Wall clock time and date at job start Mon Mar 30 2020 01:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46765 * 124.35294 * 2 1 4 4 C 1.54661 * 105.38357 * 162.85294 * 3 2 1 5 5 C 1.54631 * 101.68464 * 25.76826 * 4 3 2 6 6 H 1.09000 * 110.48929 * 93.66581 * 5 4 3 7 7 N 1.46902 * 110.59762 * 216.25282 * 5 4 3 8 8 C 1.46844 * 110.99807 * 300.50153 * 7 5 4 9 9 C 1.53037 * 109.52086 * 174.16028 * 8 7 5 10 10 C 1.53123 * 109.27709 * 59.17801 * 9 8 7 11 11 C 1.53001 * 109.51980 * 182.43854 * 10 9 8 12 12 C 1.50704 * 109.47396 * 294.68382 * 11 10 9 13 13 H 1.07997 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00124 * 180.02562 * 12 11 10 15 15 N 1.31524 * 120.00106 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00308 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46854 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47435 * 119.99781 * 16 14 12 19 19 H 1.48497 * 109.47246 * 239.99762 * 16 14 12 20 20 C 1.53106 * 109.16318 * 302.34511 * 10 9 8 21 21 C 1.46844 * 110.99895 * 176.29360 * 7 5 4 22 22 C 1.34425 * 124.34592 * 180.29720 * 2 1 3 23 23 O 1.21280 * 124.94392 * 0.38930 * 22 2 1 24 24 H 1.09002 * 109.47391 * 179.72585 * 1 2 3 25 25 H 1.09001 * 109.46813 * 59.72641 * 1 2 3 26 26 H 1.09004 * 109.47041 * 299.72768 * 1 2 3 27 27 H 1.09002 * 110.24161 * 281.98194 * 3 2 1 28 28 H 1.08992 * 110.24467 * 43.98011 * 3 2 1 29 29 H 1.08990 * 111.19484 * 267.59523 * 4 3 2 30 30 H 1.08999 * 110.85065 * 143.79108 * 4 3 2 31 31 H 1.08994 * 109.46239 * 294.17570 * 8 7 5 32 32 H 1.09004 * 109.46032 * 54.14723 * 8 7 5 33 33 H 1.09001 * 109.50449 * 299.24307 * 9 8 7 34 34 H 1.08999 * 109.53490 * 179.14199 * 9 8 7 35 35 H 1.09005 * 109.51996 * 62.25448 * 10 9 8 36 36 H 1.08993 * 109.47183 * 54.68796 * 11 10 9 37 37 H 1.09004 * 109.46792 * 174.68936 * 11 10 9 38 38 H 0.97000 * 120.00401 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.50445 * 297.71253 * 20 10 9 40 40 H 1.09006 * 109.53810 * 177.61514 * 20 10 9 41 41 H 1.09009 * 109.46499 * 305.85632 * 21 7 5 42 42 H 1.09002 * 109.46446 * 65.82364 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7011 0.7463 0.4396 5 6 3.6898 -0.7380 0.0063 6 1 4.1195 -0.8480 -0.9894 7 7 4.4219 -1.5648 0.9750 8 6 5.8177 -1.1244 1.0940 9 6 6.5080 -1.9090 2.2119 10 6 6.4508 -3.4048 1.8894 11 6 7.0857 -4.1990 3.0327 12 6 8.5545 -3.8725 3.1163 13 1 8.9915 -3.1686 2.4235 14 6 9.3405 -4.4723 4.0771 15 7 8.8085 -5.3299 4.9206 16 14 11.1610 -4.0672 4.1812 17 1 11.5098 -3.0815 3.1266 18 1 11.4648 -3.4926 5.5164 19 1 11.9559 -5.3057 3.9829 20 6 4.9887 -3.8275 1.7228 21 6 4.3425 -2.9872 0.6191 22 6 2.2234 -1.1099 -0.0058 23 8 1.7945 -2.2442 -0.0184 24 1 -0.3634 -1.0276 -0.0049 25 1 -0.3633 0.5181 -0.8875 26 1 -0.3633 0.5096 0.8925 27 1 2.3307 1.6428 -1.0004 28 1 1.8985 1.9382 0.7101 29 1 3.8269 0.8367 1.5185 30 1 4.4759 1.3013 -0.0893 31 1 6.3362 -1.3022 0.1519 32 1 5.8440 -0.0600 1.3276 33 1 5.9984 -1.7208 3.1569 34 1 7.5483 -1.5931 2.2902 35 1 6.9939 -3.5990 0.9644 36 1 6.6006 -3.9341 3.9722 37 1 6.9606 -5.2658 2.8473 38 1 9.3614 -5.7517 5.5969 39 1 4.4552 -3.6695 2.6601 40 1 4.9428 -4.8822 1.4514 41 1 3.2972 -3.2759 0.5077 42 1 4.8679 -3.1563 -0.3209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:59 Heat of formation + Delta-G solvation = -59.012618 kcal Electronic energy + Delta-G solvation = -20902.800878 eV Core-core repulsion = 17881.256881 eV Total energy + Delta-G solvation = -3021.543997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73150 -39.56646 -37.52299 -36.15917 -34.41636 -32.43093 -31.68783 -29.70634 -28.01059 -27.05597 -25.30412 -24.23321 -22.62507 -21.91595 -20.49550 -20.41306 -18.42334 -17.99139 -17.66960 -16.77436 -16.53047 -15.97242 -15.72719 -15.14161 -14.99263 -14.82178 -14.60217 -14.41911 -14.04682 -13.92846 -13.59219 -13.33959 -13.30522 -13.06093 -12.91933 -12.63708 -12.54296 -12.38742 -12.07811 -12.02745 -12.00328 -11.71364 -11.30768 -10.99750 -10.84574 -10.52075 -10.36310 -9.68629 -9.29643 -8.15820 -6.26129 1.40933 1.41415 1.44978 1.54613 2.06044 2.43175 2.97210 3.17203 3.29669 3.62646 4.00167 4.05473 4.07935 4.11584 4.19607 4.37989 4.40966 4.45437 4.56291 4.65423 4.68748 4.75753 4.76005 4.83956 4.87372 4.96834 5.05413 5.07921 5.15141 5.20570 5.36216 5.40467 5.46858 5.57348 5.63451 5.80633 5.89039 6.02561 6.09222 6.19589 6.30709 6.90238 7.14007 7.42425 8.96641 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041829 B = 0.003901 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.227351 B = 7175.337696 C = 7587.014952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.623 5.623 3 C 0.105 3.895 4 C -0.119 4.119 5 C 0.046 3.954 6 H 0.084 0.916 7 N -0.530 5.530 8 C 0.066 3.934 9 C -0.094 4.094 10 C -0.075 4.075 11 C 0.033 3.967 12 C -0.526 4.526 13 H 0.065 0.935 14 C -0.006 4.006 15 N -0.938 5.938 16 Si 0.965 3.035 17 H -0.258 1.258 18 H -0.279 1.279 19 H -0.282 1.282 20 C -0.103 4.103 21 C 0.050 3.950 22 C 0.514 3.486 23 O -0.569 6.569 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.036 0.964 32 H 0.103 0.897 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.049 0.951 36 H -0.013 1.013 37 H -0.019 1.019 38 H 0.261 0.739 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 18.685 -12.575 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.356 5.356 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.066 4.066 6 H 0.101 0.899 7 N -0.256 5.256 8 C -0.061 4.061 9 C -0.131 4.131 10 C -0.093 4.093 11 C -0.004 4.004 12 C -0.564 4.564 13 H 0.083 0.917 14 C -0.202 4.202 15 N -0.579 5.579 16 Si 0.789 3.211 17 H -0.181 1.181 18 H -0.205 1.205 19 H -0.208 1.208 20 C -0.141 4.141 21 C -0.077 4.077 22 C 0.301 3.699 23 O -0.448 6.448 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.055 0.945 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.005 0.995 37 H -0.001 1.001 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.941 18.088 -11.998 25.797 hybrid contribution 1.186 -0.923 -0.197 1.516 sum -12.755 17.165 -12.196 24.618 Atomic orbital electron populations 1.21709 0.76957 1.03049 1.03461 1.48289 1.07456 1.07591 1.72300 1.22399 0.89128 0.86269 1.03902 1.22848 0.98023 0.90940 1.03862 1.22412 0.91254 0.96420 0.96506 0.89888 1.61910 1.14136 1.02635 1.46882 1.22163 0.86088 1.00381 0.97484 1.21423 0.99842 0.93889 0.97985 1.21103 0.94103 0.96178 0.97946 1.19014 0.94890 0.93480 0.92999 1.21674 0.94888 1.24674 1.15201 0.91718 1.26023 1.03783 0.95015 0.95425 1.70137 1.37702 1.30247 1.19833 0.85400 0.79183 0.78194 0.78283 1.18143 1.20478 1.20787 1.21555 0.95748 0.98323 0.98487 1.22331 1.02170 0.87674 0.95557 1.21097 0.90012 0.84385 0.74373 1.90582 1.79058 1.22890 1.52320 0.92195 0.89623 0.90233 0.88443 0.87845 0.89192 0.86219 0.94547 0.87891 0.93300 0.91607 0.93286 0.99508 1.00075 0.92994 0.93320 0.92801 0.88919 0.95458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 11.14 127.77 1.42 2.66 16 2 N -0.62 -11.24 3.33 -842.52 -2.81 -14.05 16 3 C 0.10 1.02 7.36 86.89 0.64 1.66 16 4 C -0.12 -1.54 5.46 31.72 0.17 -1.37 16 5 C 0.05 1.02 2.65 44.91 0.12 1.14 16 6 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 7 N -0.53 -15.66 4.51 -871.13 -3.92 -19.58 16 8 C 0.07 1.84 5.28 86.33 0.46 2.30 16 9 C -0.09 -3.52 5.15 30.65 0.16 -3.36 16 10 C -0.07 -3.26 2.20 -10.72 -0.02 -3.29 16 11 C 0.03 1.84 4.45 29.85 0.13 1.97 16 12 C -0.53 -30.32 8.45 25.60 0.22 -30.11 16 13 H 0.06 3.53 7.08 -2.91 -0.02 3.51 16 14 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 15 N -0.94 -58.93 13.29 21.45 0.28 -58.64 16 16 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 C -0.10 -4.15 5.38 30.64 0.16 -3.99 16 21 C 0.05 1.74 5.26 86.33 0.45 2.19 16 22 C 0.51 13.66 7.58 87.90 0.67 14.33 16 23 O -0.57 -20.17 14.37 -3.03 -0.04 -20.21 16 24 H 0.06 1.12 7.53 -2.39 -0.02 1.10 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 1.35 7.87 -2.39 -0.02 1.33 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.10 2.21 6.78 -2.39 -0.02 2.19 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 2.56 7.05 -2.39 -0.02 2.54 16 35 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 36 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 41 H 0.09 3.48 5.03 -2.38 -0.01 3.47 16 42 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -75.48 325.82 1.55 -73.92 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.98 Total: 7.37 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.04 Total: -15.72 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -6.45 Total: -92.27 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.04 Total: -20.21 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -75.48 1.55 -73.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.911 kcal (2) G-P(sol) polarization free energy of solvation -75.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds