Wall clock time and date at job start Mon Mar 30 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.52996 * 109.47198 * 270.00278 * 3 2 1 5 5 C 1.53003 * 117.49911 * 243.74366 * 4 3 2 6 6 C 1.52999 * 117.49900 * 175.08274 * 4 3 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 8 8 O 1.21588 * 119.99858 * 179.97438 * 7 2 1 9 9 N 1.34773 * 119.99935 * 359.72710 * 7 2 1 10 10 C 1.46496 * 119.99973 * 180.02562 * 9 7 2 11 11 H 1.09011 * 110.01678 * 325.69447 * 10 9 7 12 12 C 1.53875 * 110.03495 * 87.08950 * 10 9 7 13 13 C 1.54262 * 106.59902 * 119.28974 * 12 10 9 14 14 C 1.54888 * 104.19783 * 23.60503 * 13 12 10 15 15 H 1.09001 * 110.75372 * 80.38140 * 14 13 12 16 16 C 1.50705 * 110.75585 * 203.55901 * 14 13 12 17 17 H 1.07999 * 119.99535 * 118.54871 * 16 14 13 18 18 C 1.37869 * 120.00183 * 298.54917 * 16 14 13 19 19 N 1.31516 * 120.00267 * 179.97438 * 18 16 14 20 20 Si 1.86798 * 120.00262 * 0.02562 * 18 16 14 21 21 H 1.48499 * 109.47485 * 89.99887 * 20 18 16 22 22 H 1.48501 * 109.47214 * 209.99922 * 20 18 16 23 23 H 1.48508 * 109.46881 * 329.99656 * 20 18 16 24 24 C 1.54264 * 110.03308 * 204.30749 * 10 9 7 25 25 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 26 26 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 27 27 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 28 28 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 29 29 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 30 30 H 1.08998 * 115.54932 * 29.41476 * 4 3 2 31 31 H 1.09003 * 117.49601 * 0.02562 * 5 4 3 32 32 H 1.08997 * 117.49681 * 145.02280 * 5 4 3 33 33 H 1.08995 * 117.50027 * 214.97769 * 6 4 3 34 34 H 1.09009 * 117.49878 * 359.97438 * 6 4 3 35 35 H 0.97004 * 120.00018 * 359.97438 * 9 7 2 36 36 H 1.09003 * 110.02782 * 238.56958 * 12 10 9 37 37 H 1.08998 * 110.03192 * 359.97438 * 12 10 9 38 38 H 1.08994 * 110.48912 * 142.28994 * 13 12 10 39 39 H 1.09002 * 110.48116 * 264.93042 * 13 12 10 40 40 H 0.97001 * 120.00507 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.48754 * 335.78193 * 24 10 9 42 42 H 1.09004 * 110.49026 * 98.42319 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.9073 1.7960 -1.9084 6 6 3.1069 3.0765 -1.6578 7 6 2.1389 -1.1673 -0.0005 8 8 3.3548 -1.1672 -0.0010 9 7 1.4650 -2.3344 0.0045 10 6 2.1975 -3.6031 0.0045 11 1 3.1146 -3.5045 -0.5764 12 6 2.5300 -4.0198 1.4480 13 6 1.8383 -5.3781 1.6850 14 6 1.6658 -5.9697 0.2639 15 1 2.5950 -6.4232 -0.0810 16 6 0.5418 -6.9732 0.2360 17 1 -0.3183 -6.8030 -0.3947 18 6 0.6114 -8.1083 1.0153 19 7 -0.3697 -8.9837 0.9913 20 14 2.0987 -8.4022 2.1066 21 1 1.8591 -7.8002 3.4428 22 1 2.3230 -9.8627 2.2549 23 1 3.2965 -7.7776 1.4897 24 6 1.3156 -4.7225 -0.5864 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1383 0.5139 30 1 1.7087 1.3882 -2.1712 31 1 4.6827 1.5372 -1.1874 32 1 4.1205 1.5305 -2.9439 33 1 2.7940 3.6529 -2.5284 34 1 3.3554 3.6608 -0.7717 35 1 0.4950 -2.3344 0.0089 36 1 3.6085 -4.1242 1.5673 37 1 2.1468 -3.2779 2.1485 38 1 2.4685 -6.0261 2.2941 39 1 0.8672 -5.2341 2.1586 40 1 -0.3210 -9.7822 1.5399 41 1 0.2599 -4.4726 -0.4801 42 1 1.5649 -4.8917 -1.6339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331704077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:41 Heat of formation + Delta-G solvation = -25.908849 kcal Electronic energy + Delta-G solvation = -20574.193660 eV Core-core repulsion = 17554.085150 eV Total energy + Delta-G solvation = -3020.108510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35568 -39.26183 -38.14402 -36.08833 -35.22544 -33.90097 -30.28578 -29.52184 -28.58994 -26.85291 -25.32801 -23.20457 -22.23752 -21.43267 -21.23366 -20.57461 -19.05163 -18.74584 -17.55076 -16.95870 -16.73666 -16.43249 -15.90056 -15.23428 -15.00792 -14.99273 -14.78690 -14.17181 -14.08507 -14.03721 -13.59262 -13.31015 -13.00902 -12.80823 -12.65258 -12.52313 -12.34865 -12.28439 -11.81021 -11.62128 -11.52176 -11.39243 -11.24292 -11.11083 -11.02126 -10.83982 -10.68462 -10.10109 -9.48049 -8.27327 -6.29760 1.34197 1.38337 1.48079 1.69590 2.18240 2.35799 2.86315 3.08699 3.10941 3.81273 3.81833 3.91166 3.99899 4.09833 4.12538 4.29804 4.41210 4.53503 4.61907 4.62193 4.67290 4.73636 4.79608 4.85237 4.89593 4.93016 4.95553 4.98371 5.03863 5.12567 5.23264 5.25784 5.29577 5.40510 5.57960 5.64393 5.71490 5.79737 5.98394 6.33851 6.76548 7.01789 7.36000 7.61680 8.89230 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.043002 B = 0.003814 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.980059 B = 7339.871759 C = 7549.334086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.630 5.630 3 C 0.163 3.837 4 C -0.175 4.175 5 C -0.192 4.192 6 C -0.153 4.153 7 C 0.697 3.303 8 O -0.630 6.630 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.074 0.926 12 C -0.121 4.121 13 C -0.126 4.126 14 C 0.007 3.993 15 H 0.030 0.970 16 C -0.508 4.508 17 H 0.040 0.960 18 C 0.015 3.985 19 N -0.951 5.951 20 Si 0.939 3.061 21 H -0.267 1.267 22 H -0.298 1.298 23 H -0.248 1.248 24 C -0.099 4.099 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.406 0.594 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.264 0.736 41 H 0.070 0.930 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 24.292 -2.028 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.367 5.367 3 C 0.040 3.960 4 C -0.194 4.194 5 C -0.229 4.229 6 C -0.190 4.190 7 C 0.399 3.601 8 O -0.512 6.512 9 N -0.384 5.384 10 C 0.061 3.939 11 H 0.093 0.907 12 C -0.160 4.160 13 C -0.163 4.163 14 C -0.013 4.013 15 H 0.048 0.952 16 C -0.546 4.546 17 H 0.058 0.942 18 C -0.182 4.182 19 N -0.591 5.591 20 Si 0.766 3.234 21 H -0.193 1.193 22 H -0.226 1.226 23 H -0.172 1.172 24 C -0.137 4.137 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.587 24.147 -1.957 24.491 hybrid contribution -0.045 -0.969 0.439 1.065 sum 3.542 23.178 -1.518 23.497 Atomic orbital electron populations 1.21974 0.77577 1.04414 1.03000 1.47083 1.07667 1.04150 1.77768 1.20972 0.97167 0.83459 0.94431 1.22741 0.96431 1.01907 0.98349 1.22975 0.94676 1.03410 1.01854 1.23036 1.02236 0.89617 1.04145 1.16142 0.85053 0.81330 0.77602 1.90860 1.13472 1.86910 1.59915 1.45402 1.10171 1.03887 1.78939 1.21356 0.94983 0.81610 0.95904 0.90745 1.22478 1.00174 0.96616 0.96721 1.22673 0.99296 0.95553 0.98826 1.20047 0.95576 0.93074 0.92557 0.95159 1.21263 1.04470 1.04393 1.24497 0.94208 1.25784 0.98495 0.95644 0.98298 1.70038 1.34439 1.12219 1.42439 0.85967 0.81329 0.76109 0.80006 1.19275 1.22574 1.17243 1.22427 0.99141 0.93237 0.98929 0.91419 0.88440 0.91107 0.87300 0.91954 0.88073 0.90055 0.89488 0.87440 0.87480 0.75594 0.91937 0.91528 0.94045 0.92262 0.92664 0.91155 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 10.20 127.77 1.30 2.26 16 2 N -0.63 -13.38 2.87 -864.92 -2.49 -15.86 16 3 C 0.16 3.01 5.69 86.38 0.49 3.50 16 4 C -0.17 -3.08 6.01 -10.79 -0.06 -3.15 16 5 C -0.19 -3.78 10.18 30.62 0.31 -3.47 16 6 C -0.15 -2.05 10.25 30.62 0.31 -1.73 16 7 C 0.70 20.76 8.27 179.05 1.48 22.24 16 8 O -0.63 -23.88 15.59 -3.99 -0.06 -23.95 16 9 N -0.73 -20.51 4.85 -454.34 -2.20 -22.72 16 10 C 0.17 5.59 3.23 45.72 0.15 5.74 16 11 H 0.07 2.67 7.59 -2.38 -0.02 2.65 16 12 C -0.12 -4.22 6.59 31.32 0.21 -4.01 16 13 C -0.13 -5.13 5.08 31.67 0.16 -4.97 16 14 C 0.01 0.30 2.29 -10.22 -0.02 0.28 16 15 H 0.03 1.40 7.37 -2.39 -0.02 1.38 16 16 C -0.51 -28.14 9.14 25.60 0.23 -27.91 16 17 H 0.04 2.41 8.03 -2.91 -0.02 2.38 16 18 C 0.01 0.84 5.46 84.65 0.46 1.31 16 19 N -0.95 -58.91 13.96 21.44 0.30 -58.61 16 20 Si 0.94 44.80 24.46 68.60 1.68 46.47 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.25 -11.12 6.48 99.48 0.64 -10.47 16 24 C -0.10 -3.64 5.96 31.69 0.19 -3.45 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.83 8.07 -2.39 -0.02 0.81 16 27 H 0.07 0.92 6.37 -2.38 -0.02 0.91 16 28 H 0.11 1.31 8.07 -2.39 -0.02 1.29 16 29 H 0.06 1.46 7.15 -2.39 -0.02 1.44 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 1.85 8.03 -2.39 -0.02 1.83 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.41 9.46 6.09 -92.71 -0.56 8.90 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 2.19 7.92 -2.39 -0.02 2.17 16 38 H 0.04 1.72 4.89 -2.39 -0.01 1.71 16 39 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 40 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.07 2.52 7.64 -2.39 -0.02 2.50 16 42 H 0.07 2.33 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -70.28 331.33 2.81 -67.47 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.37 Total: 20.56 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.21 Total: -13.37 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -4.39 Total: -97.19 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.95 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.68 Total: 46.47 kcal Total: -70.28 2.81 -67.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331704077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.561 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds