Wall clock time and date at job start Mon Mar 30 2020 01:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46765 * 124.35294 * 2 1 4 4 C 1.54661 * 105.38357 * 162.85294 * 3 2 1 5 5 C 1.54631 * 101.68464 * 25.76826 * 4 3 2 6 6 H 1.09000 * 110.48929 * 93.66581 * 5 4 3 7 7 N 1.46902 * 110.59762 * 216.25282 * 5 4 3 8 8 C 1.46844 * 110.99807 * 300.50153 * 7 5 4 9 9 C 1.53037 * 109.52086 * 174.16028 * 8 7 5 10 10 C 1.53123 * 109.27709 * 59.17801 * 9 8 7 11 11 C 1.53001 * 109.51980 * 182.43854 * 10 9 8 12 12 C 1.50704 * 109.47396 * 294.68382 * 11 10 9 13 13 H 1.07997 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00124 * 180.02562 * 12 11 10 15 15 N 1.31524 * 120.00106 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00308 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46854 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47435 * 119.99781 * 16 14 12 19 19 H 1.48497 * 109.47246 * 239.99762 * 16 14 12 20 20 C 1.53106 * 109.16318 * 302.34511 * 10 9 8 21 21 C 1.46844 * 110.99895 * 176.29360 * 7 5 4 22 22 C 1.34425 * 124.34592 * 180.29720 * 2 1 3 23 23 O 1.21280 * 124.94392 * 0.38930 * 22 2 1 24 24 H 1.09002 * 109.47391 * 179.72585 * 1 2 3 25 25 H 1.09001 * 109.46813 * 59.72641 * 1 2 3 26 26 H 1.09004 * 109.47041 * 299.72768 * 1 2 3 27 27 H 1.09002 * 110.24161 * 281.98194 * 3 2 1 28 28 H 1.08992 * 110.24467 * 43.98011 * 3 2 1 29 29 H 1.08990 * 111.19484 * 267.59523 * 4 3 2 30 30 H 1.08999 * 110.85065 * 143.79108 * 4 3 2 31 31 H 1.08994 * 109.46239 * 294.17570 * 8 7 5 32 32 H 1.09004 * 109.46032 * 54.14723 * 8 7 5 33 33 H 1.09001 * 109.50449 * 299.24307 * 9 8 7 34 34 H 1.08999 * 109.53490 * 179.14199 * 9 8 7 35 35 H 1.09005 * 109.51996 * 62.25448 * 10 9 8 36 36 H 1.08993 * 109.47183 * 54.68796 * 11 10 9 37 37 H 1.09004 * 109.46792 * 174.68936 * 11 10 9 38 38 H 0.97000 * 120.00401 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.50445 * 297.71253 * 20 10 9 40 40 H 1.09006 * 109.53810 * 177.61514 * 20 10 9 41 41 H 1.09009 * 109.46499 * 305.85632 * 21 7 5 42 42 H 1.09002 * 109.46446 * 65.82364 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7011 0.7463 0.4396 5 6 3.6898 -0.7380 0.0063 6 1 4.1195 -0.8480 -0.9894 7 7 4.4219 -1.5648 0.9750 8 6 5.8177 -1.1244 1.0940 9 6 6.5080 -1.9090 2.2119 10 6 6.4508 -3.4048 1.8894 11 6 7.0857 -4.1990 3.0327 12 6 8.5545 -3.8725 3.1163 13 1 8.9915 -3.1686 2.4235 14 6 9.3405 -4.4723 4.0771 15 7 8.8085 -5.3299 4.9206 16 14 11.1610 -4.0672 4.1812 17 1 11.5098 -3.0815 3.1266 18 1 11.4648 -3.4926 5.5164 19 1 11.9559 -5.3057 3.9829 20 6 4.9887 -3.8275 1.7228 21 6 4.3425 -2.9872 0.6191 22 6 2.2234 -1.1099 -0.0058 23 8 1.7945 -2.2442 -0.0184 24 1 -0.3634 -1.0276 -0.0049 25 1 -0.3633 0.5181 -0.8875 26 1 -0.3633 0.5096 0.8925 27 1 2.3307 1.6428 -1.0004 28 1 1.8985 1.9382 0.7101 29 1 3.8269 0.8367 1.5185 30 1 4.4759 1.3013 -0.0893 31 1 6.3362 -1.3022 0.1519 32 1 5.8440 -0.0600 1.3276 33 1 5.9984 -1.7208 3.1569 34 1 7.5483 -1.5931 2.2902 35 1 6.9939 -3.5990 0.9644 36 1 6.6006 -3.9341 3.9722 37 1 6.9606 -5.2658 2.8473 38 1 9.3614 -5.7517 5.5969 39 1 4.4552 -3.6695 2.6601 40 1 4.9428 -4.8822 1.4514 41 1 3.2972 -3.2759 0.5077 42 1 4.8679 -3.1563 -0.3209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:00 Heat of formation + Delta-G solvation = -36.609258 kcal Electronic energy + Delta-G solvation = -20901.829395 eV Core-core repulsion = 17881.256881 eV Total energy + Delta-G solvation = -3020.572514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78090 -38.20152 -36.56022 -34.60493 -32.59723 -31.22431 -30.27211 -28.14641 -27.09712 -25.88072 -23.58970 -22.94722 -21.29599 -20.58401 -19.49903 -18.88739 -17.07513 -16.80222 -16.20734 -15.72554 -15.08100 -14.52505 -14.41705 -14.02364 -13.85946 -13.44705 -13.37081 -12.99348 -12.83113 -12.64087 -12.57937 -12.32149 -11.93287 -11.72758 -11.48576 -11.19851 -11.04000 -10.80278 -10.60283 -10.54533 -10.28775 -10.03955 -9.58751 -9.40530 -8.97598 -8.93941 -8.69166 -8.28370 -8.10594 -5.92722 -3.94089 2.44035 2.80799 3.34150 3.41675 3.45080 4.03934 4.13692 4.34288 4.51037 4.77867 4.82861 5.04541 5.09704 5.18482 5.26008 5.42373 5.44191 5.46894 5.52497 5.60358 5.67960 5.81351 5.85756 6.00635 6.06407 6.23453 6.28003 6.50618 6.52384 6.65448 6.76965 6.89333 7.05228 7.17023 7.27762 7.34062 7.42068 7.77285 7.94472 8.08233 8.09037 8.51862 9.12952 9.69066 11.18655 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041829 B = 0.003901 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.227351 B = 7175.337696 C = 7587.014952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.626 5.626 3 C 0.106 3.894 4 C -0.126 4.126 5 C 0.049 3.951 6 H 0.074 0.926 7 N -0.517 5.517 8 C 0.055 3.945 9 C -0.098 4.098 10 C -0.083 4.083 11 C 0.027 3.973 12 C -0.512 4.512 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.109 4.109 21 C 0.038 3.962 22 C 0.530 3.470 23 O -0.519 6.519 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.258 0.742 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 15.208 -11.109 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.362 5.362 3 C -0.018 4.018 4 C -0.164 4.164 5 C -0.063 4.063 6 H 0.092 0.908 7 N -0.243 5.243 8 C -0.073 4.073 9 C -0.136 4.136 10 C -0.101 4.101 11 C -0.010 4.010 12 C -0.551 4.551 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.146 4.146 21 C -0.089 4.089 22 C 0.317 3.683 23 O -0.394 6.394 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.440 14.544 -10.518 23.036 hybrid contribution 1.436 0.160 -0.674 1.594 sum -13.003 14.704 -11.191 22.595 Atomic orbital electron populations 1.21540 0.78098 1.03797 1.01279 1.48076 1.06436 1.07407 1.74240 1.22113 0.90658 0.87378 1.01626 1.22775 0.95985 0.93773 1.03907 1.22259 0.92605 0.94698 0.96717 0.90817 1.62008 1.13700 1.03454 1.45164 1.22277 0.86634 0.99357 0.98984 1.21538 0.99852 0.95367 0.96845 1.21256 0.93570 0.94887 1.00418 1.19124 0.94819 0.94699 0.92330 1.21304 0.94097 1.24634 1.15035 0.92675 1.25029 0.98328 0.95309 0.95915 1.69985 1.35571 1.29014 1.19008 0.86601 0.85873 0.78119 0.77784 1.19819 1.21117 1.21161 1.21657 0.96919 0.97947 0.98113 1.22580 1.03168 0.86379 0.96794 1.20708 0.88885 0.84255 0.74416 1.90616 1.78203 1.20837 1.49718 0.89910 0.92277 0.92056 0.91157 0.90196 0.88465 0.89248 0.95330 0.91354 0.91857 0.90790 0.93110 0.96515 0.96760 0.93193 0.91792 0.92156 0.88008 0.95786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.14 59.85 0.67 1.42 16 2 N -0.63 -6.43 3.33 -180.17 -0.60 -7.03 16 3 C 0.11 0.75 7.36 -3.02 -0.02 0.73 16 4 C -0.13 -1.08 5.46 -25.00 -0.14 -1.22 16 5 C 0.05 0.61 2.65 -67.72 -0.18 0.43 16 6 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 7 N -0.52 -7.97 4.51 -226.70 -1.02 -8.99 16 8 C 0.05 0.83 5.28 -3.84 -0.02 0.81 16 9 C -0.10 -1.86 5.15 -26.65 -0.14 -2.00 16 10 C -0.08 -1.76 2.20 -90.50 -0.20 -1.96 16 11 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 12 C -0.51 -14.49 8.45 -34.44 -0.29 -14.78 16 13 H 0.06 1.51 7.08 -52.49 -0.37 1.14 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 16 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 C -0.11 -2.09 5.38 -26.66 -0.14 -2.23 16 21 C 0.04 0.65 5.26 -3.83 -0.02 0.63 16 22 C 0.53 7.32 7.58 -10.85 -0.08 7.24 16 23 O -0.52 -8.99 14.37 5.56 0.08 -8.91 16 24 H 0.08 0.78 7.53 -51.93 -0.39 0.39 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.92 7.87 -51.93 -0.41 0.51 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.87 6.78 -51.93 -0.35 0.52 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.47 7.05 -51.93 -0.37 1.10 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.85 5.03 -51.92 -0.26 1.59 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -33.10 325.82 -8.91 -42.01 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -7.20 Total: -3.32 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.79 Total: -8.84 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.89 Total: -42.65 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.10 -8.91 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.401 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds