Wall clock time and date at job start Mon Mar 30 2020 01:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48042 * 111.00277 * 2 1 4 4 C 1.54378 * 107.19977 * 214.59114 * 3 2 1 5 5 C 1.52922 * 104.66931 * 2.13327 * 4 3 2 6 6 C 1.53476 * 112.16899 * 258.62426 * 5 4 3 7 7 C 1.54628 * 102.74171 * 272.18597 * 6 5 4 8 8 N 1.47151 * 107.34338 * 339.35307 * 7 6 5 9 9 C 1.34782 * 125.59511 * 179.10821 * 8 7 6 10 10 O 1.21280 * 119.99623 * 179.97438 * 9 8 7 11 11 C 1.50690 * 120.00159 * 359.97189 * 9 8 7 12 12 C 1.53006 * 109.47352 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47274 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00202 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00055 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00126 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47062 * 59.99983 * 17 15 13 19 19 H 1.48502 * 109.46791 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46855 * 299.99451 * 17 15 13 21 21 C 1.47755 * 108.80648 * 359.08518 * 8 7 6 22 22 C 1.49142 * 111.18812 * 242.35565 * 2 1 3 23 23 H 1.09003 * 109.47616 * 59.86947 * 1 2 3 24 24 H 1.08998 * 109.47496 * 179.87539 * 1 2 3 25 25 H 1.09006 * 109.46804 * 299.87362 * 1 2 3 26 26 H 1.09002 * 109.92298 * 95.14248 * 3 2 1 27 27 H 1.09006 * 109.92218 * 334.03114 * 3 2 1 28 28 H 1.08995 * 110.39806 * 120.93069 * 4 3 2 29 29 H 1.09004 * 110.39568 * 243.34043 * 4 3 2 30 30 H 1.08999 * 110.75586 * 30.49994 * 6 5 4 31 31 H 1.09000 * 110.75268 * 153.69225 * 6 5 4 32 32 H 1.09001 * 109.86816 * 98.79127 * 7 6 5 33 33 H 1.09005 * 109.86908 * 219.77247 * 7 6 5 34 34 H 1.09001 * 109.47509 * 300.00061 * 11 9 8 35 35 H 1.09005 * 109.47447 * 60.00141 * 11 9 8 36 36 H 1.09001 * 109.46796 * 300.00415 * 12 11 9 37 37 H 1.08996 * 109.46666 * 60.00242 * 12 11 9 38 38 H 0.97003 * 120.00047 * 180.02562 * 16 15 13 39 39 H 1.09003 * 110.39745 * 263.53940 * 21 8 7 40 40 H 1.09000 * 110.39957 * 141.13641 * 21 8 7 41 41 H 1.09003 * 110.54418 * 39.38655 * 22 2 1 42 42 H 1.09004 * 110.87939 * 276.33396 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9995 1.3821 0.0000 4 6 3.2965 1.3731 -0.8372 5 6 3.4225 -0.0653 -1.3408 6 6 4.4396 -0.8768 -0.5269 7 6 5.7712 -0.5849 -1.2568 8 7 5.4359 -0.1241 -2.6135 9 6 6.3233 0.2472 -3.5576 10 8 5.9332 0.6111 -4.6467 11 6 7.8000 0.2103 -3.2598 12 6 8.5803 0.6777 -4.4901 13 6 10.0571 0.6402 -4.1926 14 1 10.4045 0.3158 -3.2228 15 6 10.9648 1.0209 -5.1580 16 7 10.5417 1.4164 -6.3389 17 14 12.7954 0.9751 -4.7889 18 1 13.1967 -0.4131 -4.4467 19 1 13.5525 1.4299 -5.9827 20 1 13.0920 1.8728 -3.6438 21 6 3.9668 -0.1360 -2.7711 22 6 2.0080 -0.6452 -1.2319 23 1 -0.3634 0.5159 -0.8888 24 1 -0.3634 -1.0276 -0.0022 25 1 -0.3633 0.5119 0.8912 26 1 2.2184 1.6959 1.0207 27 1 1.2725 2.0590 -0.4488 28 1 3.2117 2.0633 -1.6765 29 1 4.1524 1.6339 -0.2146 30 1 4.4788 -0.5246 0.5039 31 1 4.2019 -1.9400 -0.5616 32 1 6.3214 0.1927 -0.7268 33 1 6.3717 -1.4931 -1.3095 34 1 8.0179 0.8697 -2.4197 35 1 8.0945 -0.8086 -3.0078 36 1 8.3624 0.0186 -5.3305 37 1 8.2857 1.6965 -4.7416 38 1 11.1804 1.6840 -7.0182 39 1 3.6441 -1.0577 -3.2552 40 1 3.6393 0.7306 -3.3454 41 1 1.4107 -0.3692 -2.1009 42 1 2.0436 -1.7288 -1.1190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334500604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:18 Heat of formation + Delta-G solvation = -61.809705 kcal Electronic energy + Delta-G solvation = -20499.391987 eV Core-core repulsion = 17477.726700 eV Total energy + Delta-G solvation = -3021.665288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62949 -40.01710 -37.53199 -35.59148 -33.68760 -32.78416 -30.97895 -30.32724 -28.39851 -27.06888 -25.31003 -24.02459 -23.10766 -22.10159 -20.42520 -19.95137 -18.78762 -17.62336 -17.15293 -16.71137 -16.53226 -16.41482 -15.98284 -15.58220 -15.02931 -14.79715 -14.31948 -14.14810 -14.08266 -13.88042 -13.67474 -13.53812 -13.18294 -12.90901 -12.78492 -12.58999 -12.51874 -12.41407 -12.14409 -11.95006 -11.88885 -11.63310 -11.51139 -11.44273 -11.33045 -10.76271 -10.56778 -9.63889 -9.40499 -8.18538 -6.33228 1.41721 1.46758 1.54465 1.65868 2.00552 2.43161 2.96091 3.14115 3.43687 3.50742 3.56161 3.95308 3.97236 4.19623 4.22883 4.29618 4.43737 4.45508 4.49944 4.52912 4.61242 4.67352 4.68049 4.75139 4.75785 4.91244 4.97441 4.99659 5.04107 5.06259 5.14345 5.24129 5.28118 5.40682 5.49256 5.60250 5.83339 5.84623 6.05798 6.16065 6.49232 6.84844 7.22138 7.37153 8.94150 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049522 B = 0.003374 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.275077 B = 8297.037380 C = 8478.834725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.527 5.527 3 C 0.040 3.960 4 C -0.117 4.117 5 C -0.069 4.069 6 C -0.095 4.095 7 C 0.091 3.909 8 N -0.620 5.620 9 C 0.522 3.478 10 O -0.593 6.593 11 C -0.110 4.110 12 C 0.044 3.956 13 C -0.544 4.544 14 H 0.076 0.924 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.976 3.024 18 H -0.261 1.261 19 H -0.287 1.287 20 H -0.261 1.261 21 C 0.115 3.885 22 C 0.054 3.946 23 H 0.026 0.974 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.101 0.899 36 H -0.019 1.019 37 H -0.019 1.019 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.728 -5.171 18.660 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.250 5.250 3 C -0.088 4.088 4 C -0.155 4.155 5 C -0.070 4.070 6 C -0.133 4.133 7 C -0.031 4.031 8 N -0.354 5.354 9 C 0.313 3.687 10 O -0.474 6.474 11 C -0.150 4.150 12 C 0.006 3.994 13 C -0.582 4.582 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.799 3.201 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.186 1.186 21 C -0.008 4.008 22 C -0.074 4.074 23 H 0.045 0.955 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.120 0.880 36 H -0.001 1.001 37 H -0.001 1.001 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.686 -5.179 18.364 26.706 hybrid contribution 0.491 0.806 -1.509 1.780 sum -18.195 -4.373 16.854 25.184 Atomic orbital electron populations 1.22570 0.86870 1.02854 1.01090 1.64880 1.08952 1.14840 1.36373 1.22961 0.95119 0.89838 1.00887 1.22252 0.98778 0.95019 0.99477 1.21382 0.95959 0.96569 0.93120 1.22417 0.90492 1.01037 0.99323 1.22436 0.99311 1.00531 0.80776 1.48711 1.06500 1.65697 1.14528 1.21085 0.89425 0.75362 0.82812 1.90645 1.81466 1.49657 1.25638 1.21581 0.88357 1.04004 1.01046 1.18680 0.94197 0.94207 0.92302 1.21670 0.91890 1.44613 1.00032 0.90540 1.26172 1.05107 0.94561 0.94650 1.70183 1.36519 1.45466 1.05684 0.85344 0.77709 0.79296 0.77717 1.18580 1.21301 1.18602 1.22060 0.79934 1.01450 0.97310 1.23015 0.92381 1.00501 0.91453 0.95549 0.90418 0.90504 0.89317 0.93654 0.92597 0.90037 0.87909 0.88893 0.90444 0.90036 0.88137 0.88047 1.00066 1.00102 0.92814 0.91141 0.92753 0.93558 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.40 127.69 1.20 1.37 16 2 N -0.53 -7.65 5.56 -909.70 -5.06 -12.71 16 3 C 0.04 0.58 6.73 86.55 0.58 1.17 16 4 C -0.12 -2.07 6.08 31.04 0.19 -1.88 16 5 C -0.07 -1.22 0.69 -51.89 -0.04 -1.25 16 6 C -0.10 -1.40 5.86 31.31 0.18 -1.22 16 7 C 0.09 1.86 6.47 86.81 0.56 2.42 16 8 N -0.62 -18.68 3.34 -813.36 -2.72 -21.40 16 9 C 0.52 21.84 7.85 87.65 0.69 22.53 16 10 O -0.59 -31.08 16.26 -3.03 -0.05 -31.13 16 11 C -0.11 -4.68 4.83 29.85 0.14 -4.53 16 12 C 0.04 2.52 4.26 29.85 0.13 2.65 16 13 C -0.54 -31.58 9.11 25.60 0.23 -31.34 16 14 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 15 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 16 N -0.94 -60.51 13.29 21.45 0.28 -60.23 16 17 Si 0.98 44.70 29.54 68.60 2.03 46.72 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 21 C 0.12 2.94 5.91 86.21 0.51 3.45 16 22 C 0.05 0.81 5.57 85.96 0.48 1.29 16 23 H 0.03 0.31 8.01 -2.39 -0.02 0.30 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 0.66 7.73 -2.38 -0.02 0.64 16 28 H 0.06 1.17 7.61 -2.39 -0.02 1.15 16 29 H 0.08 1.39 7.79 -2.38 -0.02 1.37 16 30 H 0.10 1.26 7.93 -2.39 -0.02 1.24 16 31 H 0.09 1.15 7.81 -2.39 -0.02 1.13 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 35 H 0.10 3.81 8.14 -2.38 -0.02 3.79 16 36 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 37 H -0.02 -1.27 8.10 -2.39 -0.02 -1.28 16 38 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.07 1.72 8.06 -2.39 -0.02 1.70 16 40 H 0.05 1.62 7.61 -2.39 -0.02 1.60 16 41 H 0.05 0.73 7.90 -2.39 -0.02 0.71 16 42 H 0.10 1.27 7.79 -2.38 -0.02 1.25 16 Total: -1.00 -77.49 335.04 0.77 -76.71 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.97 Total: 7.37 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.32 Total: -5.33 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -7.49 Total: -94.34 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.05 Total: -31.13 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -77.49 0.77 -76.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334500604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.902 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds