Wall clock time and date at job start Mon Mar 30 2020 01:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48042 * 111.00277 * 2 1 4 4 C 1.54378 * 107.19977 * 214.59114 * 3 2 1 5 5 C 1.52922 * 104.66931 * 2.13327 * 4 3 2 6 6 C 1.53476 * 112.16899 * 258.62426 * 5 4 3 7 7 C 1.54628 * 102.74171 * 272.18597 * 6 5 4 8 8 N 1.47151 * 107.34338 * 339.35307 * 7 6 5 9 9 C 1.34782 * 125.59511 * 179.10821 * 8 7 6 10 10 O 1.21280 * 119.99623 * 179.97438 * 9 8 7 11 11 C 1.50690 * 120.00159 * 359.97189 * 9 8 7 12 12 C 1.53006 * 109.47352 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47274 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00202 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00055 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00126 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47062 * 59.99983 * 17 15 13 19 19 H 1.48502 * 109.46791 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46855 * 299.99451 * 17 15 13 21 21 C 1.47755 * 108.80648 * 359.08518 * 8 7 6 22 22 C 1.49142 * 111.18812 * 242.35565 * 2 1 3 23 23 H 1.09003 * 109.47616 * 59.86947 * 1 2 3 24 24 H 1.08998 * 109.47496 * 179.87539 * 1 2 3 25 25 H 1.09006 * 109.46804 * 299.87362 * 1 2 3 26 26 H 1.09002 * 109.92298 * 95.14248 * 3 2 1 27 27 H 1.09006 * 109.92218 * 334.03114 * 3 2 1 28 28 H 1.08995 * 110.39806 * 120.93069 * 4 3 2 29 29 H 1.09004 * 110.39568 * 243.34043 * 4 3 2 30 30 H 1.08999 * 110.75586 * 30.49994 * 6 5 4 31 31 H 1.09000 * 110.75268 * 153.69225 * 6 5 4 32 32 H 1.09001 * 109.86816 * 98.79127 * 7 6 5 33 33 H 1.09005 * 109.86908 * 219.77247 * 7 6 5 34 34 H 1.09001 * 109.47509 * 300.00061 * 11 9 8 35 35 H 1.09005 * 109.47447 * 60.00141 * 11 9 8 36 36 H 1.09001 * 109.46796 * 300.00415 * 12 11 9 37 37 H 1.08996 * 109.46666 * 60.00242 * 12 11 9 38 38 H 0.97003 * 120.00047 * 180.02562 * 16 15 13 39 39 H 1.09003 * 110.39745 * 263.53940 * 21 8 7 40 40 H 1.09000 * 110.39957 * 141.13641 * 21 8 7 41 41 H 1.09003 * 110.54418 * 39.38655 * 22 2 1 42 42 H 1.09004 * 110.87939 * 276.33396 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9995 1.3821 0.0000 4 6 3.2965 1.3731 -0.8372 5 6 3.4225 -0.0653 -1.3408 6 6 4.4396 -0.8768 -0.5269 7 6 5.7712 -0.5849 -1.2568 8 7 5.4359 -0.1241 -2.6135 9 6 6.3233 0.2472 -3.5576 10 8 5.9332 0.6111 -4.6467 11 6 7.8000 0.2103 -3.2598 12 6 8.5803 0.6777 -4.4901 13 6 10.0571 0.6402 -4.1926 14 1 10.4045 0.3158 -3.2228 15 6 10.9648 1.0209 -5.1580 16 7 10.5417 1.4164 -6.3389 17 14 12.7954 0.9751 -4.7889 18 1 13.1967 -0.4131 -4.4467 19 1 13.5525 1.4299 -5.9827 20 1 13.0920 1.8728 -3.6438 21 6 3.9668 -0.1360 -2.7711 22 6 2.0080 -0.6452 -1.2319 23 1 -0.3634 0.5159 -0.8888 24 1 -0.3634 -1.0276 -0.0022 25 1 -0.3633 0.5119 0.8912 26 1 2.2184 1.6959 1.0207 27 1 1.2725 2.0590 -0.4488 28 1 3.2117 2.0633 -1.6765 29 1 4.1524 1.6339 -0.2146 30 1 4.4788 -0.5246 0.5039 31 1 4.2019 -1.9400 -0.5616 32 1 6.3214 0.1927 -0.7268 33 1 6.3717 -1.4931 -1.3095 34 1 8.0179 0.8697 -2.4197 35 1 8.0945 -0.8086 -3.0078 36 1 8.3624 0.0186 -5.3305 37 1 8.2857 1.6965 -4.7416 38 1 11.1804 1.6840 -7.0182 39 1 3.6441 -1.0577 -3.2552 40 1 3.6393 0.7306 -3.3454 41 1 1.4107 -0.3692 -2.1009 42 1 2.0436 -1.7288 -1.1190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334500604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:18 Heat of formation + Delta-G solvation = -37.949278 kcal Electronic energy + Delta-G solvation = -20498.357322 eV Core-core repulsion = 17477.726700 eV Total energy + Delta-G solvation = -3020.630622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62860 -38.68150 -36.45170 -33.44743 -32.55021 -30.91929 -30.11016 -29.42064 -27.12275 -25.61166 -24.20419 -22.96916 -21.49560 -21.19629 -19.49090 -18.58187 -16.93399 -16.00493 -15.93272 -15.77131 -15.65833 -14.63173 -14.43818 -14.34242 -14.26343 -13.71807 -13.36389 -13.09713 -12.73861 -12.58562 -12.24447 -12.13932 -12.01084 -11.79014 -11.69799 -11.45914 -11.12771 -11.03062 -10.90067 -10.74868 -10.67296 -10.58978 -9.91962 -9.63058 -9.16260 -8.99788 -8.76031 -8.36212 -8.28532 -5.94087 -3.98529 3.26183 3.29747 3.35736 3.40358 3.42454 3.64966 4.22872 4.32406 4.35477 4.49216 4.75618 4.88238 4.98044 5.05145 5.08766 5.18175 5.29893 5.37776 5.40595 5.48061 5.50413 5.52858 5.57110 5.64658 5.72960 5.80102 5.81881 5.89374 6.00976 6.05775 6.26259 6.27954 6.50069 6.56730 6.68285 6.92225 7.76191 7.88677 7.89617 8.09475 8.40683 8.77770 9.09808 9.64758 11.16889 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049522 B = 0.003374 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.275077 B = 8297.037380 C = 8478.834725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.036 3.964 4 C -0.115 4.115 5 C -0.077 4.077 6 C -0.108 4.108 7 C 0.102 3.898 8 N -0.630 5.630 9 C 0.526 3.474 10 O -0.535 6.535 11 C -0.124 4.124 12 C 0.037 3.963 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.120 3.880 22 C 0.051 3.949 23 H 0.028 0.972 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 -3.949 15.423 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.092 4.092 4 C -0.153 4.153 5 C -0.078 4.078 6 C -0.145 4.145 7 C -0.021 4.021 8 N -0.367 5.367 9 C 0.317 3.683 10 O -0.410 6.410 11 C -0.164 4.164 12 C 0.000 4.000 13 C -0.565 4.565 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.003 4.003 22 C -0.077 4.077 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.860 -3.928 15.045 24.443 hybrid contribution 0.653 0.425 -0.511 0.931 sum -18.208 -3.503 14.533 23.559 Atomic orbital electron populations 1.22517 0.87882 1.02156 1.00742 1.64838 1.07946 1.14987 1.36778 1.22984 0.95884 0.89646 1.00701 1.22255 0.97795 0.95526 0.99769 1.21449 0.94949 0.95963 0.95470 1.22418 0.92740 1.00231 0.99160 1.22069 0.97348 0.99777 0.82937 1.48812 1.05883 1.68004 1.13984 1.21320 0.89011 0.75219 0.82758 1.90671 1.80718 1.46577 1.23050 1.21844 0.88265 1.02561 1.03691 1.18903 0.92975 0.97432 0.90722 1.21183 0.91372 1.44874 0.99101 0.92659 1.25028 0.98948 0.95324 0.95084 1.69994 1.34377 1.44273 1.04243 0.86647 0.85230 0.78383 0.77638 1.20238 1.21288 1.20250 1.21885 0.81438 1.02019 0.94987 1.23032 0.93493 0.99885 0.91284 0.95391 0.91252 0.91341 0.90261 0.93729 0.90930 0.90336 0.89659 0.90434 0.91408 0.91293 0.90369 0.90342 0.95856 0.95869 0.92901 0.91786 0.90667 0.93222 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.40 60.06 0.56 0.67 16 2 N -0.52 -4.48 5.56 -238.89 -1.33 -5.81 16 3 C 0.04 0.30 6.73 -2.47 -0.02 0.28 16 4 C -0.12 -1.10 6.08 -26.05 -0.16 -1.26 16 5 C -0.08 -0.75 0.69 -154.06 -0.11 -0.86 16 6 C -0.11 -0.98 5.86 -25.63 -0.15 -1.13 16 7 C 0.10 1.18 6.47 -2.83 -0.02 1.16 16 8 N -0.63 -9.68 3.34 -171.02 -0.57 -10.25 16 9 C 0.53 10.73 7.85 -10.99 -0.09 10.65 16 10 O -0.53 -13.19 16.26 5.56 0.09 -13.10 16 11 C -0.12 -2.62 4.83 -27.88 -0.13 -2.75 16 12 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 13 C -0.53 -15.18 9.11 -34.44 -0.31 -15.49 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.77 13.29 55.43 0.74 -27.04 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.12 1.55 5.91 -3.25 -0.02 1.53 16 22 C 0.05 0.44 5.57 -2.44 -0.01 0.43 16 23 H 0.03 0.19 8.01 -51.93 -0.42 -0.22 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.36 7.73 -51.93 -0.40 -0.04 16 28 H 0.07 0.76 7.61 -51.93 -0.40 0.36 16 29 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 30 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 31 H 0.08 0.65 7.81 -51.93 -0.41 0.24 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 40 H 0.07 1.07 7.61 -51.93 -0.40 0.68 16 41 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 42 H 0.09 0.70 7.79 -51.93 -0.40 0.29 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -34.03 335.04 -9.12 -43.15 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -7.41 Total: -4.59 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.67 Total: -4.26 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -1.16 Total: -43.09 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.03 -9.12 -43.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334500604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.205 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds