Wall clock time and date at job start Mon Mar 30 2020 01:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46580 * 111.00182 * 2 1 4 4 C 1.52917 * 108.48217 * 187.76216 * 3 2 1 5 5 C 1.53019 * 109.51886 * 295.57733 * 4 3 2 6 6 H 1.08997 * 111.13273 * 285.92348 * 5 4 3 7 7 C 1.55242 * 107.16889 * 163.34430 * 5 4 3 8 8 C 1.54207 * 103.33232 * 270.39616 * 7 5 4 9 9 N 1.47161 * 106.52593 * 331.72482 * 8 7 5 10 10 C 1.34776 * 125.69089 * 196.86777 * 9 8 7 11 11 O 1.21274 * 119.99976 * 180.02562 * 10 9 8 12 12 C 1.50700 * 120.00192 * 0.02562 * 10 9 8 13 13 C 1.52997 * 109.47204 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46997 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00068 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00281 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00092 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46928 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47133 * 120.00368 * 18 16 14 21 21 H 1.48500 * 109.47516 * 240.00724 * 18 16 14 22 22 C 1.45884 * 108.61990 * 16.86821 * 9 8 7 23 23 H 1.08997 * 105.05918 * 250.41689 * 22 9 8 24 24 C 1.45385 * 111.00337 * 125.82818 * 2 1 3 25 25 H 1.09000 * 109.47029 * 56.04451 * 1 2 3 26 26 H 1.08998 * 109.47062 * 176.04650 * 1 2 3 27 27 H 1.08999 * 109.46640 * 296.04777 * 1 2 3 28 28 H 1.09000 * 109.63531 * 68.06224 * 3 2 1 29 29 H 1.09005 * 109.80594 * 307.55797 * 3 2 1 30 30 H 1.08991 * 109.46455 * 55.59393 * 4 3 2 31 31 H 1.08998 * 109.46582 * 175.56748 * 4 3 2 32 32 H 1.08992 * 110.65255 * 151.92979 * 7 5 4 33 33 H 1.08999 * 110.64384 * 28.84925 * 7 5 4 34 34 H 1.09008 * 110.04384 * 212.46185 * 8 7 5 35 35 H 1.09000 * 110.05466 * 90.99936 * 8 7 5 36 36 H 1.09008 * 109.47008 * 300.00288 * 12 10 9 37 37 H 1.09007 * 109.46974 * 59.99401 * 12 10 9 38 38 H 1.08997 * 109.47100 * 299.99655 * 13 12 10 39 39 H 1.08999 * 109.46875 * 60.00092 * 13 12 10 40 40 H 0.96997 * 120.00637 * 179.97438 * 17 16 14 41 41 H 1.09002 * 108.27416 * 308.86631 * 24 2 1 42 42 H 1.08998 * 108.27451 * 65.92463 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9943 1.3684 0.0000 4 6 3.5096 1.3060 -0.1959 5 6 4.1512 0.6007 1.0010 6 1 4.1585 1.2457 1.8795 7 6 5.5850 0.1863 0.5740 8 6 5.3849 -1.2202 -0.0259 9 7 4.2139 -1.8009 0.6502 10 6 3.8835 -3.1074 0.6670 11 8 2.8905 -3.4741 1.2590 12 6 4.7477 -4.1126 -0.0496 13 6 4.1538 -5.5118 0.1242 14 6 5.0178 -6.5169 -0.5931 15 1 5.9023 -6.1904 -1.1198 16 6 4.6796 -7.8534 -0.5759 17 7 3.6029 -8.2512 0.0659 18 14 5.7509 -9.0994 -1.4643 19 1 6.8952 -8.4016 -2.1038 20 1 6.2618 -10.0970 -0.4901 21 1 4.9478 -9.7902 -2.5050 22 6 3.4705 -0.7265 1.2992 23 1 3.6283 -0.8779 2.3670 24 6 1.9901 -0.7945 1.1004 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 -0.3632 0.4513 0.9233 28 1 1.7675 1.8478 0.9523 29 1 1.5431 1.9373 -0.8130 30 1 3.7355 0.7527 -1.1073 31 1 3.9073 2.3175 -0.2772 32 1 6.2468 0.1445 1.4390 33 1 5.9757 0.8725 -0.1774 34 1 6.2662 -1.8343 0.1596 35 1 5.1993 -1.1465 -1.0975 36 1 4.7894 -3.8651 -1.1104 37 1 5.7542 -4.0901 0.3685 38 1 4.1118 -5.7595 1.1848 39 1 3.1476 -5.5339 -0.2943 40 1 3.3647 -9.1914 0.0777 41 1 1.5062 -0.4641 2.0196 42 1 1.7184 -1.8360 0.9287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334590158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:57 Heat of formation + Delta-G solvation = -36.829157 kcal Electronic energy + Delta-G solvation = -21074.455845 eV Core-core repulsion = 18053.873795 eV Total energy + Delta-G solvation = -3020.582050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.68755 -38.19768 -36.49595 -33.44732 -33.02128 -31.32803 -30.35844 -29.61652 -26.27696 -25.73717 -23.63557 -23.21785 -21.84128 -21.37663 -19.37130 -18.18682 -16.85506 -16.39726 -15.78538 -15.60325 -15.15442 -15.02075 -14.42498 -14.37857 -13.93801 -13.86405 -13.21766 -12.80739 -12.70473 -12.46431 -12.19979 -12.13125 -11.95379 -11.72536 -11.63849 -11.56287 -11.11217 -10.92705 -10.91250 -10.55181 -10.52952 -10.34150 -9.90075 -9.58780 -9.08740 -8.90100 -8.31928 -8.26816 -8.21417 -5.92734 -3.96767 3.25058 3.34910 3.36609 3.42293 3.45800 3.85387 4.35171 4.43119 4.50534 4.56137 4.97464 5.03132 5.05638 5.23223 5.25773 5.28188 5.38651 5.42343 5.47926 5.52993 5.60514 5.65047 5.70751 5.76752 5.81467 5.84148 5.89299 5.97063 6.16587 6.18289 6.30604 6.34627 6.76595 6.96268 7.04780 7.16295 7.78724 7.91159 7.94357 8.11310 8.42767 8.81197 9.11941 9.66582 11.18344 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.004357 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.553287 B = 6425.592229 C = 6991.796462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.110 4.110 5 C -0.092 4.092 6 H 0.089 0.911 7 C -0.127 4.127 8 C 0.104 3.896 9 N -0.616 5.616 10 C 0.530 3.470 11 O -0.533 6.533 12 C -0.124 4.124 13 C 0.037 3.963 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.150 3.850 23 H 0.048 0.952 24 C 0.047 3.953 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.022 0.978 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.030 0.970 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 22.695 0.278 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.148 4.148 5 C -0.111 4.111 6 H 0.107 0.893 7 C -0.165 4.165 8 C -0.020 4.020 9 N -0.353 5.353 10 C 0.321 3.679 11 O -0.409 6.409 12 C -0.163 4.163 13 C -0.001 4.001 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C 0.046 3.954 23 H 0.066 0.934 24 C -0.081 4.081 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.390 21.993 0.250 21.998 hybrid contribution 0.277 -0.316 0.314 0.524 sum 0.667 21.677 0.563 21.695 Atomic orbital electron populations 1.22312 0.86811 1.02605 0.99985 1.60910 1.07567 1.12545 1.45849 1.21996 0.95629 0.89565 1.00038 1.21663 0.94392 1.00193 0.98558 1.21817 0.95099 0.95260 0.98936 0.89286 1.22738 0.96252 0.96177 1.01315 1.22001 0.89141 0.93828 0.96997 1.48367 1.26057 1.05850 1.55010 1.21249 0.86092 0.80531 0.80000 1.90609 1.27712 1.78529 1.44023 1.21848 0.98548 0.96605 0.99345 1.18908 0.96310 0.86853 0.97989 1.21259 1.09995 0.92074 1.32982 0.92583 1.25018 0.95217 0.98561 0.95567 1.70007 1.24790 1.15769 1.42319 0.86547 0.80513 0.81472 0.79500 1.19744 1.21051 1.21026 1.19896 0.91305 0.87328 0.96915 0.93364 1.21421 0.93891 1.01442 0.91346 0.91468 0.91102 0.95939 0.95202 0.90764 0.90529 0.91338 0.90799 0.89782 0.90532 0.91639 0.90315 0.90438 0.95855 0.95802 0.93046 0.95227 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.53 60.06 0.57 0.92 16 2 N -0.54 -7.12 4.87 -246.72 -1.20 -8.32 16 3 C 0.06 0.56 5.49 -4.04 -0.02 0.54 16 4 C -0.11 -1.01 5.18 -26.76 -0.14 -1.14 16 5 C -0.09 -0.91 3.34 -89.87 -0.30 -1.21 16 6 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.13 -1.12 6.37 -24.91 -0.16 -1.28 16 8 C 0.10 1.23 6.33 -3.05 -0.02 1.21 16 9 N -0.62 -9.78 3.23 -167.79 -0.54 -10.32 16 10 C 0.53 10.85 7.60 -10.99 -0.08 10.77 16 11 O -0.53 -12.87 14.12 5.56 0.08 -12.79 16 12 C -0.12 -2.63 4.72 -27.88 -0.13 -2.76 16 13 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 14 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.77 13.29 55.43 0.74 -27.04 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.15 2.09 2.66 -70.43 -0.19 1.91 16 23 H 0.05 0.71 8.04 -51.93 -0.42 0.29 16 24 C 0.05 0.71 5.08 -6.36 -0.03 0.67 16 25 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.08 0.80 7.74 -51.93 -0.40 0.40 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.58 7.82 -51.93 -0.41 0.17 16 34 H 0.08 0.87 7.73 -51.92 -0.40 0.47 16 35 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.08 1.57 8.14 -51.92 -0.42 1.14 16 37 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.03 0.42 8.03 -51.93 -0.42 0.00 16 42 H 0.11 2.04 5.48 -51.93 -0.28 1.75 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -33.92 327.78 -9.38 -43.30 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -7.34 Total: -3.33 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.03 Total: -3.32 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -1.01 Total: -45.68 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.92 -9.38 -43.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.475 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds