Wall clock time and date at job start Mon Mar 30 2020 00:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47052 * 2 1 4 4 C 1.34774 * 120.00489 * 90.00193 * 3 2 1 5 5 O 1.21581 * 120.00169 * 174.85393 * 4 3 2 6 6 N 1.34780 * 119.99692 * 354.84912 * 4 3 2 7 7 C 1.46495 * 119.99984 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.01820 * 326.39403 * 7 6 4 9 9 C 1.54265 * 110.03254 * 87.83724 * 7 6 4 10 10 C 1.54885 * 104.19521 * 95.67235 * 9 7 6 11 11 C 1.54886 * 102.74856 * 37.94583 * 10 9 7 12 12 H 1.09002 * 110.60302 * 80.79466 * 11 10 9 13 13 C 1.50702 * 110.48501 * 203.37622 * 11 10 9 14 14 H 1.08000 * 120.00181 * 114.77659 * 13 11 10 15 15 C 1.37878 * 120.00278 * 294.77170 * 13 11 10 16 16 N 1.31517 * 119.99704 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00197 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47128 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47152 * 120.00258 * 17 15 13 20 20 H 1.48498 * 109.47344 * 240.00125 * 17 15 13 21 21 C 1.53883 * 110.03382 * 205.00204 * 7 6 4 22 22 C 1.46509 * 119.99660 * 269.99814 * 3 2 1 23 23 C 1.52999 * 117.49866 * 13.63138 * 22 3 2 24 24 C 1.53001 * 117.49990 * 304.96691 * 22 3 2 25 25 H 1.09000 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47096 * 300.00468 * 1 2 3 27 27 H 1.08995 * 109.47100 * 59.99936 * 1 2 3 28 28 H 1.09000 * 109.47342 * 240.00068 * 2 1 3 29 29 H 1.09001 * 109.47093 * 119.99600 * 2 1 3 30 30 H 0.97006 * 120.00054 * 0.02562 * 6 4 3 31 31 H 1.08995 * 110.48585 * 214.35217 * 9 7 6 32 32 H 1.09003 * 110.48260 * 336.99426 * 9 7 6 33 33 H 1.08996 * 110.75852 * 279.62773 * 10 9 7 34 34 H 1.09008 * 110.91298 * 156.33163 * 10 9 7 35 35 H 0.97001 * 119.99700 * 179.97438 * 16 15 13 36 36 H 1.08996 * 110.02842 * 0.02562 * 21 7 6 37 37 H 1.08995 * 110.02903 * 121.37912 * 21 7 6 38 38 H 1.09001 * 115.54409 * 159.29380 * 22 3 2 39 39 H 1.08999 * 117.49615 * 359.97438 * 23 22 3 40 40 H 1.08996 * 117.50170 * 145.02279 * 23 22 3 41 41 H 1.08996 * 117.49552 * 214.98102 * 24 22 3 42 42 H 1.09001 * 117.49552 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0167 1.1671 5 8 2.7361 3.1280 1.1692 6 7 1.9210 1.4201 2.3320 7 6 2.1657 2.1105 3.6007 8 1 3.0631 2.7244 3.5244 9 6 0.9521 2.9899 3.9665 10 6 0.1149 2.1034 4.9216 11 6 1.2008 1.3769 5.7534 12 1 1.5673 2.0217 6.5522 13 6 0.6572 0.0917 6.3225 14 1 1.0632 -0.8558 6.0005 15 6 -0.3585 0.1254 7.2543 16 7 -0.8533 1.2792 7.6462 17 14 -1.0327 -1.4677 7.9591 18 1 -0.3119 -2.6188 7.3587 19 1 -0.8411 -1.4777 9.4317 20 1 -2.4809 -1.5730 7.6478 21 6 2.3238 1.0849 4.7370 22 6 2.2625 2.0718 -1.2689 23 6 1.6980 1.4345 -2.5401 24 6 3.2043 1.3991 -2.2695 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5279 0.5333 2.3304 31 1 1.2779 3.8970 4.4753 32 1 0.3776 3.2374 3.0738 33 1 -0.4839 1.3875 4.3586 34 1 -0.5193 2.7146 5.5639 35 1 -1.5681 1.3030 8.3015 36 1 2.2188 0.0736 4.3444 37 1 3.2979 1.2012 5.2120 38 1 2.2785 3.1605 -1.2160 39 1 1.1453 0.5012 -2.4324 40 1 1.3432 2.1037 -3.3238 41 1 3.8397 2.0451 -2.8753 42 1 3.6419 0.4424 -1.9840 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331966946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:45 Heat of formation + Delta-G solvation = -28.970894 kcal Electronic energy + Delta-G solvation = -20964.783679 eV Core-core repulsion = 17944.542389 eV Total energy + Delta-G solvation = -3020.241290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50199 -39.31709 -38.06728 -35.72439 -34.84967 -33.32761 -31.22386 -29.94266 -28.66305 -25.82039 -24.52649 -23.54620 -23.20707 -21.32500 -20.99959 -20.28048 -19.09227 -18.51193 -17.77930 -16.87883 -16.54281 -16.01145 -15.95332 -15.46230 -15.21087 -14.70081 -14.54024 -14.04624 -13.96294 -13.64156 -13.50883 -12.95054 -12.78923 -12.65823 -12.48744 -12.34715 -12.32106 -12.21839 -12.05672 -11.91666 -11.64454 -11.44571 -11.42595 -11.14629 -11.05627 -10.78578 -10.43947 -10.06378 -9.30013 -8.08160 -6.17683 1.42889 1.45456 1.55769 1.59888 2.09183 2.46421 2.95869 3.02750 3.23312 3.78517 3.94366 3.97086 4.03842 4.05739 4.08402 4.23037 4.34830 4.47648 4.69433 4.73904 4.76056 4.77022 4.87963 4.94880 4.98859 5.01809 5.07785 5.11919 5.19108 5.23158 5.26596 5.35809 5.44536 5.57756 5.68390 5.75404 5.92291 5.98504 6.03088 6.40163 6.93202 6.99416 7.49910 7.57933 9.01045 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029199 B = 0.004501 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.704073 B = 6219.055363 C = 6731.184101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.599 5.599 4 C 0.702 3.298 5 O -0.635 6.635 6 N -0.722 5.722 7 C 0.168 3.832 8 H 0.073 0.927 9 C -0.125 4.125 10 C -0.086 4.086 11 C 0.039 3.961 12 H 0.001 0.999 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.952 3.048 18 H -0.262 1.262 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.109 4.109 22 C 0.069 3.931 23 C -0.165 4.165 24 C -0.186 4.186 25 H 0.088 0.912 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.404 0.596 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.258 0.742 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 -4.396 -19.442 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.404 3.596 5 O -0.517 6.517 6 N -0.378 5.378 7 C 0.063 3.937 8 H 0.091 0.909 9 C -0.164 4.164 10 C -0.124 4.124 11 C 0.020 3.980 12 H 0.020 0.980 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.779 3.221 18 H -0.186 1.186 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.147 4.147 22 C -0.036 4.036 23 C -0.203 4.203 24 C -0.225 4.225 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.242 0.758 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.139 -3.550 -19.295 20.051 hybrid contribution -0.791 -0.720 0.946 1.428 sum 3.348 -4.270 -18.349 19.135 Atomic orbital electron populations 1.22257 0.95121 1.03469 1.02149 1.21741 0.95084 0.81102 1.04456 1.46627 1.68922 1.14686 1.03163 1.16051 0.78732 0.83709 0.81139 1.90841 1.52519 1.21403 1.86898 1.45410 1.66966 1.21367 1.04039 1.21339 0.97163 0.93433 0.81778 0.90916 1.22731 0.96990 0.98104 0.98580 1.22192 0.97720 0.96744 0.95750 1.19446 0.91534 0.94683 0.92294 0.98042 1.21578 1.18319 0.93138 1.23256 0.92218 1.25768 0.97194 0.98874 0.96931 1.70112 1.27425 1.26093 1.32465 0.85590 0.78039 0.80561 0.77957 1.18621 1.21159 1.20965 1.22423 0.99359 0.97991 0.94918 1.21465 1.06544 0.95897 0.79696 1.23526 0.96217 1.03608 0.96936 1.23468 0.93594 1.03247 1.02210 0.89344 0.94268 0.91578 0.87612 0.90247 0.75828 0.92052 0.93014 0.94280 0.94561 0.93279 0.91149 0.91757 0.87267 0.86952 0.86603 0.87338 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.01 71.98 0.72 -2.22 16 2 C 0.10 1.72 5.03 86.38 0.43 2.16 16 3 N -0.60 -14.90 2.82 -815.69 -2.30 -17.20 16 4 C 0.70 23.50 8.26 179.05 1.48 24.98 16 5 O -0.63 -26.34 15.69 -3.97 -0.06 -26.40 16 6 N -0.72 -23.29 4.87 -454.36 -2.21 -25.50 16 7 C 0.17 6.24 3.25 45.72 0.15 6.39 16 8 H 0.07 2.79 7.56 -2.39 -0.02 2.78 16 9 C -0.13 -5.05 6.54 31.67 0.21 -4.84 16 10 C -0.09 -4.02 5.75 31.88 0.18 -3.84 16 11 C 0.04 1.91 2.72 -10.47 -0.03 1.88 16 12 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 13 C -0.52 -27.79 8.46 25.60 0.22 -27.57 16 14 H 0.06 3.04 7.54 -2.91 -0.02 3.02 16 15 C 0.01 0.59 5.35 84.65 0.45 1.04 16 16 N -0.92 -53.29 12.29 21.45 0.26 -53.03 16 17 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 C -0.11 -4.26 6.13 31.32 0.19 -4.07 16 22 C 0.07 1.51 6.25 44.99 0.28 1.79 16 23 C -0.17 -2.25 9.51 30.62 0.29 -1.96 16 24 C -0.19 -2.90 10.02 30.62 0.31 -2.59 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 0.88 8.06 -2.38 -0.02 0.86 16 27 H 0.07 1.06 7.20 -2.39 -0.02 1.04 16 28 H 0.11 1.31 6.25 -2.39 -0.01 1.30 16 29 H 0.08 1.39 6.59 -2.39 -0.02 1.37 16 30 H 0.40 11.50 6.06 -92.70 -0.56 10.93 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.05 2.06 8.04 -2.39 -0.02 2.04 16 33 H 0.04 1.84 8.05 -2.39 -0.02 1.82 16 34 H 0.04 1.89 7.55 -2.38 -0.02 1.87 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.07 2.60 7.13 -2.39 -0.02 2.59 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.11 2.87 7.62 -2.39 -0.02 2.85 16 39 H 0.11 1.27 5.84 -2.39 -0.01 1.25 16 40 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.10 1.47 7.83 -2.39 -0.02 1.45 16 Total: -1.00 -66.28 332.31 3.04 -63.25 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.44 Total: 23.11 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 4.89 Total: -8.84 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -4.25 Total: -95.74 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.06 Total: -26.40 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -66.28 3.04 -63.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331966946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.276 kcal (2) G-P(sol) polarization free energy of solvation -66.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds