Wall clock time and date at job start Mon Mar 30 2020 00:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47052 * 2 1 4 4 C 1.34774 * 120.00489 * 90.00193 * 3 2 1 5 5 O 1.21581 * 120.00169 * 174.85393 * 4 3 2 6 6 N 1.34780 * 119.99692 * 354.84912 * 4 3 2 7 7 C 1.46495 * 119.99984 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.01820 * 326.39403 * 7 6 4 9 9 C 1.54265 * 110.03254 * 87.83724 * 7 6 4 10 10 C 1.54885 * 104.19521 * 95.67235 * 9 7 6 11 11 C 1.54886 * 102.74856 * 37.94583 * 10 9 7 12 12 H 1.09002 * 110.60302 * 80.79466 * 11 10 9 13 13 C 1.50702 * 110.48501 * 203.37622 * 11 10 9 14 14 H 1.08000 * 120.00181 * 114.77659 * 13 11 10 15 15 C 1.37878 * 120.00278 * 294.77170 * 13 11 10 16 16 N 1.31517 * 119.99704 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00197 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47128 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47152 * 120.00258 * 17 15 13 20 20 H 1.48498 * 109.47344 * 240.00125 * 17 15 13 21 21 C 1.53883 * 110.03382 * 205.00204 * 7 6 4 22 22 C 1.46509 * 119.99660 * 269.99814 * 3 2 1 23 23 C 1.52999 * 117.49866 * 13.63138 * 22 3 2 24 24 C 1.53001 * 117.49990 * 304.96691 * 22 3 2 25 25 H 1.09000 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47096 * 300.00468 * 1 2 3 27 27 H 1.08995 * 109.47100 * 59.99936 * 1 2 3 28 28 H 1.09000 * 109.47342 * 240.00068 * 2 1 3 29 29 H 1.09001 * 109.47093 * 119.99600 * 2 1 3 30 30 H 0.97006 * 120.00054 * 0.02562 * 6 4 3 31 31 H 1.08995 * 110.48585 * 214.35217 * 9 7 6 32 32 H 1.09003 * 110.48260 * 336.99426 * 9 7 6 33 33 H 1.08996 * 110.75852 * 279.62773 * 10 9 7 34 34 H 1.09008 * 110.91298 * 156.33163 * 10 9 7 35 35 H 0.97001 * 119.99700 * 179.97438 * 16 15 13 36 36 H 1.08996 * 110.02842 * 0.02562 * 21 7 6 37 37 H 1.08995 * 110.02903 * 121.37912 * 21 7 6 38 38 H 1.09001 * 115.54409 * 159.29380 * 22 3 2 39 39 H 1.08999 * 117.49615 * 359.97438 * 23 22 3 40 40 H 1.08996 * 117.50170 * 145.02279 * 23 22 3 41 41 H 1.08996 * 117.49552 * 214.98102 * 24 22 3 42 42 H 1.09001 * 117.49552 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0167 1.1671 5 8 2.7361 3.1280 1.1692 6 7 1.9210 1.4201 2.3320 7 6 2.1657 2.1105 3.6007 8 1 3.0631 2.7244 3.5244 9 6 0.9521 2.9899 3.9665 10 6 0.1149 2.1034 4.9216 11 6 1.2008 1.3769 5.7534 12 1 1.5673 2.0217 6.5522 13 6 0.6572 0.0917 6.3225 14 1 1.0632 -0.8558 6.0005 15 6 -0.3585 0.1254 7.2543 16 7 -0.8533 1.2792 7.6462 17 14 -1.0327 -1.4677 7.9591 18 1 -0.3119 -2.6188 7.3587 19 1 -0.8411 -1.4777 9.4317 20 1 -2.4809 -1.5730 7.6478 21 6 2.3238 1.0849 4.7370 22 6 2.2625 2.0718 -1.2689 23 6 1.6980 1.4345 -2.5401 24 6 3.2043 1.3991 -2.2695 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5279 0.5333 2.3304 31 1 1.2779 3.8970 4.4753 32 1 0.3776 3.2374 3.0738 33 1 -0.4839 1.3875 4.3586 34 1 -0.5193 2.7146 5.5639 35 1 -1.5681 1.3030 8.3015 36 1 2.2188 0.0736 4.3444 37 1 3.2979 1.2012 5.2120 38 1 2.2785 3.1605 -1.2160 39 1 1.1453 0.5012 -2.4324 40 1 1.3432 2.1037 -3.3238 41 1 3.8397 2.0451 -2.8753 42 1 3.6419 0.4424 -1.9840 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331966946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:45 Heat of formation + Delta-G solvation = -11.984525 kcal Electronic energy + Delta-G solvation = -20964.047095 eV Core-core repulsion = 17944.542389 eV Total energy + Delta-G solvation = -3019.504706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28933 -38.01227 -36.68640 -34.60643 -33.19431 -31.66367 -30.27431 -28.12701 -26.97081 -23.91503 -23.68477 -22.58818 -22.30922 -19.73296 -19.50034 -18.89966 -17.92205 -16.85848 -16.39361 -15.52236 -14.88579 -14.70858 -14.56058 -14.05783 -13.88951 -13.76758 -13.14309 -12.77345 -12.70482 -12.32741 -11.82208 -11.70867 -11.67311 -11.30590 -11.16957 -11.02674 -10.92545 -10.79616 -10.64034 -10.51777 -10.38109 -9.92168 -9.75742 -9.55794 -9.20387 -8.80183 -8.68272 -8.37598 -8.23148 -6.01278 -4.04268 2.69914 3.28025 3.31913 3.36661 3.39200 3.82902 4.15530 4.42993 4.59220 4.75851 4.77600 4.80664 5.14096 5.21871 5.30882 5.40897 5.54424 5.58269 5.68004 5.70422 5.72306 5.85610 5.87659 5.89079 6.12717 6.36606 6.39118 6.48478 6.67768 6.69286 6.79199 6.95741 6.99464 7.12715 7.30040 7.40795 7.71433 7.87336 8.02770 8.22234 8.43525 8.86732 8.98565 9.59725 11.08198 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029199 B = 0.004501 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.704073 B = 6219.055363 C = 6731.184101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.103 3.897 3 N -0.607 5.607 4 C 0.707 3.293 5 O -0.593 6.593 6 N -0.727 5.727 7 C 0.156 3.844 8 H 0.076 0.924 9 C -0.136 4.136 10 C -0.098 4.098 11 C 0.047 3.953 12 H 0.033 0.967 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.122 4.122 22 C 0.109 3.891 23 C -0.192 4.192 24 C -0.198 4.198 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.395 0.605 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.259 0.741 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 -2.255 -17.401 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.020 4.020 3 N -0.343 5.343 4 C 0.409 3.591 5 O -0.471 6.471 6 N -0.383 5.383 7 C 0.052 3.948 8 H 0.094 0.906 9 C -0.175 4.175 10 C -0.136 4.136 11 C 0.029 3.971 12 H 0.051 0.949 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.716 3.284 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.160 4.160 22 C 0.003 3.997 23 C -0.230 4.230 24 C -0.237 4.237 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.231 0.769 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.942 -1.362 -17.206 17.705 hybrid contribution -0.732 -1.407 0.355 1.626 sum 3.210 -2.769 -16.851 17.376 Atomic orbital electron populations 1.22297 0.95523 1.02464 1.03202 1.21494 0.94826 0.82732 1.02994 1.46603 1.69983 1.13757 1.03923 1.15876 0.78930 0.84056 0.80243 1.90876 1.50608 1.19474 1.86165 1.45639 1.66790 1.21126 1.04700 1.21661 0.98122 0.93977 0.81058 0.90630 1.22848 0.96908 0.98349 0.99378 1.22435 0.98234 0.97025 0.95953 1.19472 0.89845 0.95814 0.92001 0.94852 1.21206 1.18437 0.92205 1.23292 0.92713 1.24980 0.96705 0.95858 0.96371 1.69973 1.26845 1.24011 1.31794 0.86612 0.78781 0.84077 0.78949 1.19866 1.21093 1.21136 1.22612 1.00547 0.97196 0.95680 1.21349 1.02532 0.96560 0.79246 1.23438 0.96691 1.03525 0.99392 1.23412 0.92886 1.03429 1.03992 0.91399 0.91672 0.92083 0.90365 0.90415 0.76908 0.92070 0.93200 0.93647 0.91547 0.93145 0.92200 0.92775 0.84966 0.88253 0.88094 0.88251 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 10.01 37.16 0.37 -1.35 16 2 C 0.10 1.04 5.03 -4.04 -0.02 1.02 16 3 N -0.61 -7.97 2.82 -171.79 -0.48 -8.45 16 4 C 0.71 12.01 8.26 -86.92 -0.72 11.29 16 5 O -0.59 -12.18 15.69 5.29 0.08 -12.10 16 6 N -0.73 -12.02 4.87 -57.58 -0.28 -12.30 16 7 C 0.16 2.92 3.25 -66.81 -0.22 2.70 16 8 H 0.08 1.46 7.56 -51.93 -0.39 1.07 16 9 C -0.14 -2.71 6.54 -25.08 -0.16 -2.87 16 10 C -0.10 -2.25 5.75 -24.74 -0.14 -2.39 16 11 C 0.05 1.14 2.72 -90.12 -0.25 0.89 16 12 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.51 -13.59 8.46 -34.44 -0.29 -13.88 16 14 H 0.05 1.42 7.54 -52.49 -0.40 1.03 16 15 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 16 N -0.89 -25.15 12.29 55.43 0.68 -24.47 16 17 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 C -0.12 -2.43 6.13 -25.61 -0.16 -2.59 16 22 C 0.11 1.26 6.25 -67.93 -0.42 0.84 16 23 C -0.19 -1.62 9.51 -26.69 -0.25 -1.87 16 24 C -0.20 -1.81 10.02 -26.69 -0.27 -2.08 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.78 8.06 -51.92 -0.42 0.36 16 27 H 0.06 0.57 7.20 -51.93 -0.37 0.20 16 28 H 0.08 0.64 6.25 -51.93 -0.32 0.32 16 29 H 0.08 0.78 6.59 -51.93 -0.34 0.44 16 30 H 0.40 5.88 6.06 -40.82 -0.25 5.64 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.98 8.04 -51.93 -0.42 0.57 16 33 H 0.04 1.05 8.05 -51.93 -0.42 0.64 16 34 H 0.07 1.67 7.55 -51.92 -0.39 1.28 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.06 1.15 7.13 -51.93 -0.37 0.78 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.13 1.71 7.62 -51.93 -0.40 1.32 16 39 H 0.10 0.77 5.84 -51.93 -0.30 0.47 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.85 7.83 -51.93 -0.41 0.44 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -30.27 332.31 -9.51 -39.78 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.87 Total: 5.40 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.62 Total: -8.68 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.08 Total: -45.22 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.10 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.27 -9.51 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331966946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.797 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds