Wall clock time and date at job start Mon Mar 30 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48564 * 110.99666 * 2 1 4 4 C 1.54384 * 104.59378 * 200.96347 * 3 2 1 5 5 C 1.54253 * 105.05979 * 23.85212 * 4 3 2 6 6 C 1.48564 * 111.00144 * 244.58548 * 2 1 3 7 7 H 1.09006 * 110.40678 * 40.25563 * 6 2 1 8 8 C 1.50699 * 110.50907 * 277.86755 * 6 2 1 9 9 O 1.21289 * 120.00131 * 343.11330 * 8 6 2 10 10 N 1.34778 * 119.99529 * 163.11702 * 8 6 2 11 11 C 1.37095 * 119.99682 * 179.97438 * 10 8 6 12 12 H 1.08006 * 120.00300 * 142.05499 * 11 10 8 13 13 C 1.38952 * 120.00298 * 322.05765 * 11 10 8 14 14 N 1.31408 * 120.00389 * 154.25326 * 13 11 10 15 15 Si 1.86801 * 119.99613 * 334.24918 * 13 11 10 16 16 H 1.48503 * 109.46934 * 95.15593 * 15 13 11 17 17 H 1.48503 * 109.47174 * 215.15662 * 15 13 11 18 18 H 1.48497 * 109.47403 * 335.15322 * 15 13 11 19 19 C 1.46494 * 120.00311 * 359.97438 * 10 8 6 20 20 C 1.54266 * 110.03152 * 242.61106 * 19 10 8 21 21 C 1.54968 * 104.16275 * 217.13465 * 20 19 10 22 22 C 1.54889 * 102.77173 * 37.88942 * 21 20 19 23 23 C 1.53875 * 110.03534 * 125.39489 * 19 10 8 24 24 H 1.09000 * 109.47014 * 175.42193 * 1 2 3 25 25 H 1.09003 * 109.47044 * 295.41267 * 1 2 3 26 26 H 1.08994 * 109.47528 * 55.41383 * 1 2 3 27 27 H 1.09000 * 110.41017 * 82.18797 * 3 2 1 28 28 H 1.08993 * 110.41308 * 319.74290 * 3 2 1 29 29 H 1.09000 * 110.32036 * 264.95733 * 4 3 2 30 30 H 1.08991 * 110.40868 * 142.79850 * 4 3 2 31 31 H 1.09000 * 110.32598 * 241.09970 * 5 4 3 32 32 H 1.09001 * 110.40718 * 118.94224 * 5 4 3 33 33 H 0.97002 * 120.00227 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.02093 * 4.00212 * 19 10 8 35 35 H 1.09004 * 110.48916 * 335.78399 * 20 19 10 36 36 H 1.09006 * 110.48654 * 98.42558 * 20 19 10 37 37 H 1.09001 * 110.71807 * 279.57567 * 21 20 19 38 38 H 1.08994 * 110.92242 * 156.29620 * 21 20 19 39 39 H 1.09002 * 110.47975 * 203.40671 * 22 21 20 40 40 H 1.08993 * 110.48910 * 80.76662 * 22 21 20 41 41 H 1.08994 * 110.03371 * 238.57135 * 23 19 10 42 42 H 1.09000 * 110.03097 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2503 -0.5345 5 6 3.4432 -0.0537 -1.3586 6 6 2.0014 -0.5952 -1.2527 7 1 1.4097 -0.2711 -2.1089 8 6 2.0102 -2.0994 -1.1604 9 8 1.9136 -2.6412 -0.0796 10 7 2.1256 -2.8424 -2.2790 11 6 2.1342 -4.2108 -2.1950 12 1 1.6354 -4.8013 -2.9493 13 6 2.7847 -4.8380 -1.1394 14 7 2.4056 -6.0352 -0.7523 15 14 4.1981 -3.9794 -0.2708 16 1 3.6856 -3.2759 0.9323 17 1 5.2119 -4.9847 0.1379 18 1 4.8207 -2.9952 -1.1921 19 6 2.2419 -2.1879 -3.5844 20 6 1.0382 -2.5638 -4.4730 21 6 1.6424 -2.6956 -5.8940 22 6 3.0195 -3.3502 -5.6211 23 6 3.5012 -2.6872 -4.3142 24 1 -0.3633 -1.0244 -0.0820 25 1 -0.3633 0.4410 0.9283 26 1 -0.3634 0.5833 -0.8460 27 1 2.0078 1.7916 1.0121 28 1 1.4097 2.0212 -0.6601 29 1 4.1482 1.1750 0.2933 30 1 3.6952 2.0995 -1.1695 31 1 4.1483 -0.7691 -0.9353 32 1 3.6941 0.1540 -2.3988 33 1 2.8600 -6.4732 -0.0156 34 1 2.2885 -1.1064 -3.4568 35 1 0.6084 -3.5127 -4.1519 36 1 0.2856 -1.7756 -4.4493 37 1 1.7651 -1.7148 -6.3533 38 1 1.0259 -3.3398 -6.5208 39 1 3.7117 -3.1357 -6.4353 40 1 2.9103 -4.4261 -5.4855 41 1 4.1586 -1.8480 -4.5414 42 1 4.0262 -3.4162 -3.6968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334987660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:51 Heat of formation + Delta-G solvation = -37.360655 kcal Electronic energy + Delta-G solvation = -22336.028909 eV Core-core repulsion = 19315.423812 eV Total energy + Delta-G solvation = -3020.605097 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44073 -39.37691 -38.25737 -35.31033 -33.97756 -33.11652 -30.59308 -29.47649 -28.59001 -26.83564 -26.31372 -23.19287 -21.98268 -21.54683 -21.38883 -20.59194 -18.81738 -17.96729 -17.29099 -16.66402 -16.47158 -15.91628 -15.72959 -15.32355 -15.06030 -14.98345 -14.71952 -14.39322 -14.09662 -13.70672 -13.43938 -13.27391 -12.94378 -12.80301 -12.57074 -12.45191 -12.40371 -12.14346 -12.07362 -11.83267 -11.82168 -11.78843 -11.49375 -11.42955 -11.29193 -10.67357 -10.23691 -9.51429 -9.32263 -8.39964 -6.01869 1.18652 1.32069 1.51549 2.01119 2.48350 2.54823 3.08275 3.23760 3.62760 3.66098 3.79360 3.92618 3.93356 4.11162 4.20752 4.30494 4.40996 4.44225 4.50952 4.61188 4.66364 4.70002 4.74999 4.76712 4.87196 4.92841 4.95059 4.99752 5.08654 5.10677 5.16921 5.23022 5.28994 5.42164 5.51756 5.60827 5.74139 5.80737 5.98180 6.10153 6.86371 7.02554 7.45962 8.02530 8.68889 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.010456 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.497137 B = 2677.187692 C = 3593.832868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.529 5.529 3 C 0.034 3.966 4 C -0.115 4.115 5 C -0.119 4.119 6 C 0.056 3.944 7 H 0.088 0.912 8 C 0.447 3.553 9 O -0.577 6.577 10 N -0.469 5.469 11 C -0.327 4.327 12 H 0.069 0.931 13 C 0.050 3.950 14 N -0.908 5.908 15 Si 0.949 3.051 16 H -0.283 1.283 17 H -0.312 1.312 18 H -0.258 1.258 19 C 0.119 3.881 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.131 4.131 24 H 0.035 0.965 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.268 0.732 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 18.123 -9.186 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.254 5.254 3 C -0.093 4.093 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.056 4.056 7 H 0.105 0.895 8 C 0.238 3.762 9 O -0.461 6.461 10 N -0.191 5.191 11 C -0.454 4.454 12 H 0.087 0.913 13 C -0.154 4.154 14 N -0.546 5.546 15 Si 0.780 3.220 16 H -0.211 1.211 17 H -0.241 1.241 18 H -0.183 1.183 19 C 0.015 3.985 20 C -0.171 4.171 21 C -0.146 4.146 22 C -0.154 4.154 23 C -0.169 4.169 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.046 17.400 -8.085 19.216 hybrid contribution 0.131 -0.520 0.368 0.651 sum 1.177 16.880 -7.718 18.598 Atomic orbital electron populations 1.22405 0.87085 1.00781 1.02131 1.64956 1.09327 1.16609 1.34484 1.23244 0.95457 0.88213 1.02364 1.22316 0.96555 0.96649 0.99724 1.22370 0.93038 0.97747 1.02566 1.22567 0.98625 0.91016 0.93347 0.89472 1.20991 0.80636 0.89925 0.84682 1.90505 1.52647 1.73586 1.29319 1.44004 1.64775 1.04822 1.05493 1.18438 1.34495 0.80823 1.11649 0.91338 1.25763 0.98433 0.94921 0.96295 1.69901 1.39867 1.17670 1.27181 0.85838 0.77871 0.77977 0.80356 1.21064 1.24142 1.18276 1.22182 0.95972 0.97059 0.83258 1.22708 0.97309 1.01139 0.95951 1.22420 0.95460 1.01759 0.94918 1.22260 0.97650 0.98946 0.96526 1.22436 0.97081 1.00630 0.96774 0.94576 0.89862 0.93205 0.89257 0.91275 0.91529 0.87313 0.94486 0.87716 0.92290 0.88041 0.93957 0.90481 0.88780 0.91183 0.89485 0.94057 0.89483 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.44 127.69 1.21 1.95 16 2 N -0.53 -18.22 4.94 -887.03 -4.38 -22.59 16 3 C 0.03 0.80 6.49 86.45 0.56 1.36 16 4 C -0.11 -2.55 7.00 31.49 0.22 -2.33 16 5 C -0.12 -3.54 6.20 31.49 0.20 -3.34 16 6 C 0.06 1.99 1.67 44.31 0.07 2.07 16 7 H 0.09 2.61 6.63 -2.38 -0.02 2.59 16 8 C 0.45 21.78 4.88 87.66 0.43 22.21 16 9 O -0.58 -34.49 11.86 -3.06 -0.04 -34.53 16 10 N -0.47 -22.35 2.18 -609.38 -1.33 -23.68 16 11 C -0.33 -18.89 8.02 84.04 0.67 -18.22 16 12 H 0.07 4.21 7.10 -2.91 -0.02 4.19 16 13 C 0.05 3.10 4.67 84.93 0.40 3.49 16 14 N -0.91 -59.43 13.96 21.66 0.30 -59.13 16 15 Si 0.95 53.29 24.93 68.60 1.71 55.00 16 16 H -0.28 -17.36 6.23 99.48 0.62 -16.74 16 17 H -0.31 -17.14 7.11 99.48 0.71 -16.44 16 18 H -0.26 -13.27 6.88 99.48 0.68 -12.58 16 19 C 0.12 4.14 3.05 45.72 0.14 4.28 16 20 C -0.13 -4.18 6.43 31.70 0.20 -3.98 16 21 C -0.11 -2.59 6.91 31.91 0.22 -2.37 16 22 C -0.12 -3.23 6.83 31.67 0.22 -3.01 16 23 C -0.13 -4.28 6.24 31.32 0.20 -4.08 16 24 H 0.04 1.36 7.96 -2.39 -0.02 1.34 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.05 1.21 7.97 -2.39 -0.02 1.19 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 1.25 7.90 -2.39 -0.02 1.23 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.38 7.52 -2.39 -0.02 1.36 16 32 H 0.10 2.38 7.57 -2.39 -0.02 2.37 16 33 H 0.27 16.75 8.31 -92.71 -0.77 15.98 16 34 H 0.10 2.88 4.85 -2.39 -0.01 2.87 16 35 H 0.04 1.68 6.65 -2.38 -0.02 1.67 16 36 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.04 1.79 7.16 -2.39 -0.02 1.77 16 Total: -1.00 -80.08 316.95 1.87 -78.20 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.87 Total: 8.70 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.73 Total: -1.97 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -5.41 Total: -105.40 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.04 Total: -34.53 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 1.71 Total: 55.00 kcal Total: -80.08 1.87 -78.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334987660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.843 kcal (2) G-P(sol) polarization free energy of solvation -80.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds