Wall clock time and date at job start Mon Mar 30 2020 01:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46847 * 110.99804 * 2 1 4 4 C 1.53037 * 109.52059 * 174.16429 * 3 2 1 5 5 C 1.53120 * 109.28145 * 59.17602 * 4 3 2 6 6 C 1.53000 * 109.57497 * 182.41151 * 5 4 3 7 7 H 1.08999 * 110.88649 * 62.14174 * 6 5 4 8 8 C 1.55160 * 111.00309 * 186.06657 * 6 5 4 9 9 C 1.54329 * 102.94021 * 153.57662 * 8 6 5 10 10 N 1.47019 * 107.26931 * 337.80404 * 9 8 6 11 11 C 1.34781 * 125.64396 * 178.90766 * 10 9 8 12 12 O 1.21688 * 119.99866 * 180.02562 * 11 10 9 13 13 C 1.46370 * 120.00147 * 0.04414 * 11 10 9 14 14 H 1.07998 * 120.00314 * 359.97438 * 13 11 10 15 15 C 1.40051 * 120.00191 * 180.02562 * 13 11 10 16 16 N 1.30668 * 119.99759 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00232 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47094 * 89.99181 * 17 15 13 19 19 H 1.48497 * 109.47162 * 209.99600 * 17 15 13 20 20 H 1.48498 * 109.46693 * 329.99486 * 17 15 13 21 21 C 1.47421 * 108.70574 * 358.94241 * 10 9 8 22 22 C 1.53120 * 109.16047 * 302.34544 * 5 4 3 23 23 C 1.46843 * 110.99773 * 235.79083 * 2 1 3 24 24 H 1.08992 * 109.47459 * 184.20879 * 1 2 3 25 25 H 1.09004 * 109.47040 * 304.21029 * 1 2 3 26 26 H 1.09000 * 109.47033 * 64.20982 * 1 2 3 27 27 H 1.09003 * 109.46318 * 294.17246 * 3 2 1 28 28 H 1.08991 * 109.46558 * 54.14817 * 3 2 1 29 29 H 1.09007 * 109.49987 * 299.23504 * 4 3 2 30 30 H 1.09006 * 109.50618 * 179.11823 * 4 3 2 31 31 H 1.09003 * 109.52229 * 62.25405 * 5 4 3 32 32 H 1.09004 * 110.71892 * 271.93674 * 8 6 5 33 33 H 1.08997 * 110.71941 * 35.21025 * 8 6 5 34 34 H 1.09002 * 109.87723 * 218.38998 * 9 8 6 35 35 H 1.09002 * 110.01025 * 97.29806 * 9 8 6 36 36 H 0.97006 * 120.00009 * 180.02562 * 16 15 13 37 37 H 1.09001 * 110.36881 * 265.28985 * 21 10 9 38 38 H 1.09009 * 110.36448 * 142.96822 * 21 10 9 39 39 H 1.08999 * 109.50522 * 297.71747 * 22 5 4 40 40 H 1.08996 * 109.53260 * 177.61447 * 22 5 4 41 41 H 1.09000 * 109.46427 * 305.85253 * 23 2 1 42 42 H 1.08999 * 109.46432 * 65.82661 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 5.6363 0.4448 -0.8422 7 1 5.8917 -0.0867 0.0745 8 6 6.2965 -0.2245 -2.0765 9 6 7.7237 0.3627 -2.0660 10 7 7.6729 1.6196 -1.3050 11 6 8.7222 2.4259 -1.0492 12 8 8.5628 3.4462 -0.4056 13 6 10.0534 2.0744 -1.5460 14 1 10.1950 1.1688 -2.1172 15 6 11.1439 2.9120 -1.2798 16 7 10.9728 4.0074 -0.5883 17 14 12.8430 2.4631 -1.9132 18 1 13.0391 3.0503 -3.2630 19 1 13.8735 2.9965 -0.9867 20 1 12.9667 0.9854 -1.9935 21 6 6.2844 1.8516 -0.8674 22 6 3.5181 -0.8715 -1.0209 23 6 1.9952 -0.7708 -1.1337 24 1 -0.3634 -1.0248 0.0754 25 1 -0.3633 0.5778 0.8499 26 1 -0.3633 0.4471 -0.9253 27 1 1.7325 1.8608 -0.9376 28 1 1.5635 1.9257 0.8329 29 1 3.7814 0.8567 1.0906 30 1 3.9100 2.3512 0.1309 31 1 3.8887 1.0354 -1.9561 32 1 6.3243 -1.3078 -1.9591 33 1 5.7725 0.0520 -2.9914 34 1 8.0507 0.5603 -3.0868 35 1 8.4102 -0.3343 -1.5853 36 1 11.7280 4.5877 -0.4042 37 1 5.7654 2.4957 -1.5773 38 1 6.2695 2.2941 0.1288 39 1 3.7813 -1.3836 -0.0953 40 1 3.9098 -1.4309 -1.8704 41 1 1.5634 -1.7715 -1.1242 42 1 1.7325 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336538843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:12 Heat of formation + Delta-G solvation = -47.275293 kcal Electronic energy + Delta-G solvation = -20722.945483 eV Core-core repulsion = 17701.910455 eV Total energy + Delta-G solvation = -3021.035028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.60321 -38.04569 -35.91222 -33.70446 -32.45683 -31.00266 -30.01430 -28.46652 -26.77881 -25.47329 -23.45661 -22.86868 -21.74381 -20.06698 -19.68479 -19.02268 -16.64454 -16.13281 -15.48879 -15.20098 -15.05416 -14.63420 -14.34300 -14.04471 -13.70055 -13.31973 -13.04613 -12.85435 -12.53359 -12.43734 -12.25932 -11.90593 -11.77304 -11.35570 -11.26129 -11.18264 -11.03850 -10.96471 -10.83257 -10.62631 -10.41817 -10.21268 -10.16346 -9.94152 -9.91452 -8.83617 -8.48841 -7.60742 -7.12306 -6.17630 -4.61974 3.15056 3.21602 3.25308 3.79203 4.10478 4.55837 4.59302 4.66346 4.78085 4.85782 4.95413 5.15663 5.19728 5.24223 5.35611 5.38508 5.45869 5.51753 5.56462 5.63213 5.70024 5.74003 5.82775 5.92070 5.95599 5.97879 6.00879 6.15568 6.21406 6.27298 6.42193 6.48292 6.56730 6.72993 6.75766 6.92537 6.94474 7.44383 7.47255 8.14336 8.46093 9.04054 9.54448 10.60418 10.79619 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.048822 B = 0.003775 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.376365 B = 7415.674630 C = 7891.006106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.074 4.074 6 C -0.096 4.096 7 H 0.079 0.921 8 C -0.126 4.126 9 C 0.121 3.879 10 N -0.646 5.646 11 C 0.571 3.429 12 O -0.578 6.578 13 C -0.539 4.539 14 H 0.069 0.931 15 C 0.086 3.914 16 N -0.769 5.769 17 Si 0.908 3.092 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.265 1.265 21 C 0.122 3.878 22 C -0.110 4.110 23 C 0.056 3.944 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.268 0.732 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.606 -10.185 -2.020 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.152 4.152 5 C -0.093 4.093 6 C -0.115 4.115 7 H 0.098 0.902 8 C -0.164 4.164 9 C -0.004 4.004 10 N -0.386 5.386 11 C 0.377 3.623 12 O -0.460 6.460 13 C -0.576 4.576 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.397 5.397 17 Si 0.733 3.267 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.002 4.002 22 C -0.148 4.148 23 C -0.072 4.072 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -16.363 -9.604 -1.128 19.007 hybrid contribution 0.514 0.112 -1.157 1.271 sum -15.848 -9.492 -2.285 18.614 Atomic orbital electron populations 1.22343 0.87672 1.02000 1.00310 1.61937 1.07199 1.14210 1.43557 1.22121 0.96172 0.88622 1.00253 1.21676 0.93331 1.00927 0.99276 1.21133 0.93945 0.95670 0.98578 1.22394 0.93167 0.97298 0.98624 0.90247 1.22697 0.96240 0.99584 0.97916 1.21569 0.95176 0.87489 0.96168 1.48697 1.07041 1.24345 1.58562 1.18025 0.82830 0.81638 0.79793 1.90603 1.84437 1.26669 1.44339 1.20903 0.91051 1.09064 1.36533 0.91312 1.25739 1.00259 0.93983 0.93350 1.70026 1.31417 1.09443 1.28854 0.86365 0.81729 0.79570 0.79067 1.19736 1.20429 1.18877 1.21808 0.84535 0.94452 0.99384 1.21635 0.93451 0.97141 1.02560 1.22105 0.96098 0.97805 0.91168 0.91539 0.91480 0.95916 0.95047 0.90893 0.90957 0.90888 0.91477 0.91198 0.91507 0.93147 0.92982 0.92104 0.94025 0.91955 0.91049 0.91342 0.91054 0.95110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.59 60.07 0.58 0.78 16 2 N -0.54 -5.67 4.91 -242.96 -1.19 -6.86 16 3 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 4 C -0.11 -1.37 5.13 -26.65 -0.14 -1.51 16 5 C -0.07 -0.89 1.76 -90.50 -0.16 -1.05 16 6 C -0.10 -1.41 2.57 -88.47 -0.23 -1.64 16 7 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 8 C -0.13 -1.79 5.64 -24.89 -0.14 -1.93 16 9 C 0.12 2.28 6.05 -3.06 -0.02 2.26 16 10 N -0.65 -15.35 3.33 -172.17 -0.57 -15.92 16 11 C 0.57 16.91 7.78 -12.99 -0.10 16.81 16 12 O -0.58 -19.38 15.27 5.20 0.08 -19.30 16 13 C -0.54 -15.61 9.06 -35.63 -0.32 -15.93 16 14 H 0.07 1.84 7.16 -52.49 -0.38 1.46 16 15 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 16 N -0.77 -23.45 11.83 55.55 0.66 -22.79 16 17 Si 0.91 20.43 29.56 -169.99 -5.02 15.40 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 21 C 0.12 2.41 5.38 -2.53 -0.01 2.40 16 22 C -0.11 -1.14 5.19 -26.65 -0.14 -1.28 16 23 C 0.06 0.55 5.46 -3.83 -0.02 0.52 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.07 0.93 7.42 -51.93 -0.39 0.55 16 31 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.88 8.02 -51.93 -0.42 0.46 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 37 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 38 H 0.06 1.33 8.00 -51.92 -0.42 0.92 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.65 7.60 -51.93 -0.39 0.26 16 41 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -34.55 329.15 -9.36 -43.91 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.45 Total: -1.78 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.82 Total: 2.37 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -1.11 Total: -45.57 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.08 Total: -19.30 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.55 -9.36 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336538843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.363 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds