Wall clock time and date at job start Mon Mar 30 2020 01:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48062 * 111.16422 * 2 1 4 4 C 1.53990 * 107.14441 * 145.63016 * 3 2 1 5 5 C 1.54594 * 105.13967 * 358.91559 * 4 3 2 6 6 H 1.09007 * 110.72082 * 96.40212 * 5 4 3 7 7 C 1.50701 * 110.72203 * 219.68322 * 5 4 3 8 8 O 1.21286 * 120.00179 * 16.23426 * 7 5 4 9 9 N 1.34783 * 119.99924 * 196.23313 * 7 5 4 10 10 C 1.37093 * 119.99715 * 182.34518 * 9 7 5 11 11 H 1.08001 * 119.99910 * 132.48507 * 10 9 7 12 12 C 1.38950 * 120.00128 * 312.47941 * 10 9 7 13 13 N 1.31410 * 119.99949 * 168.29131 * 12 10 9 14 14 Si 1.86799 * 119.99847 * 348.29493 * 12 10 9 15 15 H 1.48500 * 109.47109 * 95.04987 * 14 12 10 16 16 H 1.48508 * 109.46753 * 215.04694 * 14 12 10 17 17 H 1.48498 * 109.47283 * 335.04394 * 14 12 10 18 18 C 1.46500 * 119.99644 * 2.34275 * 9 7 5 19 19 C 1.54269 * 110.03097 * 233.92479 * 18 9 7 20 20 C 1.54970 * 104.15908 * 217.13930 * 19 18 9 21 21 C 1.54893 * 102.77415 * 37.88633 * 20 19 18 22 22 C 1.53877 * 110.03170 * 116.70803 * 18 9 7 23 23 C 1.48536 * 110.99930 * 117.38927 * 2 1 3 24 24 H 1.08994 * 109.46808 * 302.60963 * 1 2 3 25 25 H 1.09001 * 109.46440 * 62.61101 * 1 2 3 26 26 H 1.09001 * 109.46900 * 182.60637 * 1 2 3 27 27 H 1.09006 * 109.75741 * 26.31175 * 3 2 1 28 28 H 1.09006 * 109.99172 * 265.07999 * 3 2 1 29 29 H 1.09006 * 110.30845 * 239.99635 * 4 3 2 30 30 H 1.09001 * 110.39107 * 117.87520 * 4 3 2 31 31 H 0.97004 * 119.99903 * 179.97438 * 13 12 10 32 32 H 1.09004 * 110.01678 * 355.31550 * 18 9 7 33 33 H 1.08996 * 110.48394 * 335.78370 * 19 18 9 34 34 H 1.08994 * 110.48698 * 98.43032 * 19 18 9 35 35 H 1.08999 * 110.71945 * 279.57054 * 20 19 18 36 36 H 1.09001 * 110.92054 * 156.29448 * 20 19 18 37 37 H 1.09005 * 110.47946 * 203.40603 * 21 20 19 38 38 H 1.08997 * 110.59798 * 80.82348 * 21 20 19 39 39 H 1.09002 * 110.02976 * 238.56486 * 22 18 9 40 40 H 1.09000 * 110.02912 * 359.94447 * 22 18 9 41 41 H 1.09007 * 110.66437 * 81.84710 * 23 2 1 42 42 H 1.08998 * 110.66842 * 318.88766 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0036 1.3807 0.0000 4 6 3.3001 1.3656 0.8307 5 6 3.4490 -0.0933 1.3201 6 1 4.1134 -0.6546 0.6630 7 6 3.9465 -0.1305 2.7421 8 8 3.8918 0.8668 3.4301 9 7 4.4524 -1.2722 3.2494 10 6 4.8605 -1.3194 4.5574 11 1 4.5531 -2.1392 5.1897 12 6 5.6696 -0.3125 5.0695 13 7 5.8729 -0.2280 6.3650 14 14 6.4684 0.9209 3.9163 15 1 5.6203 2.1366 3.8273 16 1 7.8091 1.2898 4.4378 17 1 6.6111 0.3169 2.5672 18 6 4.5660 -2.4626 2.4031 19 6 3.8630 -3.6591 3.0770 20 6 4.7635 -4.8719 2.7309 21 6 6.1904 -4.2762 2.8225 22 6 6.0451 -2.8548 2.2409 23 6 2.0013 -0.6379 1.2313 24 1 -0.3633 0.5538 0.8656 25 1 -0.3632 0.4728 -0.9125 26 1 -0.3633 -1.0266 0.0467 27 1 1.2791 2.0564 0.4547 28 1 2.2201 1.6966 -1.0206 29 1 3.2130 2.0427 1.6805 30 1 4.1518 1.6454 0.2106 31 1 6.4380 0.4746 6.7225 32 1 4.1215 -2.2700 1.4267 33 1 3.8156 -3.5151 4.1564 34 1 2.8632 -3.7955 2.6651 35 1 4.5581 -5.2292 1.7219 36 1 4.6324 -5.6739 3.4573 37 1 6.8879 -4.8633 2.2251 38 1 6.5216 -4.2319 3.8600 39 1 6.3181 -2.8534 1.1856 40 1 6.6783 -2.1588 2.7911 41 1 2.0041 -1.7234 1.1317 42 1 1.4219 -0.3344 2.1031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336376111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:54 Heat of formation + Delta-G solvation = -44.380796 kcal Electronic energy + Delta-G solvation = -22058.858389 eV Core-core repulsion = 19037.948875 eV Total energy + Delta-G solvation = -3020.909513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52178 -39.43506 -38.44111 -35.45204 -34.06483 -33.07684 -30.28669 -29.48166 -28.62122 -27.25853 -26.12825 -23.23657 -22.03177 -21.55008 -21.41892 -20.47423 -18.95856 -17.96372 -17.26138 -16.95731 -16.46440 -15.96139 -15.83081 -15.33168 -15.18094 -14.95911 -14.81157 -14.39877 -14.09636 -13.85498 -13.72218 -13.35116 -12.75691 -12.56686 -12.48354 -12.44651 -12.41829 -12.19383 -12.18604 -11.89084 -11.78707 -11.77630 -11.68142 -11.29076 -11.27149 -10.82646 -10.39531 -9.51112 -9.46800 -8.39425 -6.21470 1.17980 1.28460 1.45390 1.89892 2.40224 2.60250 3.04302 3.10228 3.57546 3.65297 3.81478 3.86111 3.91999 4.17287 4.24338 4.25199 4.38784 4.52490 4.54581 4.56184 4.66200 4.70649 4.76101 4.76469 4.82908 4.92203 4.94878 5.00719 5.06096 5.09794 5.17649 5.18165 5.29780 5.42417 5.52498 5.62326 5.73459 5.75256 5.94654 6.00445 6.78888 6.92356 7.35180 7.86946 8.68818 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.009360 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.699980 B = 2990.780161 C = 4131.866658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.519 5.519 3 C 0.044 3.956 4 C -0.127 4.127 5 C -0.107 4.107 6 H 0.115 0.885 7 C 0.454 3.546 8 O -0.593 6.593 9 N -0.467 5.467 10 C -0.317 4.317 11 H 0.070 0.930 12 C 0.037 3.963 13 N -0.921 5.921 14 Si 0.967 3.033 15 H -0.286 1.286 16 H -0.314 1.314 17 H -0.263 1.263 18 C 0.118 3.882 19 C -0.130 4.130 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.135 4.135 23 C 0.060 3.940 24 H 0.020 0.980 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.269 0.731 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.105 0.895 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 -6.058 -16.701 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.243 5.243 3 C -0.083 4.083 4 C -0.165 4.165 5 C -0.129 4.129 6 H 0.133 0.867 7 C 0.245 3.755 8 O -0.479 6.479 9 N -0.188 5.188 10 C -0.445 4.445 11 H 0.088 0.912 12 C -0.165 4.165 13 N -0.560 5.560 14 Si 0.799 3.201 15 H -0.214 1.214 16 H -0.244 1.244 17 H -0.187 1.187 18 C 0.015 3.985 19 C -0.168 4.168 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.173 4.173 23 C -0.068 4.068 24 H 0.039 0.961 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.037 -5.811 -16.687 18.673 hybrid contribution 0.372 1.484 1.441 2.102 sum -5.665 -4.326 -15.246 16.830 Atomic orbital electron populations 1.22613 0.86368 1.03041 1.01430 1.64865 1.09470 1.14994 1.35018 1.22907 0.94505 0.89917 1.00994 1.22416 0.99330 0.95101 0.99680 1.22174 0.98905 0.99354 0.92468 0.86662 1.21170 0.79522 0.84390 0.90460 1.90435 1.59203 1.35581 1.62632 1.43971 1.54588 1.10210 1.09999 1.18569 1.29470 1.10408 0.86004 0.91197 1.25983 0.95525 0.98719 0.96297 1.69786 1.38657 1.34397 1.13141 0.85388 0.74107 0.80867 0.79732 1.21409 1.24390 1.18735 1.22258 0.96443 0.85670 0.94089 1.22671 0.99301 0.94406 1.00459 1.22416 0.93396 0.96151 1.02605 1.22251 0.98199 0.94825 1.00110 1.22493 0.95989 0.97648 1.01174 1.23050 0.91632 1.00762 0.91371 0.96089 0.89389 0.90026 0.93659 0.87896 0.92560 0.89845 0.92138 0.87548 0.93521 0.90123 0.88818 0.91156 0.89649 0.94099 0.89531 0.94406 0.87717 0.95305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.42 127.69 1.20 1.47 16 2 N -0.52 -12.72 5.56 -908.70 -5.05 -17.77 16 3 C 0.04 1.11 6.71 86.41 0.58 1.69 16 4 C -0.13 -4.08 6.43 31.47 0.20 -3.88 16 5 C -0.11 -3.67 2.40 -10.34 -0.02 -3.69 16 6 H 0.12 3.45 6.71 -2.38 -0.02 3.44 16 7 C 0.45 21.18 5.08 87.66 0.45 21.62 16 8 O -0.59 -33.45 10.96 -3.05 -0.03 -33.48 16 9 N -0.47 -21.74 2.04 -609.36 -1.24 -22.98 16 10 C -0.32 -18.01 8.35 84.04 0.70 -17.31 16 11 H 0.07 4.27 6.64 -2.91 -0.02 4.25 16 12 C 0.04 2.27 5.04 84.93 0.43 2.69 16 13 N -0.92 -59.14 13.96 21.66 0.30 -58.84 16 14 Si 0.97 52.97 24.44 68.60 1.68 54.64 16 15 H -0.29 -16.79 6.41 99.48 0.64 -16.15 16 16 H -0.31 -16.82 7.11 99.48 0.71 -16.11 16 17 H -0.26 -13.26 7.02 99.48 0.70 -12.56 16 18 C 0.12 4.10 3.12 45.72 0.14 4.24 16 19 C -0.13 -4.06 6.41 31.70 0.20 -3.86 16 20 C -0.11 -2.64 6.91 31.91 0.22 -2.42 16 21 C -0.12 -3.32 6.83 31.67 0.22 -3.10 16 22 C -0.13 -4.48 6.31 31.32 0.20 -4.28 16 23 C 0.06 1.75 5.83 86.65 0.50 2.26 16 24 H 0.02 0.44 8.00 -2.39 -0.02 0.42 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.12 7.70 -2.38 -0.02 1.11 16 28 H 0.10 2.07 8.14 -2.38 -0.02 2.06 16 29 H 0.06 2.21 6.76 -2.38 -0.02 2.19 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.27 16.48 8.31 -92.71 -0.77 15.71 16 32 H 0.11 3.03 4.96 -2.39 -0.01 3.02 16 33 H 0.05 1.83 6.12 -2.39 -0.01 1.82 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.04 1.57 7.42 -2.39 -0.02 1.55 16 41 H 0.10 2.62 7.63 -2.38 -0.02 2.60 16 42 H 0.03 0.97 7.90 -2.39 -0.02 0.95 16 Total: -1.00 -74.24 315.86 1.59 -72.66 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.91 Total: 10.33 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 5.02 Total: -4.56 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -5.99 Total: -99.59 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.03 Total: -33.48 kcal Atomic # 14 Polarization: 52.97 SS G_CDS: 1.68 Total: 54.64 kcal Total: -74.24 1.59 -72.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336376111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.275 kcal (2) G-P(sol) polarization free energy of solvation -74.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds