Wall clock time and date at job start Mon Mar 30 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.52996 * 109.47198 * 270.00278 * 3 2 1 5 5 C 1.53003 * 117.49911 * 243.74366 * 4 3 2 6 6 C 1.52999 * 117.49900 * 175.08274 * 4 3 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 8 8 O 1.21588 * 119.99858 * 179.97438 * 7 2 1 9 9 N 1.34773 * 119.99935 * 359.72710 * 7 2 1 10 10 C 1.46496 * 119.99973 * 180.02562 * 9 7 2 11 11 H 1.09011 * 110.01678 * 325.69447 * 10 9 7 12 12 C 1.53875 * 110.03495 * 87.08950 * 10 9 7 13 13 C 1.54262 * 106.59902 * 119.28974 * 12 10 9 14 14 C 1.54888 * 104.19783 * 23.60503 * 13 12 10 15 15 H 1.09001 * 110.75372 * 80.38140 * 14 13 12 16 16 C 1.50705 * 110.75585 * 203.55901 * 14 13 12 17 17 H 1.07999 * 119.99535 * 118.54871 * 16 14 13 18 18 C 1.37869 * 120.00183 * 298.54917 * 16 14 13 19 19 N 1.31516 * 120.00267 * 179.97438 * 18 16 14 20 20 Si 1.86798 * 120.00262 * 0.02562 * 18 16 14 21 21 H 1.48499 * 109.47485 * 89.99887 * 20 18 16 22 22 H 1.48501 * 109.47214 * 209.99922 * 20 18 16 23 23 H 1.48508 * 109.46881 * 329.99656 * 20 18 16 24 24 C 1.54264 * 110.03308 * 204.30749 * 10 9 7 25 25 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 26 26 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 27 27 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 28 28 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 29 29 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 30 30 H 1.08998 * 115.54932 * 29.41476 * 4 3 2 31 31 H 1.09003 * 117.49601 * 0.02562 * 5 4 3 32 32 H 1.08997 * 117.49681 * 145.02280 * 5 4 3 33 33 H 1.08995 * 117.50027 * 214.97769 * 6 4 3 34 34 H 1.09009 * 117.49878 * 359.97438 * 6 4 3 35 35 H 0.97004 * 120.00018 * 359.97438 * 9 7 2 36 36 H 1.09003 * 110.02782 * 238.56958 * 12 10 9 37 37 H 1.08998 * 110.03192 * 359.97438 * 12 10 9 38 38 H 1.08994 * 110.48912 * 142.28994 * 13 12 10 39 39 H 1.09002 * 110.48116 * 264.93042 * 13 12 10 40 40 H 0.97001 * 120.00507 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.48754 * 335.78193 * 24 10 9 42 42 H 1.09004 * 110.49026 * 98.42319 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.9073 1.7960 -1.9084 6 6 3.1069 3.0765 -1.6578 7 6 2.1389 -1.1673 -0.0005 8 8 3.3548 -1.1672 -0.0010 9 7 1.4650 -2.3344 0.0045 10 6 2.1975 -3.6031 0.0045 11 1 3.1146 -3.5045 -0.5764 12 6 2.5300 -4.0198 1.4480 13 6 1.8383 -5.3781 1.6850 14 6 1.6658 -5.9697 0.2639 15 1 2.5950 -6.4232 -0.0810 16 6 0.5418 -6.9732 0.2360 17 1 -0.3183 -6.8030 -0.3947 18 6 0.6114 -8.1083 1.0153 19 7 -0.3697 -8.9837 0.9913 20 14 2.0987 -8.4022 2.1066 21 1 1.8591 -7.8002 3.4428 22 1 2.3230 -9.8627 2.2549 23 1 3.2965 -7.7776 1.4897 24 6 1.3156 -4.7225 -0.5864 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1383 0.5139 30 1 1.7087 1.3882 -2.1712 31 1 4.6827 1.5372 -1.1874 32 1 4.1205 1.5305 -2.9439 33 1 2.7940 3.6529 -2.5284 34 1 3.3554 3.6608 -0.7717 35 1 0.4950 -2.3344 0.0089 36 1 3.6085 -4.1242 1.5673 37 1 2.1468 -3.2779 2.1485 38 1 2.4685 -6.0261 2.2941 39 1 0.8672 -5.2341 2.1586 40 1 -0.3210 -9.7822 1.5399 41 1 0.2599 -4.4726 -0.4801 42 1 1.5649 -4.8917 -1.6339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331704077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:41 Heat of formation + Delta-G solvation = -6.009949 kcal Electronic energy + Delta-G solvation = -20573.330779 eV Core-core repulsion = 17554.085150 eV Total energy + Delta-G solvation = -3019.245629 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.19741 -37.99755 -37.05257 -35.07580 -33.62565 -32.02480 -28.64875 -28.25293 -27.48430 -25.79146 -23.50470 -22.50705 -21.23897 -20.15098 -19.78224 -19.12897 -17.89096 -16.93726 -16.36386 -15.79218 -15.36772 -15.07213 -14.49061 -14.06520 -13.99241 -13.74921 -13.20216 -12.87917 -12.79874 -12.55364 -12.41100 -12.17923 -11.85269 -11.66312 -11.56502 -11.06031 -10.94256 -10.62822 -10.45402 -10.13620 -10.11030 -9.95607 -9.79740 -9.73638 -9.43958 -9.01082 -8.86873 -8.54167 -8.45334 -6.07083 -4.06115 2.71061 3.30860 3.36529 3.40420 3.42855 3.63504 4.10903 4.43525 4.55436 4.73680 4.80347 4.94417 5.15385 5.22284 5.22590 5.30879 5.39671 5.43542 5.49061 5.49984 5.60118 5.64109 5.77662 5.95083 6.04735 6.14434 6.18897 6.30846 6.44652 6.47453 6.53761 6.60627 6.74194 6.86346 6.95201 7.08162 7.17847 7.53878 7.77183 8.11544 8.52129 8.78256 8.95913 9.56258 11.06115 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.043002 B = 0.003814 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.980059 B = 7339.871759 C = 7549.334086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.636 5.636 3 C 0.165 3.835 4 C -0.169 4.169 5 C -0.168 4.168 6 C -0.180 4.180 7 C 0.703 3.297 8 O -0.589 6.589 9 N -0.734 5.734 10 C 0.155 3.845 11 H 0.082 0.918 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.015 3.985 15 H 0.035 0.965 16 C -0.510 4.510 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.903 5.903 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.264 1.264 24 C -0.109 4.109 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.394 0.606 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 21.829 -2.459 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.374 5.374 3 C 0.042 3.958 4 C -0.189 4.189 5 C -0.205 4.205 6 C -0.218 4.218 7 C 0.405 3.595 8 O -0.467 6.467 9 N -0.389 5.389 10 C 0.050 3.950 11 H 0.101 0.899 12 C -0.169 4.169 13 C -0.168 4.168 14 C -0.004 4.004 15 H 0.053 0.947 16 C -0.547 4.547 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.542 5.542 20 Si 0.712 3.288 21 H -0.205 1.205 22 H -0.223 1.223 23 H -0.189 1.189 24 C -0.148 4.148 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.230 0.770 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.417 21.631 -2.381 22.028 hybrid contribution 0.101 -0.251 0.646 0.701 sum 3.517 21.380 -1.734 21.737 Atomic orbital electron populations 1.21717 0.79992 1.02989 1.01753 1.46997 1.06159 1.05014 1.79223 1.20828 0.97617 0.83476 0.93926 1.22766 0.97067 1.00259 0.98807 1.22983 0.94499 1.00661 1.02396 1.22957 1.05035 0.90598 1.03200 1.15956 0.85436 0.80426 0.77729 1.90885 1.11558 1.86199 1.58086 1.45642 1.09695 1.04699 1.78888 1.21704 0.95504 0.81006 0.96764 0.89945 1.22564 1.00241 0.98132 0.96000 1.22814 0.99382 0.94164 1.00448 1.20070 0.97580 0.92532 0.90245 0.94728 1.20968 1.04348 1.03444 1.25976 0.90863 1.24985 0.95772 0.95721 0.96602 1.69901 1.32115 1.11330 1.40805 0.86895 0.84244 0.76332 0.81351 1.20475 1.22323 1.18901 1.22579 0.98602 0.94441 0.99135 0.92634 0.90983 0.91312 0.90491 0.89703 0.87984 0.88408 0.89180 0.88964 0.88802 0.77010 0.92309 0.92567 0.93618 0.91548 0.92703 0.91520 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.20 59.85 0.61 1.26 16 2 N -0.64 -7.47 2.87 -187.35 -0.54 -8.01 16 3 C 0.17 1.70 5.69 -4.04 -0.02 1.68 16 4 C -0.17 -1.66 6.01 -90.62 -0.54 -2.20 16 5 C -0.17 -1.71 10.18 -26.69 -0.27 -1.99 16 6 C -0.18 -1.44 10.25 -26.69 -0.27 -1.71 16 7 C 0.70 10.99 8.27 -86.91 -0.72 10.27 16 8 O -0.59 -11.33 15.59 5.29 0.08 -11.24 16 9 N -0.73 -11.02 4.85 -57.58 -0.28 -11.30 16 10 C 0.15 2.71 3.23 -66.82 -0.22 2.49 16 11 H 0.08 1.53 7.59 -51.92 -0.39 1.13 16 12 C -0.13 -2.40 6.59 -25.61 -0.17 -2.57 16 13 C -0.13 -2.76 5.08 -25.07 -0.13 -2.89 16 14 C 0.01 0.34 2.29 -89.74 -0.21 0.14 16 15 H 0.03 0.82 7.37 -51.93 -0.38 0.43 16 16 C -0.51 -13.94 9.14 -34.44 -0.31 -14.25 16 17 H 0.07 2.15 8.03 -52.49 -0.42 1.73 16 18 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 19 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 20 Si 0.88 21.84 24.46 -169.99 -4.16 17.68 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.26 -6.29 6.48 56.52 0.37 -5.92 16 24 C -0.11 -2.07 5.96 -25.03 -0.15 -2.22 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 27 H 0.07 0.55 6.37 -51.92 -0.33 0.22 16 28 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 29 H 0.08 1.03 7.15 -51.93 -0.37 0.66 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.09 8.03 -51.93 -0.42 0.67 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 35 H 0.39 5.04 6.09 -40.82 -0.25 4.79 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 38 H 0.05 1.00 4.89 -51.93 -0.25 0.75 16 39 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 1.23 7.64 -51.93 -0.40 0.83 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -32.11 331.33 -8.64 -40.75 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.01 Total: 3.81 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.50 Total: -10.07 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.04 Total: -45.92 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.16 Total: 17.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.11 -8.64 -40.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331704077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.740 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds