Wall clock time and date at job start Mon Mar 30 2020 01:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46349 * 111.00242 * 2 1 4 4 C 1.53781 * 111.83814 * 178.39263 * 3 2 1 5 5 C 1.51965 * 106.99581 * 56.99940 * 4 3 2 6 6 H 1.09003 * 111.08015 * 59.60126 * 5 4 3 7 7 C 1.53577 * 115.61173 * 187.47795 * 5 4 3 8 8 C 1.55408 * 101.70144 * 153.92978 * 7 5 4 9 9 N 1.48304 * 107.18393 * 337.35134 * 8 7 5 10 10 C 1.34775 * 126.50454 * 174.74940 * 9 8 7 11 11 O 1.21282 * 119.99906 * 180.02562 * 10 9 8 12 12 C 1.50704 * 120.00039 * 0.02788 * 10 9 8 13 13 C 1.52997 * 109.46985 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.46985 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99707 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99823 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47421 * 89.99825 * 18 16 14 20 20 H 1.48498 * 109.47067 * 210.00344 * 18 16 14 21 21 H 1.48504 * 109.47044 * 329.99877 * 18 16 14 22 22 C 1.45609 * 106.77363 * 354.83926 * 9 8 7 23 23 H 1.09001 * 108.28208 * 275.04004 * 22 9 8 24 24 C 1.47729 * 110.99582 * 232.77044 * 2 1 3 25 25 H 1.09000 * 109.46928 * 63.94934 * 1 2 3 26 26 H 1.08999 * 109.47537 * 183.95556 * 1 2 3 27 27 H 1.09000 * 109.46766 * 303.95727 * 1 2 3 28 28 H 1.09004 * 109.00386 * 57.78888 * 3 2 1 29 29 H 1.08999 * 108.94228 * 298.96250 * 3 2 1 30 30 H 1.09000 * 109.94890 * 297.63040 * 4 3 2 31 31 H 1.08994 * 110.01515 * 176.41276 * 4 3 2 32 32 H 1.09001 * 110.97672 * 35.82566 * 7 5 4 33 33 H 1.08994 * 110.97971 * 272.03467 * 7 5 4 34 34 H 1.09002 * 109.92553 * 96.79658 * 8 7 5 35 35 H 1.08996 * 109.92310 * 217.91246 * 8 7 5 36 36 H 1.08994 * 109.47313 * 300.00133 * 12 10 9 37 37 H 1.09002 * 109.46823 * 59.99660 * 12 10 9 38 38 H 1.08995 * 109.47449 * 299.99796 * 13 12 10 39 39 H 1.08998 * 109.46891 * 60.00368 * 13 12 10 40 40 H 0.97004 * 119.99566 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.91526 * 303.72197 * 24 2 1 42 42 H 1.08994 * 109.91077 * 64.80763 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9936 1.3663 0.0000 4 6 3.5307 1.3889 0.0400 5 6 4.0181 0.5918 -1.1585 6 1 3.6582 1.0265 -2.0910 7 6 5.5311 0.3347 -1.2140 8 6 5.5984 -0.9712 -2.0538 9 7 4.2799 -1.6392 -1.9314 10 6 3.8801 -2.7495 -2.5825 11 8 2.7690 -3.1969 -2.3924 12 6 4.8138 -3.4349 -3.5467 13 6 4.1199 -4.6605 -4.1443 14 6 5.0537 -5.3464 -5.1080 15 1 6.0433 -4.9481 -5.2769 16 6 4.6448 -6.4822 -5.7740 17 7 3.4399 -6.9675 -5.5679 18 14 5.8026 -7.3327 -6.9680 19 1 6.6052 -8.3485 -6.2407 20 1 5.0124 -7.9974 -8.0352 21 1 6.7106 -6.3281 -7.5775 22 6 3.5028 -0.8632 -0.9753 23 1 3.7560 -1.2047 0.0284 24 6 1.9984 -0.8344 -1.0982 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3634 -1.0252 0.0709 27 1 -0.3633 0.5740 0.8524 28 1 1.6079 1.8945 0.8720 29 1 1.6543 1.8755 -0.9020 30 1 3.8855 0.9284 0.9621 31 1 3.8905 2.4157 -0.0250 32 1 5.9371 0.1775 -0.2147 33 1 6.0474 1.1508 -1.7194 34 1 5.7978 -0.7314 -3.0982 35 1 6.3820 -1.6222 -1.6661 36 1 5.0829 -2.7438 -4.3454 37 1 5.7145 -3.7489 -3.0191 38 1 3.8512 -5.3516 -3.3454 39 1 3.2190 -4.3469 -4.6717 40 1 3.1524 -7.7668 -6.0362 41 1 1.6003 -1.8462 -1.0208 42 1 1.7241 -0.4003 -2.0596 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334590148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:51 Heat of formation + Delta-G solvation = -60.265003 kcal Electronic energy + Delta-G solvation = -20863.820984 eV Core-core repulsion = 17842.222680 eV Total energy + Delta-G solvation = -3021.598304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71589 -39.67061 -37.56200 -35.59948 -34.05289 -33.05180 -31.39970 -30.79211 -27.74805 -27.08491 -24.88655 -24.04953 -22.86226 -22.47746 -21.08247 -19.85658 -18.70186 -17.53358 -17.22179 -16.73132 -16.48155 -16.20282 -15.98360 -15.70904 -15.30283 -14.84145 -14.60216 -14.27401 -14.18517 -13.77104 -13.57475 -13.31795 -13.18751 -12.96040 -12.89206 -12.80440 -12.51779 -12.47034 -12.16031 -11.95838 -11.69876 -11.63276 -11.55765 -11.32130 -11.27232 -10.58278 -10.55474 -9.62788 -9.36029 -8.19205 -6.33852 1.41221 1.44514 1.55408 1.65723 1.92864 2.42164 2.89717 3.13687 3.29135 3.61670 3.77879 3.91942 4.06782 4.08187 4.16232 4.31390 4.40258 4.43097 4.46098 4.51093 4.51664 4.66321 4.69438 4.75636 4.90365 4.91931 4.93229 4.94848 5.00596 5.08905 5.10761 5.21094 5.37898 5.45979 5.50946 5.59531 5.82619 5.93300 6.13165 6.15520 6.52393 6.84422 7.24629 7.36648 8.93684 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032370 B = 0.004084 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.778795 B = 6854.155445 C = 7605.123731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.560 5.560 3 C 0.053 3.947 4 C -0.096 4.096 5 C -0.100 4.100 6 H 0.074 0.926 7 C -0.107 4.107 8 C 0.091 3.909 9 N -0.618 5.618 10 C 0.522 3.478 11 O -0.585 6.585 12 C -0.110 4.110 13 C 0.044 3.956 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.976 3.024 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.254 1.254 22 C 0.124 3.876 23 H 0.066 0.934 24 C 0.072 3.928 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.100 0.900 38 H -0.019 1.019 39 H -0.020 1.020 40 H 0.263 0.737 41 H 0.056 0.944 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 22.312 12.012 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.286 5.286 3 C -0.074 4.074 4 C -0.134 4.134 5 C -0.119 4.119 6 H 0.093 0.907 7 C -0.145 4.145 8 C -0.030 4.030 9 N -0.353 5.353 10 C 0.313 3.687 11 O -0.465 6.465 12 C -0.149 4.149 13 C 0.007 3.993 14 C -0.581 4.581 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.178 1.178 22 C 0.019 3.981 23 H 0.084 0.916 24 C -0.056 4.056 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.118 0.882 38 H -0.001 1.001 39 H -0.001 1.001 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 3.914 21.670 12.439 25.291 hybrid contribution -0.645 -0.891 -1.514 1.872 sum 3.269 20.779 10.925 23.703 Atomic orbital electron populations 1.22324 0.85878 1.02253 1.01223 1.61175 1.08583 1.14120 1.44682 1.22218 0.96447 0.87337 1.01442 1.21498 0.93289 1.01549 0.97033 1.22298 0.96822 0.92750 1.00060 0.90710 1.22533 0.94640 0.95820 1.01491 1.22813 0.83143 0.94911 1.02173 1.48499 1.17442 1.25720 1.43638 1.21109 0.87722 0.79305 0.80609 1.90630 1.23863 1.65734 1.66259 1.21572 0.98151 0.97935 0.97263 1.18677 0.94599 0.91861 0.94210 1.21695 1.01034 1.10808 1.24596 0.90573 1.26162 0.96939 0.98132 0.99192 1.70189 1.20401 1.23205 1.44035 0.85290 0.78284 0.78643 0.77840 1.19619 1.21131 1.17789 1.21332 0.91722 0.92592 0.92407 0.91560 1.21620 0.95112 0.97389 0.91496 0.95887 0.92494 0.88778 0.88528 0.95462 0.90229 0.87551 0.88776 0.87023 0.90044 0.89842 0.88234 0.88150 1.00066 1.00109 0.92834 0.92522 0.96670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.61 127.69 1.23 1.89 16 2 N -0.56 -13.58 4.82 -924.07 -4.46 -18.04 16 3 C 0.05 0.89 5.41 86.67 0.47 1.36 16 4 C -0.10 -1.27 5.78 30.52 0.18 -1.10 16 5 C -0.10 -1.79 2.67 -10.10 -0.03 -1.81 16 6 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 7 C -0.11 -1.41 6.56 31.62 0.21 -1.20 16 8 C 0.09 1.84 6.61 86.86 0.57 2.42 16 9 N -0.62 -19.44 3.30 -789.60 -2.61 -22.05 16 10 C 0.52 22.20 7.81 87.66 0.68 22.88 16 11 O -0.58 -30.63 14.32 -3.04 -0.04 -30.67 16 12 C -0.11 -4.70 4.90 29.85 0.15 -4.56 16 13 C 0.04 2.56 4.26 29.85 0.13 2.69 16 14 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 15 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 16 C -0.01 -0.41 5.46 84.66 0.46 0.06 16 17 N -0.94 -60.68 13.29 21.45 0.28 -60.39 16 18 Si 0.98 44.86 29.54 68.60 2.03 46.89 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 22 C 0.12 3.44 2.57 45.34 0.12 3.56 16 23 H 0.07 1.91 8.01 -2.39 -0.02 1.89 16 24 C 0.07 2.28 4.61 85.48 0.39 2.67 16 25 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 1.49 8.12 -2.39 -0.02 1.47 16 28 H 0.10 1.24 8.12 -2.39 -0.02 1.22 16 29 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 1.06 8.06 -2.39 -0.02 1.04 16 31 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 1.01 8.13 -2.39 -0.02 0.99 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 38 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 39 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 40 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 41 H 0.06 2.26 6.74 -2.39 -0.02 2.25 16 42 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -79.51 330.95 0.96 -78.55 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.96 Total: 8.30 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 4.79 Total: -2.59 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -6.78 Total: -100.47 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.04 Total: -30.67 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -79.51 0.96 -78.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.281 kcal (2) G-P(sol) polarization free energy of solvation -79.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds