Wall clock time and date at job start Mon Mar 30 2020 01:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48564 * 110.99666 * 2 1 4 4 C 1.54384 * 104.59378 * 200.96347 * 3 2 1 5 5 C 1.54253 * 105.05979 * 23.85212 * 4 3 2 6 6 C 1.48564 * 111.00144 * 244.58548 * 2 1 3 7 7 H 1.09006 * 110.40678 * 40.25563 * 6 2 1 8 8 C 1.50699 * 110.50907 * 277.86755 * 6 2 1 9 9 O 1.21289 * 120.00131 * 343.11330 * 8 6 2 10 10 N 1.34778 * 119.99529 * 163.11702 * 8 6 2 11 11 C 1.37095 * 119.99682 * 179.97438 * 10 8 6 12 12 H 1.08006 * 120.00300 * 142.05499 * 11 10 8 13 13 C 1.38952 * 120.00298 * 322.05765 * 11 10 8 14 14 N 1.31408 * 120.00389 * 154.25326 * 13 11 10 15 15 Si 1.86801 * 119.99613 * 334.24918 * 13 11 10 16 16 H 1.48503 * 109.46934 * 95.15593 * 15 13 11 17 17 H 1.48503 * 109.47174 * 215.15662 * 15 13 11 18 18 H 1.48497 * 109.47403 * 335.15322 * 15 13 11 19 19 C 1.46494 * 120.00311 * 359.97438 * 10 8 6 20 20 C 1.54266 * 110.03152 * 242.61106 * 19 10 8 21 21 C 1.54968 * 104.16275 * 217.13465 * 20 19 10 22 22 C 1.54889 * 102.77173 * 37.88942 * 21 20 19 23 23 C 1.53875 * 110.03534 * 125.39489 * 19 10 8 24 24 H 1.09000 * 109.47014 * 175.42193 * 1 2 3 25 25 H 1.09003 * 109.47044 * 295.41267 * 1 2 3 26 26 H 1.08994 * 109.47528 * 55.41383 * 1 2 3 27 27 H 1.09000 * 110.41017 * 82.18797 * 3 2 1 28 28 H 1.08993 * 110.41308 * 319.74290 * 3 2 1 29 29 H 1.09000 * 110.32036 * 264.95733 * 4 3 2 30 30 H 1.08991 * 110.40868 * 142.79850 * 4 3 2 31 31 H 1.09000 * 110.32598 * 241.09970 * 5 4 3 32 32 H 1.09001 * 110.40718 * 118.94224 * 5 4 3 33 33 H 0.97002 * 120.00227 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.02093 * 4.00212 * 19 10 8 35 35 H 1.09004 * 110.48916 * 335.78399 * 20 19 10 36 36 H 1.09006 * 110.48654 * 98.42558 * 20 19 10 37 37 H 1.09001 * 110.71807 * 279.57567 * 21 20 19 38 38 H 1.08994 * 110.92242 * 156.29620 * 21 20 19 39 39 H 1.09002 * 110.47975 * 203.40671 * 22 21 20 40 40 H 1.08993 * 110.48910 * 80.76662 * 22 21 20 41 41 H 1.08994 * 110.03371 * 238.57135 * 23 19 10 42 42 H 1.09000 * 110.03097 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2503 -0.5345 5 6 3.4432 -0.0537 -1.3586 6 6 2.0014 -0.5952 -1.2527 7 1 1.4097 -0.2711 -2.1089 8 6 2.0102 -2.0994 -1.1604 9 8 1.9136 -2.6412 -0.0796 10 7 2.1256 -2.8424 -2.2790 11 6 2.1342 -4.2108 -2.1950 12 1 1.6354 -4.8013 -2.9493 13 6 2.7847 -4.8380 -1.1394 14 7 2.4056 -6.0352 -0.7523 15 14 4.1981 -3.9794 -0.2708 16 1 3.6856 -3.2759 0.9323 17 1 5.2119 -4.9847 0.1379 18 1 4.8207 -2.9952 -1.1921 19 6 2.2419 -2.1879 -3.5844 20 6 1.0382 -2.5638 -4.4730 21 6 1.6424 -2.6956 -5.8940 22 6 3.0195 -3.3502 -5.6211 23 6 3.5012 -2.6872 -4.3142 24 1 -0.3633 -1.0244 -0.0820 25 1 -0.3633 0.4410 0.9283 26 1 -0.3634 0.5833 -0.8460 27 1 2.0078 1.7916 1.0121 28 1 1.4097 2.0212 -0.6601 29 1 4.1482 1.1750 0.2933 30 1 3.6952 2.0995 -1.1695 31 1 4.1483 -0.7691 -0.9353 32 1 3.6941 0.1540 -2.3988 33 1 2.8600 -6.4732 -0.0156 34 1 2.2885 -1.1064 -3.4568 35 1 0.6084 -3.5127 -4.1519 36 1 0.2856 -1.7756 -4.4493 37 1 1.7651 -1.7148 -6.3533 38 1 1.0259 -3.3398 -6.5208 39 1 3.7117 -3.1357 -6.4353 40 1 2.9103 -4.4261 -5.4855 41 1 4.1586 -1.8480 -4.5414 42 1 4.0262 -3.4162 -3.6968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334987660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:52 Heat of formation + Delta-G solvation = -13.470177 kcal Electronic energy + Delta-G solvation = -22334.992941 eV Core-core repulsion = 19315.423812 eV Total energy + Delta-G solvation = -3019.569128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80677 -38.01168 -36.61304 -33.41468 -32.05963 -31.72465 -29.15736 -28.16657 -27.08528 -25.46494 -24.54748 -21.56610 -20.82010 -20.24225 -19.92215 -18.83328 -17.11643 -16.23007 -15.73970 -15.17905 -14.85257 -14.49452 -14.19654 -13.65130 -13.58827 -13.52112 -13.04661 -12.78191 -12.30122 -12.21300 -12.04171 -11.71014 -11.46949 -11.30759 -11.17470 -10.99148 -10.88710 -10.74669 -10.64638 -10.56565 -10.41832 -10.11100 -9.97595 -9.93539 -9.72187 -8.45772 -8.37398 -7.96897 -7.47071 -6.11617 -3.77778 3.37670 3.53748 3.78093 3.89202 4.11693 4.66989 4.68652 4.88281 4.92802 5.09057 5.11610 5.14429 5.31820 5.35595 5.49078 5.59933 5.62637 5.67964 5.73765 5.79470 5.85903 5.95771 5.99307 6.01823 6.07079 6.12786 6.16662 6.19414 6.29862 6.33702 6.35364 6.41373 6.50353 6.76312 6.86553 6.95805 7.10122 7.29117 7.94313 8.10403 8.91932 9.08425 9.56499 9.99909 10.93637 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.010456 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.497137 B = 2677.187692 C = 3593.832868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.488 5.488 3 C 0.032 3.968 4 C -0.122 4.122 5 C -0.117 4.117 6 C 0.049 3.951 7 H 0.061 0.939 8 C 0.455 3.545 9 O -0.522 6.522 10 N -0.458 5.458 11 C -0.347 4.347 12 H 0.093 0.907 13 C 0.098 3.902 14 N -0.861 5.861 15 Si 0.898 3.102 16 H -0.250 1.250 17 H -0.312 1.312 18 H -0.280 1.280 19 C 0.127 3.873 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.129 4.129 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.021 0.979 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.270 0.730 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 13.684 -6.725 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.212 5.212 3 C -0.096 4.096 4 C -0.160 4.160 5 C -0.156 4.156 6 C -0.063 4.063 7 H 0.079 0.921 8 C 0.243 3.757 9 O -0.401 6.401 10 N -0.180 5.180 11 C -0.472 4.472 12 H 0.111 0.889 13 C -0.111 4.111 14 N -0.496 5.496 15 Si 0.728 3.272 16 H -0.175 1.175 17 H -0.241 1.241 18 H -0.206 1.206 19 C 0.022 3.978 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.168 4.168 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.533 12.927 -5.568 14.085 hybrid contribution 0.396 0.807 -0.380 0.976 sum 0.929 13.734 -5.948 14.996 Atomic orbital electron populations 1.22469 0.87741 1.02662 1.00008 1.65041 1.08262 1.13465 1.34458 1.23138 0.95161 0.90441 1.00883 1.22277 0.96870 0.97144 0.99687 1.22303 0.95924 0.97150 1.00193 1.22658 0.96260 0.95553 0.91796 0.92098 1.19856 0.83013 0.87172 0.85673 1.90545 1.50618 1.71863 1.27115 1.43793 1.64949 1.06140 1.03150 1.18569 1.36655 0.78628 1.13369 0.88911 1.25182 0.96400 0.94424 0.95077 1.69815 1.38031 1.16039 1.25711 0.86678 0.79567 0.78786 0.82133 1.17500 1.24119 1.20579 1.21781 0.94513 0.95752 0.85771 1.22726 0.97427 1.02575 0.94289 1.22441 0.96861 0.99818 0.96791 1.22264 0.95920 1.00673 0.96637 1.22413 0.97474 1.00317 0.96554 0.90584 0.91493 0.96037 0.90176 0.94167 0.90998 0.91384 0.90700 0.90980 0.92031 0.91240 0.89793 0.92751 0.92331 0.92122 0.92690 0.91212 0.92965 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.44 60.06 0.57 0.89 16 2 N -0.49 -8.93 4.94 -231.72 -1.14 -10.08 16 3 C 0.03 0.44 6.49 -2.18 -0.01 0.43 16 4 C -0.12 -1.64 7.00 -25.35 -0.18 -1.82 16 5 C -0.12 -1.95 6.20 -25.36 -0.16 -2.11 16 6 C 0.05 0.94 1.67 -67.22 -0.11 0.82 16 7 H 0.06 1.05 6.63 -51.93 -0.34 0.70 16 8 C 0.45 11.02 4.88 -10.99 -0.05 10.97 16 9 O -0.52 -15.01 11.86 5.55 0.07 -14.95 16 10 N -0.46 -10.84 2.18 -106.54 -0.23 -11.07 16 11 C -0.35 -9.59 8.02 -14.93 -0.12 -9.71 16 12 H 0.09 2.68 7.10 -52.48 -0.37 2.30 16 13 C 0.10 2.92 4.67 -17.47 -0.08 2.83 16 14 N -0.86 -26.62 13.96 55.50 0.77 -25.84 16 15 Si 0.90 24.53 24.93 -169.99 -4.24 20.29 16 16 H -0.25 -7.31 6.23 56.52 0.35 -6.95 16 17 H -0.31 -8.42 7.11 56.52 0.40 -8.02 16 18 H -0.28 -7.22 6.88 56.52 0.39 -6.83 16 19 C 0.13 2.35 3.05 -66.81 -0.20 2.15 16 20 C -0.13 -2.21 6.43 -25.03 -0.16 -2.37 16 21 C -0.12 -1.69 6.91 -24.70 -0.17 -1.86 16 22 C -0.12 -1.78 6.83 -25.07 -0.17 -1.95 16 23 C -0.13 -2.26 6.24 -25.61 -0.16 -2.42 16 24 H 0.08 1.43 7.96 -51.93 -0.41 1.01 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.30 7.97 -51.93 -0.41 -0.12 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.49 7.90 -51.93 -0.41 0.08 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.47 7.52 -51.93 -0.39 1.08 16 32 H 0.07 1.02 7.57 -51.93 -0.39 0.63 16 33 H 0.27 7.94 8.31 -40.82 -0.34 7.60 16 34 H 0.07 1.15 4.85 -51.93 -0.25 0.90 16 35 H 0.08 1.65 6.65 -51.93 -0.35 1.30 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.78 7.16 -51.93 -0.37 1.41 16 LS Contribution 316.95 15.07 4.78 4.78 Total: -1.00 -33.39 316.95 -8.14 -41.53 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.13 Total: -0.52 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.02 Total: -4.14 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.60 Total: -46.99 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.07 Total: -14.95 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -4.24 Total: 20.29 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.39 -8.14 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334987660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.060 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds