Wall clock time and date at job start Mon Mar 30 2020 01:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46847 * 110.99804 * 2 1 4 4 C 1.53037 * 109.52059 * 174.16429 * 3 2 1 5 5 C 1.53120 * 109.28145 * 59.17602 * 4 3 2 6 6 C 1.53000 * 109.57497 * 182.41151 * 5 4 3 7 7 H 1.08999 * 110.88649 * 62.14174 * 6 5 4 8 8 C 1.55160 * 111.00309 * 186.06657 * 6 5 4 9 9 C 1.54329 * 102.94021 * 153.57662 * 8 6 5 10 10 N 1.47019 * 107.26931 * 337.80404 * 9 8 6 11 11 C 1.34781 * 125.64396 * 178.90766 * 10 9 8 12 12 O 1.21688 * 119.99866 * 180.02562 * 11 10 9 13 13 C 1.46370 * 120.00147 * 0.04414 * 11 10 9 14 14 H 1.07998 * 120.00314 * 359.97438 * 13 11 10 15 15 C 1.40051 * 120.00191 * 180.02562 * 13 11 10 16 16 N 1.30668 * 119.99759 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00232 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47094 * 89.99181 * 17 15 13 19 19 H 1.48497 * 109.47162 * 209.99600 * 17 15 13 20 20 H 1.48498 * 109.46693 * 329.99486 * 17 15 13 21 21 C 1.47421 * 108.70574 * 358.94241 * 10 9 8 22 22 C 1.53120 * 109.16047 * 302.34544 * 5 4 3 23 23 C 1.46843 * 110.99773 * 235.79083 * 2 1 3 24 24 H 1.08992 * 109.47459 * 184.20879 * 1 2 3 25 25 H 1.09004 * 109.47040 * 304.21029 * 1 2 3 26 26 H 1.09000 * 109.47033 * 64.20982 * 1 2 3 27 27 H 1.09003 * 109.46318 * 294.17246 * 3 2 1 28 28 H 1.08991 * 109.46558 * 54.14817 * 3 2 1 29 29 H 1.09007 * 109.49987 * 299.23504 * 4 3 2 30 30 H 1.09006 * 109.50618 * 179.11823 * 4 3 2 31 31 H 1.09003 * 109.52229 * 62.25405 * 5 4 3 32 32 H 1.09004 * 110.71892 * 271.93674 * 8 6 5 33 33 H 1.08997 * 110.71941 * 35.21025 * 8 6 5 34 34 H 1.09002 * 109.87723 * 218.38998 * 9 8 6 35 35 H 1.09002 * 110.01025 * 97.29806 * 9 8 6 36 36 H 0.97006 * 120.00009 * 180.02562 * 16 15 13 37 37 H 1.09001 * 110.36881 * 265.28985 * 21 10 9 38 38 H 1.09009 * 110.36448 * 142.96822 * 21 10 9 39 39 H 1.08999 * 109.50522 * 297.71747 * 22 5 4 40 40 H 1.08996 * 109.53260 * 177.61447 * 22 5 4 41 41 H 1.09000 * 109.46427 * 305.85253 * 23 2 1 42 42 H 1.08999 * 109.46432 * 65.82661 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 5.6363 0.4448 -0.8422 7 1 5.8917 -0.0867 0.0745 8 6 6.2965 -0.2245 -2.0765 9 6 7.7237 0.3627 -2.0660 10 7 7.6729 1.6196 -1.3050 11 6 8.7222 2.4259 -1.0492 12 8 8.5628 3.4462 -0.4056 13 6 10.0534 2.0744 -1.5460 14 1 10.1950 1.1688 -2.1172 15 6 11.1439 2.9120 -1.2798 16 7 10.9728 4.0074 -0.5883 17 14 12.8430 2.4631 -1.9132 18 1 13.0391 3.0503 -3.2630 19 1 13.8735 2.9965 -0.9867 20 1 12.9667 0.9854 -1.9935 21 6 6.2844 1.8516 -0.8674 22 6 3.5181 -0.8715 -1.0209 23 6 1.9952 -0.7708 -1.1337 24 1 -0.3634 -1.0248 0.0754 25 1 -0.3633 0.5778 0.8499 26 1 -0.3633 0.4471 -0.9253 27 1 1.7325 1.8608 -0.9376 28 1 1.5635 1.9257 0.8329 29 1 3.7814 0.8567 1.0906 30 1 3.9100 2.3512 0.1309 31 1 3.8887 1.0354 -1.9561 32 1 6.3243 -1.3078 -1.9591 33 1 5.7725 0.0520 -2.9914 34 1 8.0507 0.5603 -3.0868 35 1 8.4102 -0.3343 -1.5853 36 1 11.7280 4.5877 -0.4042 37 1 5.7654 2.4957 -1.5773 38 1 6.2695 2.2941 0.1288 39 1 3.7813 -1.3836 -0.0953 40 1 3.9098 -1.4309 -1.8704 41 1 1.5634 -1.7715 -1.1242 42 1 1.7325 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336538843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:11 Heat of formation + Delta-G solvation = -71.490100 kcal Electronic energy + Delta-G solvation = -20723.995516 eV Core-core repulsion = 17701.910455 eV Total energy + Delta-G solvation = -3022.085061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78489 -39.51106 -37.73126 -34.97703 -34.63719 -31.90505 -31.46672 -29.91371 -28.50271 -26.80377 -24.65193 -23.87654 -23.07612 -21.33192 -20.89107 -20.66205 -18.57288 -17.65519 -17.16361 -16.30660 -16.10738 -15.97852 -15.60776 -15.49290 -14.92688 -14.63873 -14.48630 -14.21673 -13.74069 -13.69966 -13.37569 -13.29158 -13.04604 -12.89488 -12.72873 -12.64911 -12.52458 -12.33384 -12.10403 -12.05445 -11.96582 -11.71144 -11.41807 -11.05083 -10.98145 -10.95990 -9.90748 -9.24497 -9.09430 -8.32338 -6.88418 1.37722 1.39914 1.55527 2.22243 2.42045 2.88234 3.05078 3.53585 3.55992 3.75396 3.81756 4.01195 4.10888 4.28189 4.33263 4.41062 4.47427 4.48919 4.59903 4.64620 4.65493 4.73599 4.81749 4.84233 4.93056 4.96019 5.01020 5.03938 5.06389 5.12190 5.20871 5.25427 5.29075 5.35503 5.39088 5.58628 5.65513 6.02454 6.15689 6.20340 6.41118 6.83328 7.46839 8.42846 8.64264 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.048822 B = 0.003775 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.376365 B = 7415.674630 C = 7891.006106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.061 3.939 4 C -0.115 4.115 5 C -0.066 4.066 6 C -0.078 4.078 7 H 0.076 0.924 8 C -0.109 4.109 9 C 0.111 3.889 10 N -0.656 5.656 11 C 0.548 3.452 12 O -0.636 6.636 13 C -0.565 4.565 14 H 0.087 0.913 15 C 0.026 3.974 16 N -0.823 5.823 17 Si 1.001 2.999 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.248 1.248 21 C 0.118 3.882 22 C -0.104 4.104 23 C 0.056 3.944 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.026 0.974 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.275 0.725 37 H 0.041 0.959 38 H 0.032 0.968 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.088 -12.951 -3.595 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.067 4.067 4 C -0.152 4.152 5 C -0.085 4.085 6 C -0.098 4.098 7 H 0.094 0.906 8 C -0.147 4.147 9 C -0.013 4.013 10 N -0.394 5.394 11 C 0.355 3.645 12 O -0.524 6.524 13 C -0.601 4.601 14 H 0.105 0.895 15 C -0.189 4.189 16 N -0.452 5.452 17 Si 0.819 3.181 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.171 1.171 21 C -0.005 4.005 22 C -0.142 4.142 23 C -0.072 4.072 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.903 -12.429 -2.727 21.157 hybrid contribution 0.585 0.992 -0.637 1.316 sum -16.318 -11.438 -3.364 20.209 Atomic orbital electron populations 1.22388 0.86341 1.02900 1.00667 1.61950 1.08513 1.13683 1.44143 1.22028 0.94867 0.89343 1.00463 1.21635 0.94710 0.99864 0.99038 1.21067 0.91685 0.97311 0.98436 1.22284 0.94827 0.93488 0.99156 0.90551 1.22686 0.92611 1.01261 0.98093 1.21870 0.98683 0.85442 0.95256 1.48564 1.07399 1.25124 1.58267 1.18461 0.84710 0.81711 0.79593 1.90540 1.85791 1.29238 1.46782 1.21400 0.91559 1.10093 1.37093 0.89540 1.27070 1.05657 0.93303 0.92892 1.70203 1.33518 1.11102 1.30418 0.84981 0.74411 0.80086 0.78576 1.18441 1.19592 1.17067 1.21979 0.83191 0.97853 0.97525 1.21597 0.94010 0.95411 1.03143 1.22139 0.95491 0.98559 0.90961 0.90377 0.91143 0.95560 0.95011 0.90507 0.91820 0.92674 0.91293 0.87572 0.89621 0.93141 0.93080 0.91492 0.94115 0.94932 0.91468 0.89543 0.89464 0.94902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.59 127.69 1.22 1.58 16 2 N -0.56 -10.40 4.91 -922.59 -4.53 -14.93 16 3 C 0.06 1.23 5.46 86.33 0.47 1.71 16 4 C -0.11 -2.73 5.13 30.65 0.16 -2.58 16 5 C -0.07 -1.48 1.76 -10.71 -0.02 -1.50 16 6 C -0.08 -2.22 2.57 -9.40 -0.02 -2.25 16 7 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 8 C -0.11 -2.76 5.64 31.79 0.18 -2.58 16 9 C 0.11 4.08 6.05 86.73 0.52 4.60 16 10 N -0.66 -32.03 3.33 -816.86 -2.72 -34.74 16 11 C 0.55 33.97 7.78 86.36 0.67 34.64 16 12 O -0.64 -45.26 15.27 -4.31 -0.07 -45.32 16 13 C -0.57 -33.43 9.06 24.83 0.23 -33.20 16 14 H 0.09 4.61 7.16 -2.91 -0.02 4.59 16 15 C 0.03 1.47 5.50 85.31 0.47 1.94 16 16 N -0.82 -51.99 11.83 21.84 0.26 -51.74 16 17 Si 1.00 41.88 29.56 68.60 2.03 43.91 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 21 C 0.12 4.82 5.38 86.86 0.47 5.29 16 22 C -0.10 -1.82 5.19 30.65 0.16 -1.66 16 23 C 0.06 0.92 5.46 86.33 0.47 1.39 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.95 8.09 -2.38 -0.02 0.93 16 26 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 29 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.05 1.48 7.42 -2.38 -0.02 1.47 16 31 H 0.07 1.56 8.11 -2.39 -0.02 1.54 16 32 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 1.91 8.02 -2.39 -0.02 1.89 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.28 15.65 8.29 -92.70 -0.77 14.89 16 37 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 38 H 0.03 1.49 8.00 -2.38 -0.02 1.47 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.24 7.60 -2.39 -0.02 1.22 16 41 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 42 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -79.62 329.15 0.92 -78.70 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.97 Total: 16.75 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.98 Total: 7.38 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -6.99 Total: -101.41 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.07 Total: -45.32 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -79.62 0.92 -78.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336538843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.208 kcal (2) G-P(sol) polarization free energy of solvation -79.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds