Wall clock time and date at job start Mon Mar 30 2020 01:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00108 * 2 1 4 4 C 1.53000 * 109.47005 * 293.95445 * 3 2 1 5 5 H 1.08992 * 109.47199 * 55.00342 * 4 3 2 6 6 C 1.47200 * 109.47217 * 294.99815 * 4 3 2 7 7 N 3.66503 * 112.02743 * 284.54264 * 2 1 3 8 8 C 1.53000 * 109.46738 * 175.00262 * 4 3 2 9 9 C 1.50708 * 109.46973 * 184.99920 * 8 4 3 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 8 4 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 8 4 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.46899 * 111.00039 * 123.95854 * 2 1 3 18 18 C 1.52997 * 109.47495 * 66.04444 * 17 2 1 19 19 H 1.09003 * 110.01832 * 305.70199 * 18 17 2 20 20 C 1.54260 * 110.03453 * 67.09132 * 18 17 2 21 21 C 1.54891 * 104.19788 * 142.89595 * 20 18 17 22 22 C 1.54898 * 102.74835 * 322.06242 * 21 20 18 23 23 C 1.53872 * 110.03507 * 184.31305 * 18 17 2 24 24 H 1.09002 * 110.03557 * 121.42439 * 23 18 17 25 25 O 1.42907 * 110.03303 * 359.97438 * 23 18 17 26 26 H 1.08998 * 109.47051 * 60.00256 * 1 2 3 27 27 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47135 * 299.99988 * 1 2 3 29 29 H 1.09004 * 109.46957 * 173.95621 * 3 2 1 30 30 H 1.09001 * 109.46896 * 53.95697 * 3 2 1 31 31 H 1.08994 * 109.48028 * 64.99977 * 8 4 3 32 32 H 1.09000 * 109.47206 * 304.99831 * 8 4 3 33 33 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 34 34 H 1.09000 * 109.47139 * 186.04664 * 17 2 1 35 35 H 1.09007 * 109.46885 * 306.04542 * 17 2 1 36 36 H 1.08997 * 110.48794 * 261.57786 * 20 18 17 37 37 H 1.09001 * 110.48304 * 24.22252 * 20 18 17 38 38 H 1.09004 * 110.75694 * 80.37537 * 21 20 18 39 39 H 1.08995 * 110.76116 * 203.74982 * 21 20 18 40 40 H 1.08991 * 110.48772 * 156.62098 * 22 21 20 41 41 H 1.09004 * 110.48211 * 279.13126 * 22 21 20 42 42 H 0.96700 * 114.00000 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 1 0.5533 2.0058 -1.4690 6 6 2.3156 1.3777 -2.4304 7 7 2.8436 0.8531 -3.2886 8 6 2.0701 3.5223 -1.2688 9 6 1.6032 4.2288 -2.5155 10 1 1.0488 3.6872 -3.2675 11 6 1.8830 5.5668 -2.6955 12 7 1.4752 6.1834 -3.7832 13 14 2.8414 6.5038 -1.3943 14 1 1.8967 7.0890 -0.4092 15 1 3.6197 7.5913 -2.0400 16 1 3.7697 5.5762 -0.6993 17 6 1.9955 -0.7661 1.1375 18 6 1.6315 -2.2427 0.9703 19 1 0.5557 -2.3482 0.8300 20 6 2.3828 -2.8386 -0.2381 21 6 2.7401 -4.2779 0.2089 22 6 3.0941 -4.0931 1.7055 23 6 2.0825 -3.0401 2.2065 24 1 1.2258 -3.5332 2.6658 25 8 2.7101 -2.1684 3.1491 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.0798 1.3443 0.1082 30 1 1.5611 1.9273 0.8310 31 1 3.1570 3.5744 -1.2073 32 1 1.6332 4.0031 -0.3936 33 1 1.6724 7.1247 -3.9099 34 1 3.0797 -0.6612 1.1756 35 1 1.5611 -0.3873 2.0628 36 1 1.7368 -2.8609 -1.1157 37 1 3.2880 -2.2673 -0.4439 38 1 1.8834 -4.9420 0.0937 39 1 3.5988 -4.6533 -0.3476 40 1 2.9672 -5.0309 2.2461 41 1 4.1149 -3.7266 1.8136 42 1 3.0173 -2.6123 3.9514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305272909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:26 Heat of formation + Delta-G solvation = -60.390769 kcal Electronic energy + Delta-G solvation = -20480.813845 eV Core-core repulsion = 17459.210087 eV Total energy + Delta-G solvation = -3021.603758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.33825 -38.94853 -37.08401 -35.82504 -35.36566 -33.71589 -30.97431 -29.03117 -28.44835 -27.50048 -25.05443 -23.24114 -22.48224 -21.67425 -20.36524 -18.90881 -18.39979 -18.11134 -17.02507 -16.41285 -16.05994 -15.75387 -15.60751 -15.20285 -15.01680 -14.69410 -14.55318 -14.32134 -13.97567 -13.85342 -13.35063 -13.20899 -13.09457 -12.77114 -12.75896 -12.54483 -12.32549 -12.09598 -11.97501 -11.90602 -11.81583 -11.63061 -11.50663 -11.44184 -11.33275 -11.11744 -10.72979 -10.66346 -9.13709 -8.24767 -6.30314 1.42001 1.45240 1.55673 2.05790 2.13656 2.41016 2.95952 3.11599 3.32522 3.41667 3.68375 3.78785 4.00326 4.09146 4.29040 4.35217 4.44448 4.51915 4.52868 4.61230 4.65763 4.68567 4.74313 4.83210 4.86779 4.93053 5.00487 5.05051 5.09673 5.15309 5.22490 5.25276 5.33747 5.39107 5.44805 5.51675 5.63394 6.14677 6.25349 6.28000 6.76844 6.91314 7.01419 7.34115 8.92233 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030977 B = 0.004033 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.675044 B = 6941.507780 C = 7308.192826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.560 5.560 3 C 0.071 3.929 4 C 0.026 3.974 5 H 0.114 0.886 6 C 0.264 3.736 7 N -0.514 5.514 8 C -0.003 4.003 9 C -0.531 4.531 10 H 0.029 0.971 11 C 0.004 3.996 12 N -0.954 5.954 13 Si 0.948 3.052 14 H -0.256 1.256 15 H -0.294 1.294 16 H -0.240 1.240 17 C 0.087 3.913 18 C -0.084 4.084 19 H 0.086 0.914 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.150 4.150 23 C 0.107 3.893 24 H 0.073 0.927 25 O -0.578 6.578 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.061 0.939 33 H 0.265 0.735 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 -19.921 19.384 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.284 5.284 3 C -0.058 4.058 4 C 0.004 3.996 5 H 0.131 0.869 6 C -0.052 4.052 7 N -0.192 5.192 8 C -0.042 4.042 9 C -0.569 4.569 10 H 0.047 0.953 11 C -0.193 4.193 12 N -0.594 5.594 13 Si 0.771 3.229 14 H -0.181 1.181 15 H -0.220 1.220 16 H -0.163 1.163 17 C -0.041 4.041 18 C -0.103 4.103 19 H 0.104 0.896 20 C -0.144 4.144 21 C -0.162 4.162 22 C -0.188 4.188 23 C 0.048 3.952 24 H 0.091 0.909 25 O -0.386 6.386 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.549 -20.357 17.131 26.611 hybrid contribution -0.023 1.036 0.892 1.367 sum 0.526 -19.321 18.023 26.428 Atomic orbital electron populations 1.22520 0.86761 1.02587 1.01196 1.61949 1.08855 1.13207 1.44435 1.22094 1.00927 0.88436 0.94352 1.19073 0.99700 0.93495 0.87336 0.86877 1.29356 0.92049 0.90461 0.93311 1.80976 1.11971 1.13637 1.12600 1.19585 0.97378 0.90250 0.96974 1.21381 1.35428 0.95230 1.04831 0.95272 1.26023 0.96495 0.98888 0.97847 1.70086 1.48602 1.11409 1.29322 0.85692 0.79649 0.78366 0.79203 1.18065 1.22027 1.16283 1.21731 0.99384 0.92650 0.90287 1.21887 1.00441 0.94119 0.93841 0.89627 1.22215 0.99352 0.95711 0.97106 1.22465 1.01591 0.96349 0.95803 1.23084 0.99664 0.99591 0.96480 1.22501 0.94421 0.89383 0.88912 0.90872 1.86552 1.80010 1.38928 1.33085 0.91887 0.90389 0.94231 0.90502 0.90753 0.95587 0.92136 0.92621 0.92063 0.94073 0.92625 0.93542 0.90388 0.91625 0.89687 0.91439 0.75968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.14 127.69 1.17 1.54 16 2 N -0.56 -14.30 4.27 -922.47 -3.93 -18.23 16 3 C 0.07 1.96 4.32 86.30 0.37 2.33 16 4 C 0.03 0.92 2.13 -12.60 -0.03 0.89 16 5 H 0.11 3.88 6.33 -2.39 -0.02 3.87 16 6 C 0.26 11.32 13.67 89.44 1.22 12.54 16 7 N -0.51 -24.33 18.54 20.01 0.37 -23.96 16 8 C 0.00 -0.12 3.49 29.85 0.10 -0.02 16 9 C -0.53 -29.32 9.15 25.60 0.23 -29.09 16 10 H 0.03 1.82 7.84 -2.92 -0.02 1.79 16 11 C 0.00 0.24 5.47 84.65 0.46 0.70 16 12 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 13 Si 0.95 42.27 27.47 68.60 1.88 44.15 16 14 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 15 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 17 C 0.09 1.95 3.28 86.30 0.28 2.24 16 18 C -0.08 -1.59 2.86 -10.07 -0.03 -1.61 16 19 H 0.09 1.50 6.28 -2.39 -0.01 1.49 16 20 C -0.11 -2.26 6.17 31.67 0.20 -2.06 16 21 C -0.12 -1.96 6.91 31.89 0.22 -1.74 16 22 C -0.15 -1.96 6.56 31.71 0.21 -1.76 16 23 C 0.11 1.54 4.24 31.35 0.13 1.67 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 O -0.58 -8.79 11.43 -148.98 -1.70 -10.49 16 26 H 0.06 1.52 6.37 -2.39 -0.02 1.50 16 27 H 0.08 1.49 6.21 -2.39 -0.01 1.47 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 2.15 7.93 -2.38 -0.02 2.13 16 30 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 31 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 32 H 0.06 2.25 7.57 -2.39 -0.02 2.24 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.06 1.56 7.69 -2.39 -0.02 1.54 16 35 H 0.04 0.92 7.66 -2.38 -0.02 0.90 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.21 7.77 -2.39 -0.02 1.19 16 38 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 42 H 0.39 2.63 9.11 -74.06 -0.67 1.95 16 Total: -1.00 -71.35 335.14 1.74 -69.61 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.27 Total: 12.70 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 4.55 Total: -14.36 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -3.26 Total: -101.61 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -1.70 Total: -10.49 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.15 kcal Total: -71.35 1.74 -69.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305272909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.219 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds