Wall clock time and date at job start Mon Mar 30 2020 01:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46764 * 124.34845 * 2 1 4 4 C 1.54485 * 105.47193 * 162.98739 * 3 2 1 5 5 C 1.54628 * 101.76188 * 25.41666 * 4 3 2 6 6 H 1.09003 * 110.47879 * 216.52153 * 5 4 3 7 7 N 1.46900 * 110.48574 * 93.88356 * 5 4 3 8 8 C 1.46842 * 110.99904 * 306.01746 * 7 5 4 9 9 C 1.53038 * 109.52395 * 185.84176 * 8 7 5 10 10 C 1.53126 * 109.27878 * 300.82152 * 9 8 7 11 11 C 1.53000 * 109.52226 * 177.55838 * 10 9 8 12 12 C 1.50697 * 109.47194 * 65.31746 * 11 10 9 13 13 H 1.08002 * 119.99839 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00157 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99816 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00056 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46893 * 60.00815 * 16 14 12 18 18 H 1.48504 * 109.46951 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47505 * 300.00524 * 16 14 12 20 20 C 1.53122 * 109.15637 * 57.65152 * 10 9 8 21 21 C 1.46850 * 111.00160 * 70.23309 * 7 5 4 22 22 C 1.34413 * 124.34928 * 180.02562 * 2 1 3 23 23 O 1.21282 * 124.94662 * 0.44012 * 22 2 1 24 24 H 1.08998 * 109.47358 * 89.99717 * 1 2 3 25 25 H 1.08995 * 109.46746 * 209.99637 * 1 2 3 26 26 H 1.09004 * 109.46936 * 329.99588 * 1 2 3 27 27 H 1.08995 * 110.24619 * 43.98478 * 3 2 1 28 28 H 1.09007 * 110.31947 * 282.02539 * 3 2 1 29 29 H 1.08992 * 110.96576 * 267.29706 * 4 3 2 30 30 H 1.09002 * 110.99861 * 143.55007 * 4 3 2 31 31 H 1.08996 * 109.46617 * 305.85751 * 8 7 5 32 32 H 1.09002 * 109.46637 * 65.82825 * 8 7 5 33 33 H 1.08997 * 109.50791 * 180.88115 * 9 8 7 34 34 H 1.08996 * 109.53700 * 60.77791 * 9 8 7 35 35 H 1.08997 * 109.57492 * 297.71698 * 10 9 8 36 36 H 1.09004 * 109.46852 * 185.31933 * 11 10 9 37 37 H 1.08997 * 109.47000 * 305.31721 * 11 10 9 38 38 H 0.97005 * 120.00267 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.49907 * 182.40606 * 20 10 9 40 40 H 1.09003 * 109.50226 * 62.29078 * 20 10 9 41 41 H 1.09002 * 109.45720 * 294.17280 * 21 7 5 42 42 H 1.08997 * 109.46509 * 54.15341 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7487 0.4356 5 6 3.6898 -0.7378 0.0099 6 1 4.2327 -1.3459 0.7336 7 7 4.2688 -0.8929 -1.3312 8 6 3.5967 -0.0167 -2.2991 9 6 4.1239 -0.3090 -3.7057 10 6 5.6363 -0.0716 -3.7383 11 6 6.1789 -0.4206 -5.1256 12 6 5.6107 0.5355 -6.1424 13 1 4.9309 1.3146 -5.8302 14 6 5.9595 0.4165 -7.4710 15 7 6.7877 -0.5318 -7.8510 16 14 5.2546 1.6013 -8.7314 17 1 5.6483 2.9895 -8.3803 18 1 5.7814 1.2626 -10.0780 19 1 3.7736 1.4935 -8.7382 20 6 6.3073 -0.9609 -2.6877 21 6 5.7168 -0.6497 -1.3106 22 6 2.2234 -1.1097 -0.0005 23 8 1.7947 -2.2442 -0.0086 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.8984 1.9383 0.7102 28 1 2.3308 1.6444 -0.9998 29 1 3.8269 0.8447 1.5140 30 1 4.4758 1.3009 -0.0963 31 1 2.5225 -0.1985 -2.2689 32 1 3.7959 1.0246 -2.0458 33 1 3.6363 0.3523 -4.4219 34 1 3.9128 -1.3462 -3.9659 35 1 5.8465 0.9749 -3.5176 36 1 7.2661 -0.3422 -5.1208 37 1 5.8893 -1.4393 -5.3833 38 1 7.0328 -0.6158 -8.7858 39 1 7.3795 -0.7652 -2.6766 40 1 6.1305 -2.0085 -2.9312 41 1 5.9061 0.3946 -1.0619 42 1 6.1824 -1.2913 -0.5626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:02 Heat of formation + Delta-G solvation = -57.415756 kcal Electronic energy + Delta-G solvation = -21235.419549 eV Core-core repulsion = 18213.944797 eV Total energy + Delta-G solvation = -3021.474752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.04908 -39.55982 -37.50617 -36.02826 -34.40647 -32.26016 -31.73038 -29.74436 -28.14619 -27.15942 -25.43225 -24.02420 -23.14376 -21.97562 -20.45324 -20.19402 -18.40749 -18.06758 -17.66882 -16.66339 -16.54902 -16.07538 -15.64170 -15.30004 -15.03446 -14.83439 -14.44013 -14.37620 -14.05629 -13.85852 -13.59810 -13.49247 -13.28538 -13.17688 -12.89528 -12.77153 -12.55778 -12.34149 -12.26159 -12.02277 -11.94203 -11.66618 -11.24873 -11.05157 -10.81696 -10.67114 -10.50363 -9.77329 -9.17594 -8.15672 -6.25453 1.40172 1.41287 1.43125 1.50585 2.04817 2.42812 2.96701 3.17597 3.33573 3.54286 3.93596 3.96134 4.01768 4.11988 4.16165 4.33355 4.39652 4.45212 4.54770 4.59663 4.66170 4.68961 4.70747 4.82053 4.84181 4.92680 5.01529 5.02806 5.08502 5.17068 5.39485 5.41917 5.44295 5.54734 5.58662 5.81707 5.89846 5.99394 6.09339 6.16399 6.30976 6.91028 7.12344 7.42982 8.96202 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.004621 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.065470 B = 6057.230423 C = 6539.481235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.621 5.621 3 C 0.095 3.905 4 C -0.158 4.158 5 C 0.054 3.946 6 H 0.121 0.879 7 N -0.537 5.537 8 C 0.066 3.934 9 C -0.095 4.095 10 C -0.071 4.071 11 C 0.032 3.968 12 C -0.529 4.529 13 H 0.063 0.937 14 C -0.003 4.003 15 N -0.937 5.937 16 Si 0.960 3.040 17 H -0.264 1.264 18 H -0.287 1.287 19 H -0.269 1.269 20 C -0.110 4.110 21 C 0.069 3.931 22 C 0.516 3.484 23 O -0.574 6.574 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.034 0.966 35 H 0.061 0.939 36 H -0.011 1.011 37 H -0.020 1.020 38 H 0.261 0.739 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 7.644 20.248 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.355 5.355 3 C -0.027 4.027 4 C -0.197 4.197 5 C -0.057 4.057 6 H 0.139 0.861 7 N -0.263 5.263 8 C -0.061 4.061 9 C -0.133 4.133 10 C -0.090 4.090 11 C -0.005 4.005 12 C -0.567 4.567 13 H 0.081 0.919 14 C -0.200 4.200 15 N -0.578 5.578 16 Si 0.785 3.215 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.194 1.194 20 C -0.148 4.148 21 C -0.057 4.057 22 C 0.303 3.697 23 O -0.453 6.453 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.007 0.993 37 H -0.001 1.001 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.746 6.513 19.949 22.735 hybrid contribution -0.098 0.683 -1.158 1.348 sum -8.844 7.196 18.791 21.979 Atomic orbital electron populations 1.21695 0.77050 1.04017 1.02260 1.48357 1.07401 1.07535 1.72220 1.22453 0.90291 0.86716 1.03247 1.23280 0.97200 0.94638 1.04554 1.22495 0.92341 0.98428 0.92459 0.86070 1.61862 1.04731 1.55134 1.04576 1.22177 0.97283 0.95132 0.91518 1.21430 0.96113 1.00235 0.95554 1.21070 0.94593 0.98537 0.94776 1.19016 0.94365 0.94646 0.92452 1.21631 1.27072 1.14933 0.93019 0.91886 1.25969 0.95602 0.97385 1.01071 1.70107 1.36084 1.34514 1.17080 0.85573 0.78819 0.79451 0.77651 1.18852 1.21235 1.19424 1.21632 0.99444 0.99340 0.94350 1.22083 0.85643 1.00797 0.97203 1.21143 0.90050 0.84125 0.74362 1.90665 1.79492 1.23344 1.51786 0.92785 0.91980 0.87607 0.87118 0.90717 0.86909 0.88033 0.92254 0.92156 0.92290 0.94707 0.92083 0.99288 1.00114 0.93020 0.91141 0.93601 0.92420 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.96 127.77 1.40 2.85 16 2 N -0.62 -12.36 2.93 -842.89 -2.47 -14.83 16 3 C 0.09 1.24 6.38 86.83 0.55 1.80 16 4 C -0.16 -2.05 6.04 31.65 0.19 -1.86 16 5 C 0.05 1.19 3.15 44.91 0.14 1.34 16 6 H 0.12 2.44 8.07 -2.39 -0.02 2.42 16 7 N -0.54 -14.84 4.66 -871.18 -4.06 -18.90 16 8 C 0.07 1.92 3.75 86.33 0.32 2.24 16 9 C -0.10 -3.65 5.15 30.65 0.16 -3.49 16 10 C -0.07 -2.86 2.20 -10.71 -0.02 -2.88 16 11 C 0.03 1.71 4.45 29.85 0.13 1.85 16 12 C -0.53 -29.79 8.44 25.60 0.22 -29.57 16 13 H 0.06 3.36 7.08 -2.91 -0.02 3.33 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 16 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C -0.11 -3.68 5.38 30.64 0.16 -3.52 16 21 C 0.07 1.73 5.19 86.32 0.45 2.18 16 22 C 0.52 14.22 6.44 87.90 0.57 14.79 16 23 O -0.57 -21.50 17.60 -3.04 -0.05 -21.55 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 1.15 7.93 -2.39 -0.02 1.13 16 26 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 1.06 6.27 -2.38 -0.01 1.04 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 1.26 5.86 -2.39 -0.01 1.24 16 31 H 0.06 1.78 6.36 -2.39 -0.02 1.77 16 32 H 0.06 1.46 5.72 -2.39 -0.01 1.44 16 33 H 0.06 2.38 7.05 -2.39 -0.02 2.36 16 34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 37 H -0.02 -1.17 8.14 -2.39 -0.02 -1.18 16 38 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 39 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.19 6.74 -2.39 -0.02 1.18 16 42 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16 Total: -1.00 -74.93 321.23 1.45 -73.48 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.99 Total: 7.14 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.74 Total: -13.99 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -6.25 Total: -91.51 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.93 1.45 -73.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.069 kcal (2) G-P(sol) polarization free energy of solvation -74.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds