Wall clock time and date at job start Mon Mar 30 2020 01:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00108 * 2 1 4 4 C 1.53000 * 109.47005 * 293.95445 * 3 2 1 5 5 H 1.08992 * 109.47199 * 55.00342 * 4 3 2 6 6 C 1.47200 * 109.47217 * 294.99815 * 4 3 2 7 7 N 3.66503 * 112.02743 * 284.54264 * 2 1 3 8 8 C 1.53000 * 109.46738 * 175.00262 * 4 3 2 9 9 C 1.50708 * 109.46973 * 184.99920 * 8 4 3 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 8 4 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 8 4 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.46899 * 111.00039 * 123.95854 * 2 1 3 18 18 C 1.52997 * 109.47495 * 66.04444 * 17 2 1 19 19 H 1.09003 * 110.01832 * 305.70199 * 18 17 2 20 20 C 1.54260 * 110.03453 * 67.09132 * 18 17 2 21 21 C 1.54891 * 104.19788 * 142.89595 * 20 18 17 22 22 C 1.54898 * 102.74835 * 322.06242 * 21 20 18 23 23 C 1.53872 * 110.03507 * 184.31305 * 18 17 2 24 24 H 1.09002 * 110.03557 * 121.42439 * 23 18 17 25 25 O 1.42907 * 110.03303 * 359.97438 * 23 18 17 26 26 H 1.08998 * 109.47051 * 60.00256 * 1 2 3 27 27 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47135 * 299.99988 * 1 2 3 29 29 H 1.09004 * 109.46957 * 173.95621 * 3 2 1 30 30 H 1.09001 * 109.46896 * 53.95697 * 3 2 1 31 31 H 1.08994 * 109.48028 * 64.99977 * 8 4 3 32 32 H 1.09000 * 109.47206 * 304.99831 * 8 4 3 33 33 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 34 34 H 1.09000 * 109.47139 * 186.04664 * 17 2 1 35 35 H 1.09007 * 109.46885 * 306.04542 * 17 2 1 36 36 H 1.08997 * 110.48794 * 261.57786 * 20 18 17 37 37 H 1.09001 * 110.48304 * 24.22252 * 20 18 17 38 38 H 1.09004 * 110.75694 * 80.37537 * 21 20 18 39 39 H 1.08995 * 110.76116 * 203.74982 * 21 20 18 40 40 H 1.08991 * 110.48772 * 156.62098 * 22 21 20 41 41 H 1.09004 * 110.48211 * 279.13126 * 22 21 20 42 42 H 0.96700 * 114.00000 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 1 0.5533 2.0058 -1.4690 6 6 2.3156 1.3777 -2.4304 7 7 2.8436 0.8531 -3.2886 8 6 2.0701 3.5223 -1.2688 9 6 1.6032 4.2288 -2.5155 10 1 1.0488 3.6872 -3.2675 11 6 1.8830 5.5668 -2.6955 12 7 1.4752 6.1834 -3.7832 13 14 2.8414 6.5038 -1.3943 14 1 1.8967 7.0890 -0.4092 15 1 3.6197 7.5913 -2.0400 16 1 3.7697 5.5762 -0.6993 17 6 1.9955 -0.7661 1.1375 18 6 1.6315 -2.2427 0.9703 19 1 0.5557 -2.3482 0.8300 20 6 2.3828 -2.8386 -0.2381 21 6 2.7401 -4.2779 0.2089 22 6 3.0941 -4.0931 1.7055 23 6 2.0825 -3.0401 2.2065 24 1 1.2258 -3.5332 2.6658 25 8 2.7101 -2.1684 3.1491 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.0798 1.3443 0.1082 30 1 1.5611 1.9273 0.8310 31 1 3.1570 3.5744 -1.2073 32 1 1.6332 4.0031 -0.3936 33 1 1.6724 7.1247 -3.9099 34 1 3.0797 -0.6612 1.1756 35 1 1.5611 -0.3873 2.0628 36 1 1.7368 -2.8609 -1.1157 37 1 3.2880 -2.2673 -0.4439 38 1 1.8834 -4.9420 0.0937 39 1 3.5988 -4.6533 -0.3476 40 1 2.9672 -5.0309 2.2461 41 1 4.1149 -3.7266 1.8136 42 1 3.0173 -2.6123 3.9514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305272909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:26 Heat of formation + Delta-G solvation = -37.641238 kcal Electronic energy + Delta-G solvation = -20479.827351 eV Core-core repulsion = 17459.210087 eV Total energy + Delta-G solvation = -3020.617264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.52211 -37.73932 -35.70881 -34.99015 -33.55076 -31.91021 -29.94138 -27.73884 -27.57030 -26.33645 -23.78861 -21.44797 -21.37760 -20.94060 -19.57608 -17.58799 -16.86796 -16.67310 -16.10333 -15.10638 -15.00342 -14.78992 -14.31244 -14.08845 -13.83332 -13.54388 -13.17217 -12.91512 -12.54224 -12.38674 -12.12851 -11.87553 -11.74445 -11.57015 -11.36127 -11.23632 -11.19647 -11.14282 -10.83684 -10.69203 -10.65000 -10.61298 -10.31723 -10.04037 -9.85898 -9.66609 -9.27699 -8.58875 -8.11773 -6.07897 -4.08175 3.28141 3.36991 3.38704 3.75212 3.85017 3.95810 4.04370 4.39209 4.41128 4.49250 4.75575 4.88639 5.05408 5.11867 5.27112 5.28973 5.30701 5.39944 5.46207 5.53091 5.55463 5.59489 5.65625 5.77899 5.85416 5.87933 5.96537 6.03578 6.07177 6.11493 6.21280 6.29885 6.36594 6.38786 6.96864 7.15727 7.21504 7.24241 7.45452 7.67452 8.44060 8.61523 8.96011 9.52253 11.05288 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030977 B = 0.004033 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.675044 B = 6941.507780 C = 7308.192826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.546 5.546 3 C 0.062 3.938 4 C 0.020 3.980 5 H 0.105 0.895 6 C 0.255 3.745 7 N -0.474 5.474 8 C -0.006 4.006 9 C -0.526 4.526 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.264 1.264 17 C 0.078 3.922 18 C -0.083 4.083 19 H 0.079 0.921 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.157 4.157 23 C 0.104 3.896 24 H 0.055 0.945 25 O -0.560 6.560 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 -18.964 16.031 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.270 5.270 3 C -0.067 4.067 4 C -0.002 4.002 5 H 0.123 0.877 6 C -0.062 4.062 7 N -0.150 5.150 8 C -0.045 4.045 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.704 3.296 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.050 4.050 18 C -0.102 4.102 19 H 0.097 0.903 20 C -0.143 4.143 21 C -0.165 4.165 22 C -0.195 4.195 23 C 0.044 3.956 24 H 0.073 0.927 25 O -0.365 6.365 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.450 -19.362 13.745 23.749 hybrid contribution 0.061 0.792 2.023 2.174 sum 0.510 -18.570 15.768 24.366 Atomic orbital electron populations 1.22494 0.87792 1.01593 1.01189 1.62001 1.07806 1.13910 1.43259 1.22236 1.00704 0.87508 0.96273 1.18988 0.99611 0.95259 0.86356 0.87736 1.28688 0.92835 0.91198 0.93461 1.80984 1.10526 1.12221 1.11286 1.19643 0.97398 0.88639 0.98794 1.21036 1.36528 0.95060 1.03793 0.90798 1.24988 0.95191 0.97572 0.95365 1.69907 1.46278 1.10917 1.26506 0.86822 0.80751 0.79928 0.82099 1.20073 1.21324 1.18827 1.21821 1.00429 0.91760 0.90969 1.21860 1.00167 0.95083 0.93063 0.90281 1.22282 1.00693 0.94222 0.97065 1.22469 1.01126 0.97823 0.95058 1.23126 1.00330 0.98808 0.97208 1.22535 0.93673 0.89786 0.89597 0.92676 1.86606 1.79818 1.38053 1.32057 0.90768 0.91740 0.95510 0.90401 0.93011 0.95678 0.95014 0.92601 0.90587 0.94284 0.91209 0.90998 0.91644 0.91471 0.91839 0.90592 0.78061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.14 60.06 0.55 0.76 16 2 N -0.55 -7.39 4.27 -242.92 -1.04 -8.43 16 3 C 0.06 0.92 4.32 -3.83 -0.02 0.90 16 4 C 0.02 0.36 2.13 -93.41 -0.20 0.16 16 5 H 0.10 1.84 6.33 -51.93 -0.33 1.51 16 6 C 0.26 5.42 13.67 -20.76 -0.28 5.14 16 7 N -0.47 -10.96 18.54 42.16 0.78 -10.18 16 8 C -0.01 -0.13 3.49 -27.88 -0.10 -0.22 16 9 C -0.53 -14.40 9.15 -34.44 -0.32 -14.71 16 10 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 13 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 17 C 0.08 0.94 3.28 -3.83 -0.01 0.93 16 18 C -0.08 -0.86 2.86 -89.51 -0.26 -1.11 16 19 H 0.08 0.79 6.28 -51.93 -0.33 0.46 16 20 C -0.11 -1.14 6.17 -25.07 -0.15 -1.30 16 21 C -0.13 -1.10 6.91 -24.73 -0.17 -1.27 16 22 C -0.16 -1.22 6.56 -25.01 -0.16 -1.38 16 23 C 0.10 0.88 4.24 -25.56 -0.11 0.78 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 O -0.56 -4.99 11.43 -35.23 -0.40 -5.39 16 26 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 27 H 0.06 0.68 6.21 -51.93 -0.32 0.36 16 28 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 1.17 7.93 -51.93 -0.41 0.76 16 30 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 32 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 35 H 0.04 0.49 7.66 -51.93 -0.40 0.09 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.92 7.77 -51.93 -0.40 0.51 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 42 H 0.37 1.78 9.11 45.56 0.42 2.20 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -32.19 335.14 -7.06 -39.25 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.23 Total: -0.56 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.33 Total: -9.41 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.52 Total: -45.20 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.40 Total: -5.39 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.19 -7.06 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305272909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.605 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds