.4720 -1.0871 0.8967 19 1 4.0295 -0.1674 0.7190 20 6 3.6165 -2.0346 -0.3121 21 6 4.7777 -2.9813 0.0856 22 6 4.5340 -3.2043 1.5989 23 6 4.0547 -1.8304 2.1114 24 1 4.8951 -1.2716 2.5232 25 8 3.0462 -2.0047 3.1087 26 1 -0.3633 0.5483 0.8691 27 1 -0.3633 0.4786 -0.9094 28 1 -0.3633 -1.0269 0.0403 29 1 1.5612 1.9273 0.8310 30 1 3.0798 1.3443 0.1082 31 1 1.6332 4.0031 -0.3935 32 1 3.1571 3.5744 -1.2073 33 1 1.6738 7.1244 -3.9105 34 1 1.4341 -1.6946 1.2413 35 1 1.8957 -0.1774 2.0494 36 1 2.6976 -2.6007 -0.4651 37 1 3.8727 -1.4716 -1.2096 38 1 5.7420 -2.5024 -0.0840 39 1 4.7149 -3.9236 -0.4587 40 1 5.4597 -3.4949 2.0956 41 1 3.7643 -3.9599 1.7561 42 1 3.3522 -2.4672 3.9008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305272905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:18 Heat of formation + Delta-G solvation = -60.625894 kcal Electronic energy + Delta-G solvation = -20688.256494 eV Core-core repulsion = 17666.642540 eV Total energy + Delta-G solvation = -3021.613954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.35947 -38.91560 -37.05825 -35.80677 -35.36788 -33.67060 -31.08934 -29.29141 -28.44984 -26.91130 -25.31384 -23.24231 -22.51661 -21.67163 -20.41293 -18.90122 -18.39221 -18.14621 -16.74568 -16.64767 -16.02119 -15.78589 -15.56793 -15.24534 -14.88535 -14.66031 -14.58519 -14.34389 -14.02110 -13.78178 -13.31022 -13.18791 -13.12208 -12.87380 -12.69346 -12.61574 -12.45070 -12.19455 -11.91407 -11.81609 -11.71594 -11.65314 -11.50928 -11.38418 -11.36976 -11.17968 -10.73676 -10.66582 -9.13598 -8.24627 -6.30222 1.42972 1.43859 1.55108 2.07015 2.14714 2.40906 2.97482 3.11880 3.33494 3.40893 3.68204 3.77525 3.94289 4.11340 4.26282 4.35030 4.44777 4.51162 4.55713 4.63446 4.66215 4.70052 4.72374 4.83038 4.86692 4.92082 5.00034 5.04463 5.09177 5.15604 5.22176 5.24744 5.33833 5.37951 5.44135 5.49538 5.63339 6.14766 6.25905 6.28183 6.76980 6.92354 7.01347 7.34110 8.92380 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.004441 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.682022 B = 6303.581172 C = 6422.188398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.561 5.561 3 C 0.068 3.932 4 C 0.025 3.975 5 H 0.112 0.888 6 C 0.264 3.736 7 N -0.512 5.512 8 C -0.002 4.002 9 C -0.530 4.530 10 H 0.028 0.972 11 C 0.004 3.996 12 N -0.954 5.954 13 Si 0.947 3.053 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.225 1.225 17 C 0.089 3.911 18 C -0.088 4.088 19 H 0.069 0.931 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.146 4.146 23 C 0.109 3.891 24 H 0.067 0.933 25 O -0.574 6.574 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.265 0.735 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.050 -17.376 19.362 26.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.285 5.285 3 C -0.061 4.061 4 C 0.003 3.997 5 H 0.129 0.871 6 C -0.053 4.053 7 N -0.189 5.189 8 C -0.041 4.041 9 C -0.568 4.568 10 H 0.047 0.953 11 C -0.192 4.192 12 N -0.594 5.594 13 Si 0.770 3.230 14 H -0.201 1.201 15 H -0.214 1.214 16 H -0.147 1.147 17 C -0.038 4.038 18 C -0.107 4.107 19 H 0.088 0.912 20 C -0.139 4.139 21 C -0.164 4.164 22 C -0.184 4.184 23 C 0.049 3.951 24 H 0.085 0.915 25 O -0.382 6.382 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.618 -17.946 17.129 25.235 hybrid contribution 0.115 1.151 0.788 1.400 sum 4.733 -16.795 17.917 25.009 Atomic orbital electron populations 1.22442 0.86526 1.02367 1.01242 1.61945 1.08757 1.13277 1.44521 1.22157 1.01167 0.88429 0.94303 1.19068 0.99666 0.93529 0.87423 0.87060 1.29329 0.92108 0.90505 0.93331 1.80973 1.11938 1.13558 1.12465 1.19587 0.97219 0.90246 0.97088 1.21381 1.35451 0.95240 1.04776 0.95342 1.26023 0.96546 0.98873 0.97788 1.70085 1.48627 1.11438 1.29283 0.85711 0.78536 0.77513 0.81249 1.20127 1.21417 1.14739 1.21719 0.94430 0.97486 0.90143 1.21869 0.96525 0.98268 0.94061 0.91250 1.22179 0.98477 0.96691 0.96600 1.22483 0.98206 0.99494 0.96230 1.23037 1.02074 0.97453 0.95819 1.22415 0.89593 0.95092 0.87986 0.91535 1.86526 1.39193 1.81490 1.31004 0.94187 0.91905 0.90795 0.90891 0.90211 0.92018 0.95663 0.92633 0.90713 0.94082 0.92147 0.94137 0.91488 0.91102 0.89856 0.90576 0.75900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.28 127.69 1.18 1.68 16 2 N -0.56 -14.25 4.18 -922.46 -3.86 -18.11 16 3 C 0.07 1.85 4.17 86.30 0.36 2.21 16 4 C 0.02 0.89 2.13 -12.60 -0.03 0.86 16 5 H 0.11 3.83 6.38 -2.39 -0.02 3.82 16 6 C 0.26 11.13 13.67 89.44 1.22 12.35 16 7 N -0.51 -23.84 18.54 20.01 0.37 -23.47 16 8 C 0.00 -0.10 3.49 29.85 0.10 0.00 16 9 C -0.53 -29.16 9.15 25.60 0.23 -28.93 16 10 H 0.03 1.77 7.84 -2.92 -0.02 1.75 16 11 C 0.00 0.25 5.47 84.66 0.46 0.71 16 12 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 13 Si 0.95 41.94 27.47 68.60 1.88 43.82 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.22 -8.53 6.54 99.48 0.65 -7.88 16 17 C 0.09 1.98 3.29 86.30 0.28 2.27 16 18 C -0.09 -1.89 2.94 -10.07 -0.03 -1.92 16 19 H 0.07 1.62 6.52 -2.39 -0.02 1.60 16 20 C -0.10 -2.38 6.15 31.71 0.19 -2.18 16 21 C -0.13 -2.26 6.91 31.93 0.22 -2.04 16 22 C -0.15 -2.01 6.56 31.67 0.21 -1.81 16 23 C 0.11 1.72 4.24 31.32 0.13 1.86 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 O -0.57 -8.58 11.43 -148.98 -1.70 -10.28 16 26 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16 27 H 0.06 1.54 6.47 -2.39 -0.02 1.53 16 28 H 0.07 1.49 7.95 -2.39 -0.02 1.47 16 29 H 0.07 1.71 8.11 -2.39 -0.02 1.69 16 30 H 0.08 2.15 6.37 -2.38 -0.02 2.13 16 31 H 0.06 2.30 7.20 -2.39 -0.02 2.29 16 32 H 0.03 1.04 7.57 -2.39 -0.02 1.02 16 33 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 34 H 0.07 1.67 7.61 -2.39 -0.02 1.65 16 35 H 0.04 0.91 7.66 -2.38 -0.02 0.89 16 36 H 0.06 1.48 7.80 -2.39 -0.02 1.47 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.08 1.05 8.08 -2.38 -0.02 1.03 16 42 H 0.39 2.49 9.11 -74.06 -0.67 1.81 16 Total: -1.00 -70.50 335.57 1.82 -68.69 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.27 Total: 13.57 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 4.55 Total: -14.94 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -3.19 Total: -100.87 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.70 Total: -10.28 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.82 kcal Total: -70.50 1.82 -68.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305272905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.061 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds