Wall clock time and date at job start Mon Mar 30 2020 01:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46580 * 111.00182 * 2 1 4 4 C 1.52917 * 108.48217 * 187.76216 * 3 2 1 5 5 C 1.53019 * 109.51886 * 295.57733 * 4 3 2 6 6 H 1.08997 * 111.13273 * 285.92348 * 5 4 3 7 7 C 1.55242 * 107.16889 * 163.34430 * 5 4 3 8 8 C 1.54207 * 103.33232 * 270.39616 * 7 5 4 9 9 N 1.47161 * 106.52593 * 331.72482 * 8 7 5 10 10 C 1.34776 * 125.69089 * 196.86777 * 9 8 7 11 11 O 1.21274 * 119.99976 * 180.02562 * 10 9 8 12 12 C 1.50700 * 120.00192 * 0.02562 * 10 9 8 13 13 C 1.52997 * 109.47204 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46997 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00068 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00281 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00092 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46928 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47133 * 120.00368 * 18 16 14 21 21 H 1.48500 * 109.47516 * 240.00724 * 18 16 14 22 22 C 1.45884 * 108.61990 * 16.86821 * 9 8 7 23 23 H 1.08997 * 105.05918 * 250.41689 * 22 9 8 24 24 C 1.45385 * 111.00337 * 125.82818 * 2 1 3 25 25 H 1.09000 * 109.47029 * 56.04451 * 1 2 3 26 26 H 1.08998 * 109.47062 * 176.04650 * 1 2 3 27 27 H 1.08999 * 109.46640 * 296.04777 * 1 2 3 28 28 H 1.09000 * 109.63531 * 68.06224 * 3 2 1 29 29 H 1.09005 * 109.80594 * 307.55797 * 3 2 1 30 30 H 1.08991 * 109.46455 * 55.59393 * 4 3 2 31 31 H 1.08998 * 109.46582 * 175.56748 * 4 3 2 32 32 H 1.08992 * 110.65255 * 151.92979 * 7 5 4 33 33 H 1.08999 * 110.64384 * 28.84925 * 7 5 4 34 34 H 1.09008 * 110.04384 * 212.46185 * 8 7 5 35 35 H 1.09000 * 110.05466 * 90.99936 * 8 7 5 36 36 H 1.09008 * 109.47008 * 300.00288 * 12 10 9 37 37 H 1.09007 * 109.46974 * 59.99401 * 12 10 9 38 38 H 1.08997 * 109.47100 * 299.99655 * 13 12 10 39 39 H 1.08999 * 109.46875 * 60.00092 * 13 12 10 40 40 H 0.96997 * 120.00637 * 179.97438 * 17 16 14 41 41 H 1.09002 * 108.27416 * 308.86631 * 24 2 1 42 42 H 1.08998 * 108.27451 * 65.92463 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9943 1.3684 0.0000 4 6 3.5096 1.3060 -0.1959 5 6 4.1512 0.6007 1.0010 6 1 4.1585 1.2457 1.8795 7 6 5.5850 0.1863 0.5740 8 6 5.3849 -1.2202 -0.0259 9 7 4.2139 -1.8009 0.6502 10 6 3.8835 -3.1074 0.6670 11 8 2.8905 -3.4741 1.2590 12 6 4.7477 -4.1126 -0.0496 13 6 4.1538 -5.5118 0.1242 14 6 5.0178 -6.5169 -0.5931 15 1 5.9023 -6.1904 -1.1198 16 6 4.6796 -7.8534 -0.5759 17 7 3.6029 -8.2512 0.0659 18 14 5.7509 -9.0994 -1.4643 19 1 6.8952 -8.4016 -2.1038 20 1 6.2618 -10.0970 -0.4901 21 1 4.9478 -9.7902 -2.5050 22 6 3.4705 -0.7265 1.2992 23 1 3.6283 -0.8779 2.3670 24 6 1.9901 -0.7945 1.1004 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 -0.3632 0.4513 0.9233 28 1 1.7675 1.8478 0.9523 29 1 1.5431 1.9373 -0.8130 30 1 3.7355 0.7527 -1.1073 31 1 3.9073 2.3175 -0.2772 32 1 6.2468 0.1445 1.4390 33 1 5.9757 0.8725 -0.1774 34 1 6.2662 -1.8343 0.1596 35 1 5.1993 -1.1465 -1.0975 36 1 4.7894 -3.8651 -1.1104 37 1 5.7542 -4.0901 0.3685 38 1 4.1118 -5.7595 1.1848 39 1 3.1476 -5.5339 -0.2943 40 1 3.3647 -9.1914 0.0777 41 1 1.5062 -0.4641 2.0196 42 1 1.7184 -1.8360 0.9287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334590158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:57 Heat of formation + Delta-G solvation = -60.802551 kcal Electronic energy + Delta-G solvation = -21075.495409 eV Core-core repulsion = 18053.873795 eV Total energy + Delta-G solvation = -3021.621614 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83582 -39.60186 -37.58360 -35.60045 -34.10410 -33.12613 -31.58257 -30.70015 -27.72614 -27.22923 -24.92886 -24.25593 -23.16122 -22.69649 -20.57689 -19.54009 -18.68591 -17.65171 -17.36597 -16.69510 -16.47821 -16.32824 -16.03577 -15.73038 -15.18018 -14.96541 -14.32917 -14.18225 -14.12908 -13.91471 -13.58222 -13.19193 -13.12946 -12.97134 -12.85106 -12.74149 -12.57375 -12.50958 -12.44070 -11.96213 -11.74277 -11.57993 -11.50020 -11.27719 -11.10086 -10.58487 -10.55350 -9.57301 -9.24251 -8.18531 -6.33011 1.41783 1.43725 1.57100 1.67082 2.03992 2.43237 2.90390 3.14449 3.45775 3.57495 3.70451 3.98591 4.05972 4.14606 4.25034 4.29317 4.41006 4.46931 4.48546 4.52108 4.57732 4.60546 4.64461 4.78051 4.83733 4.91440 4.92553 4.98900 5.03581 5.12421 5.22177 5.24399 5.41274 5.47739 5.60536 5.63100 5.83644 6.05296 6.16407 6.23247 6.54366 6.85345 7.26064 7.37459 8.94632 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.004357 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.553287 B = 6425.592229 C = 6991.796462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.562 5.562 3 C 0.052 3.948 4 C -0.106 4.106 5 C -0.085 4.085 6 H 0.112 0.888 7 C -0.113 4.113 8 C 0.089 3.911 9 N -0.609 5.609 10 C 0.524 3.476 11 O -0.586 6.586 12 C -0.110 4.110 13 C 0.045 3.955 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.976 3.024 19 H -0.252 1.252 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.143 3.857 23 H 0.035 0.965 24 C 0.055 3.945 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.031 0.969 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.101 0.899 38 H -0.018 1.018 39 H -0.020 1.020 40 H 0.263 0.737 41 H 0.029 0.971 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 25.421 -1.164 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.287 5.287 3 C -0.075 4.075 4 C -0.143 4.143 5 C -0.104 4.104 6 H 0.130 0.870 7 C -0.151 4.151 8 C -0.032 4.032 9 N -0.343 5.343 10 C 0.315 3.685 11 O -0.466 6.466 12 C -0.149 4.149 13 C 0.007 3.993 14 C -0.580 4.580 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.175 1.175 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.038 3.962 23 H 0.053 0.947 24 C -0.074 4.074 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.000 1.000 39 H -0.002 1.002 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.151 24.794 -1.212 25.023 hybrid contribution -0.642 -1.107 0.785 1.501 sum 2.509 23.687 -0.426 23.824 Atomic orbital electron populations 1.22326 0.86279 1.01690 1.01383 1.60902 1.08356 1.14567 1.44879 1.22155 0.96544 0.87623 1.01164 1.21690 0.93515 1.01820 0.97314 1.21881 0.95219 0.92865 1.00452 0.86962 1.22759 0.95619 0.94262 1.02447 1.22414 0.87555 0.95878 0.97401 1.48290 1.27209 1.04746 1.54033 1.21019 0.85361 0.82297 0.79870 1.90594 1.29736 1.79895 1.46386 1.21574 0.99162 0.93340 1.00841 1.18673 0.94635 0.91079 0.94910 1.21719 1.10565 0.92669 1.33014 0.90607 1.26155 0.96657 1.01279 0.96314 1.70190 1.27126 1.16489 1.44069 0.85245 0.78719 0.78108 0.77996 1.17502 1.20516 1.20583 1.20162 0.90915 0.89069 0.96015 0.94700 1.21171 0.94958 0.99147 0.92083 0.89303 0.93400 0.95030 0.94327 0.89103 0.91767 0.87740 0.89652 0.86541 0.89705 0.90837 0.88497 0.88097 0.99980 1.00205 0.92840 0.95294 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.53 127.69 1.22 1.93 16 2 N -0.56 -14.52 4.87 -934.47 -4.55 -19.07 16 3 C 0.05 0.90 5.49 86.34 0.47 1.38 16 4 C -0.11 -1.50 5.18 30.57 0.16 -1.35 16 5 C -0.09 -1.39 3.34 -10.31 -0.03 -1.42 16 6 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 7 C -0.11 -1.50 6.37 31.77 0.20 -1.30 16 8 C 0.09 1.89 6.33 86.66 0.55 2.44 16 9 N -0.61 -19.28 3.23 -803.17 -2.60 -21.88 16 10 C 0.52 22.47 7.60 87.66 0.67 23.14 16 11 O -0.59 -30.80 14.12 -3.01 -0.04 -30.84 16 12 C -0.11 -4.77 4.72 29.85 0.14 -4.63 16 13 C 0.04 2.60 4.26 29.85 0.13 2.73 16 14 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 15 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 16 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 17 N -0.94 -60.88 13.29 21.45 0.28 -60.59 16 18 Si 0.98 45.08 29.54 68.60 2.03 47.11 16 19 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 C 0.14 3.92 2.66 43.70 0.12 4.04 16 23 H 0.03 1.04 8.04 -2.39 -0.02 1.02 16 24 C 0.06 1.72 5.08 85.48 0.43 2.16 16 25 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 1.29 8.07 -2.38 -0.02 1.27 16 30 H 0.06 1.11 7.74 -2.39 -0.02 1.09 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.12 0.90 7.82 -2.39 -0.02 0.88 16 34 H 0.08 1.68 7.73 -2.38 -0.02 1.66 16 35 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 36 H 0.10 3.83 8.14 -2.38 -0.02 3.81 16 37 H 0.10 3.88 7.93 -2.38 -0.02 3.86 16 38 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 39 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 40 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 41 H 0.03 0.87 8.03 -2.39 -0.02 0.85 16 42 H 0.06 2.42 5.48 -2.39 -0.01 2.40 16 Total: -1.00 -80.24 327.78 0.83 -79.40 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.97 Total: 8.23 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.75 Total: -2.36 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -6.86 Total: -101.54 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.04 Total: -30.84 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -80.24 0.83 -79.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.601 kcal (2) G-P(sol) polarization free energy of solvation -80.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds