Wall clock time and date at job start Mon Mar 30 2020 01:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48062 * 111.16422 * 2 1 4 4 C 1.53990 * 107.14441 * 145.63016 * 3 2 1 5 5 C 1.54594 * 105.13967 * 358.91559 * 4 3 2 6 6 H 1.09007 * 110.72082 * 96.40212 * 5 4 3 7 7 C 1.50701 * 110.72203 * 219.68322 * 5 4 3 8 8 O 1.21286 * 120.00179 * 16.23426 * 7 5 4 9 9 N 1.34783 * 119.99924 * 196.23313 * 7 5 4 10 10 C 1.37093 * 119.99715 * 182.34518 * 9 7 5 11 11 H 1.08001 * 119.99910 * 132.48507 * 10 9 7 12 12 C 1.38950 * 120.00128 * 312.47941 * 10 9 7 13 13 N 1.31410 * 119.99949 * 168.29131 * 12 10 9 14 14 Si 1.86799 * 119.99847 * 348.29493 * 12 10 9 15 15 H 1.48500 * 109.47109 * 95.04987 * 14 12 10 16 16 H 1.48508 * 109.46753 * 215.04694 * 14 12 10 17 17 H 1.48498 * 109.47283 * 335.04394 * 14 12 10 18 18 C 1.46500 * 119.99644 * 2.34275 * 9 7 5 19 19 C 1.54269 * 110.03097 * 233.92479 * 18 9 7 20 20 C 1.54970 * 104.15908 * 217.13930 * 19 18 9 21 21 C 1.54893 * 102.77415 * 37.88633 * 20 19 18 22 22 C 1.53877 * 110.03170 * 116.70803 * 18 9 7 23 23 C 1.48536 * 110.99930 * 117.38927 * 2 1 3 24 24 H 1.08994 * 109.46808 * 302.60963 * 1 2 3 25 25 H 1.09001 * 109.46440 * 62.61101 * 1 2 3 26 26 H 1.09001 * 109.46900 * 182.60637 * 1 2 3 27 27 H 1.09006 * 109.75741 * 26.31175 * 3 2 1 28 28 H 1.09006 * 109.99172 * 265.07999 * 3 2 1 29 29 H 1.09006 * 110.30845 * 239.99635 * 4 3 2 30 30 H 1.09001 * 110.39107 * 117.87520 * 4 3 2 31 31 H 0.97004 * 119.99903 * 179.97438 * 13 12 10 32 32 H 1.09004 * 110.01678 * 355.31550 * 18 9 7 33 33 H 1.08996 * 110.48394 * 335.78370 * 19 18 9 34 34 H 1.08994 * 110.48698 * 98.43032 * 19 18 9 35 35 H 1.08999 * 110.71945 * 279.57054 * 20 19 18 36 36 H 1.09001 * 110.92054 * 156.29448 * 20 19 18 37 37 H 1.09005 * 110.47946 * 203.40603 * 21 20 19 38 38 H 1.08997 * 110.59798 * 80.82348 * 21 20 19 39 39 H 1.09002 * 110.02976 * 238.56486 * 22 18 9 40 40 H 1.09000 * 110.02912 * 359.94447 * 22 18 9 41 41 H 1.09007 * 110.66437 * 81.84710 * 23 2 1 42 42 H 1.08998 * 110.66842 * 318.88766 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0036 1.3807 0.0000 4 6 3.3001 1.3656 0.8307 5 6 3.4490 -0.0933 1.3201 6 1 4.1134 -0.6546 0.6630 7 6 3.9465 -0.1305 2.7421 8 8 3.8918 0.8668 3.4301 9 7 4.4524 -1.2722 3.2494 10 6 4.8605 -1.3194 4.5574 11 1 4.5531 -2.1392 5.1897 12 6 5.6696 -0.3125 5.0695 13 7 5.8729 -0.2280 6.3650 14 14 6.4684 0.9209 3.9163 15 1 5.6203 2.1366 3.8273 16 1 7.8091 1.2898 4.4378 17 1 6.6111 0.3169 2.5672 18 6 4.5660 -2.4626 2.4031 19 6 3.8630 -3.6591 3.0770 20 6 4.7635 -4.8719 2.7309 21 6 6.1904 -4.2762 2.8225 22 6 6.0451 -2.8548 2.2409 23 6 2.0013 -0.6379 1.2313 24 1 -0.3633 0.5538 0.8656 25 1 -0.3632 0.4728 -0.9125 26 1 -0.3633 -1.0266 0.0467 27 1 1.2791 2.0564 0.4547 28 1 2.2201 1.6966 -1.0206 29 1 3.2130 2.0427 1.6805 30 1 4.1518 1.6454 0.2106 31 1 6.4380 0.4746 6.7225 32 1 4.1215 -2.2700 1.4267 33 1 3.8156 -3.5151 4.1564 34 1 2.8632 -3.7955 2.6651 35 1 4.5581 -5.2292 1.7219 36 1 4.6324 -5.6739 3.4573 37 1 6.8879 -4.8633 2.2251 38 1 6.5216 -4.2319 3.8600 39 1 6.3181 -2.8534 1.1856 40 1 6.6783 -2.1588 2.7911 41 1 2.0041 -1.7234 1.1317 42 1 1.4219 -0.3344 2.1031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336376111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:54 Heat of formation + Delta-G solvation = -22.090179 kcal Electronic energy + Delta-G solvation = -22057.891795 eV Core-core repulsion = 19037.948875 eV Total energy + Delta-G solvation = -3019.942920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87504 -38.11395 -36.86036 -33.59467 -32.24708 -31.53956 -28.95571 -28.16273 -27.11103 -25.89961 -24.49915 -21.63702 -20.83999 -20.26121 -19.90787 -18.71534 -17.26312 -16.26298 -15.80403 -15.27652 -14.99762 -14.45395 -14.41538 -13.94416 -13.54895 -13.33095 -13.25199 -12.86196 -12.72656 -12.44549 -12.00622 -11.55583 -11.43179 -11.40004 -11.19481 -11.00037 -10.81166 -10.79317 -10.60613 -10.53630 -10.48637 -10.09319 -9.93168 -9.89306 -9.73883 -8.63080 -8.49818 -8.30704 -7.51701 -6.14045 -3.98828 3.29863 3.46915 3.66195 3.80426 4.07939 4.49165 4.57858 4.85891 4.96526 5.09005 5.14897 5.19044 5.30020 5.40585 5.44016 5.49609 5.53773 5.66876 5.76772 5.81877 5.83303 5.91672 5.97174 6.07531 6.09526 6.11679 6.14364 6.19292 6.35084 6.36330 6.37778 6.48865 6.52518 6.77700 6.89630 6.92612 6.96784 7.07051 7.88782 8.06580 8.81389 8.93899 9.45628 9.83673 10.90715 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.009360 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.699980 B = 2990.780161 C = 4131.866658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.524 5.524 3 C 0.039 3.961 4 C -0.123 4.123 5 C -0.111 4.111 6 H 0.093 0.907 7 C 0.460 3.540 8 O -0.545 6.545 9 N -0.457 5.457 10 C -0.335 4.335 11 H 0.095 0.905 12 C 0.086 3.914 13 N -0.876 5.876 14 Si 0.920 3.080 15 H -0.260 1.260 16 H -0.314 1.314 17 H -0.282 1.282 18 C 0.126 3.874 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.131 4.131 23 C 0.053 3.947 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.271 0.729 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 -4.366 -12.618 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.248 5.248 3 C -0.089 4.089 4 C -0.162 4.162 5 C -0.134 4.134 6 H 0.111 0.889 7 C 0.249 3.751 8 O -0.428 6.428 9 N -0.178 5.178 10 C -0.462 4.462 11 H 0.113 0.887 12 C -0.121 4.121 13 N -0.511 5.511 14 Si 0.752 3.248 15 H -0.186 1.186 16 H -0.244 1.244 17 H -0.208 1.208 18 C 0.021 3.979 19 C -0.168 4.168 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.170 4.170 23 C -0.075 4.075 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.102 -4.074 -12.566 14.161 hybrid contribution 0.196 0.993 0.187 1.029 sum -4.906 -3.081 -12.379 13.667 Atomic orbital electron populations 1.22497 0.88134 1.01934 1.00673 1.64783 1.07864 1.15309 1.36849 1.22894 0.96174 0.89663 1.00188 1.22395 0.96871 0.96723 1.00170 1.22163 0.97210 0.97687 0.96290 0.88926 1.20203 0.80910 0.85470 0.88491 1.90463 1.57736 1.33786 1.60766 1.43755 1.54792 1.08402 1.10835 1.18700 1.31306 1.12155 0.83993 0.88721 1.25386 0.94238 0.96989 0.95523 1.69701 1.36491 1.33081 1.11849 0.86167 0.75372 0.83315 0.79955 1.18627 1.24445 1.20773 1.21885 0.95135 0.87289 0.93567 1.22689 0.97351 0.93736 1.03025 1.22432 0.95691 0.97344 1.00382 1.22255 0.96270 0.95496 1.01430 1.22449 0.97516 0.97368 0.99633 1.23110 0.93632 0.99575 0.91166 0.95342 0.91517 0.91361 0.93758 0.90560 0.89176 0.91293 0.91967 0.90639 0.89544 0.92580 0.92263 0.92097 0.92730 0.91151 0.92824 0.90285 0.89728 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.42 60.07 0.57 0.76 16 2 N -0.52 -7.43 5.56 -238.57 -1.33 -8.75 16 3 C 0.04 0.54 6.71 -2.67 -0.02 0.53 16 4 C -0.12 -2.09 6.43 -25.38 -0.16 -2.26 16 5 C -0.11 -2.03 2.40 -89.92 -0.22 -2.25 16 6 H 0.09 1.58 6.71 -51.93 -0.35 1.23 16 7 C 0.46 10.77 5.08 -10.98 -0.06 10.72 16 8 O -0.54 -14.94 10.96 5.55 0.06 -14.88 16 9 N -0.46 -10.64 2.04 -106.54 -0.22 -10.85 16 10 C -0.34 -9.19 8.35 -14.94 -0.12 -9.31 16 11 H 0.10 2.73 6.64 -52.49 -0.35 2.38 16 12 C 0.09 2.53 5.04 -17.47 -0.09 2.44 16 13 N -0.88 -26.74 13.96 55.50 0.77 -25.96 16 14 Si 0.92 24.76 24.44 -169.99 -4.15 20.60 16 15 H -0.26 -7.37 6.41 56.52 0.36 -7.01 16 16 H -0.31 -8.36 7.11 56.52 0.40 -7.96 16 17 H -0.28 -7.24 7.02 56.52 0.40 -6.85 16 18 C 0.13 2.32 3.12 -66.81 -0.21 2.11 16 19 C -0.13 -2.16 6.41 -25.03 -0.16 -2.32 16 20 C -0.12 -1.69 6.91 -24.69 -0.17 -1.86 16 21 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 22 C -0.13 -2.33 6.31 -25.62 -0.16 -2.49 16 23 C 0.05 0.85 5.83 -1.90 -0.01 0.84 16 24 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.60 7.70 -51.93 -0.40 0.20 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.76 6.76 -51.93 -0.35 1.41 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.27 7.85 8.31 -40.82 -0.34 7.51 16 32 H 0.08 1.24 4.96 -51.93 -0.26 0.99 16 33 H 0.09 1.68 6.12 -51.93 -0.32 1.37 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.67 7.42 -51.93 -0.39 1.29 16 41 H 0.08 1.24 7.63 -51.93 -0.40 0.84 16 42 H 0.05 0.91 7.90 -51.93 -0.41 0.50 16 LS Contribution 315.86 15.07 4.76 4.76 Total: -1.00 -31.97 315.86 -8.12 -40.08 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.04 Total: 0.08 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.98 Total: -5.08 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.77 Total: -45.57 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.06 Total: -14.88 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -4.15 Total: 20.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.97 -8.12 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336376111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.994 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds