Wall clock time and date at job start Mon Mar 30 2020 01:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 111.00247 * 2 1 4 4 C 1.50700 * 109.47342 * 66.04037 * 3 2 1 5 5 H 1.07999 * 119.99640 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99866 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99896 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99665 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47203 * 60.00422 * 8 6 4 10 10 H 1.48501 * 109.46560 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47141 * 299.99939 * 8 6 4 12 12 C 1.46900 * 111.00274 * 236.04115 * 2 1 3 13 13 C 1.52998 * 109.47132 * 293.95502 * 12 2 1 14 14 C 1.53004 * 109.47617 * 179.97438 * 13 12 2 15 15 C 1.52998 * 109.47617 * 179.97438 * 14 13 12 16 16 C 1.47199 * 109.54591 * 300.18291 * 15 14 13 17 17 N 5.60130 * 104.24425 * 177.57802 * 2 1 3 18 18 C 1.53177 * 109.61441 * 60.39003 * 15 14 13 19 19 C 1.53092 * 109.16443 * 176.87824 * 18 15 14 20 20 O 1.42905 * 109.42428 * 302.41109 * 19 18 15 21 21 C 1.42901 * 114.09770 * 61.14988 * 20 19 18 22 22 C 1.53095 * 109.41489 * 298.84274 * 21 20 19 23 23 H 1.08998 * 109.47171 * 183.95139 * 1 2 3 24 24 H 1.08996 * 109.47228 * 303.96169 * 1 2 3 25 25 H 1.09007 * 109.46466 * 63.96084 * 1 2 3 26 26 H 1.09005 * 109.47186 * 186.04732 * 3 2 1 27 27 H 1.08999 * 109.46760 * 306.04101 * 3 2 1 28 28 H 0.97007 * 119.99758 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47509 * 173.96117 * 12 2 1 30 30 H 1.08995 * 109.47488 * 53.95481 * 12 2 1 31 31 H 1.09007 * 109.47142 * 59.99798 * 13 12 2 32 32 H 1.09004 * 109.47476 * 300.00210 * 13 12 2 33 33 H 1.09007 * 109.46499 * 60.00392 * 14 13 12 34 34 H 1.08995 * 109.47064 * 300.00562 * 14 13 12 35 35 H 1.09004 * 109.51365 * 56.98141 * 18 15 14 36 36 H 1.08998 * 109.53811 * 296.79585 * 18 15 14 37 37 H 1.09002 * 109.48343 * 182.42096 * 19 18 15 38 38 H 1.08999 * 109.47546 * 62.39689 * 19 18 15 39 39 H 1.09002 * 109.48282 * 58.82206 * 21 20 19 40 40 H 1.08997 * 109.48587 * 178.84728 * 21 20 19 41 41 H 1.09001 * 109.52141 * 177.51212 * 22 21 20 42 42 H 1.09000 * 109.52256 * 297.64026 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5283 7 7 2.7120 4.0018 0.6148 8 14 1.5829 4.1870 3.1380 9 1 2.1756 3.4299 4.2697 10 1 2.1140 5.5737 3.1373 11 1 0.1058 4.2232 3.2863 12 6 1.9955 -0.7661 -1.1375 13 6 1.6315 -2.2427 -0.9702 14 6 2.1793 -3.0406 -2.1552 15 6 1.8159 -4.5173 -1.9875 16 6 2.3989 -5.0290 -0.7365 17 7 2.8472 -5.4242 0.2294 18 6 0.2924 -4.6700 -1.9425 19 6 -0.0613 -6.1568 -1.8531 20 8 0.5042 -6.8477 -2.9690 21 6 1.9300 -6.7794 -3.0360 22 6 2.3636 -5.3176 -3.1731 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5741 0.8523 25 1 -0.3632 0.4512 -0.9234 26 1 3.0798 1.3443 -0.1083 27 1 1.5612 1.9272 -0.8310 28 1 2.9860 4.9182 0.7764 29 1 3.0797 -0.6613 -1.1755 30 1 1.5612 -0.3875 -2.0627 31 1 0.5471 -2.3476 -0.9321 32 1 2.0658 -2.6214 -0.0449 33 1 3.2636 -2.9358 -2.1935 34 1 1.7447 -2.6618 -3.0802 35 1 -0.1430 -4.2458 -2.8473 36 1 -0.1005 -4.1490 -1.0694 37 1 -1.1449 -6.2741 -1.8641 38 1 0.3398 -6.5708 -0.9280 39 1 2.3573 -7.2014 -2.1263 40 1 2.2809 -7.3453 -3.8989 41 1 3.4520 -5.2596 -3.1800 42 1 1.9711 -4.9070 -4.1034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337200617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:45 Heat of formation + Delta-G solvation = -33.312744 kcal Electronic energy + Delta-G solvation = -20302.006755 eV Core-core repulsion = 17281.577189 eV Total energy + Delta-G solvation = -3020.429567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46046 -37.39437 -36.53906 -35.01931 -32.77542 -31.70845 -31.26866 -27.69005 -26.84269 -25.21894 -24.08126 -23.18115 -22.10373 -21.11252 -19.98925 -17.20849 -16.45164 -16.33706 -16.12914 -15.31215 -15.16841 -14.99937 -14.62791 -14.26324 -14.05572 -13.85453 -13.45600 -13.09900 -12.73177 -12.60610 -12.23151 -12.09092 -12.01920 -11.88009 -11.72236 -11.66008 -11.21842 -11.01469 -10.88595 -10.85172 -10.73626 -10.53583 -10.46216 -10.20688 -9.87722 -9.73338 -9.19487 -8.43133 -7.23073 -6.02489 -4.03738 2.62768 2.65821 3.33750 3.37550 3.40877 3.50850 3.62952 4.21596 4.37401 4.39778 4.44899 4.56882 4.82414 4.94718 5.03638 5.14390 5.16989 5.26939 5.32352 5.33478 5.37034 5.53356 5.60816 5.65706 5.71654 5.72840 5.82183 5.91477 6.07467 6.16757 6.28904 6.47069 6.51736 6.75518 6.81896 7.29771 7.34450 7.43384 7.80517 8.09777 8.20799 8.56311 9.03707 9.60408 11.08433 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039783 B = 0.003301 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.653530 B = 8480.195484 C = 8518.063540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.543 5.543 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.057 3.943 13 C -0.121 4.121 14 C -0.106 4.106 15 C 0.039 3.961 16 C 0.214 3.786 17 N -0.429 5.429 18 C -0.146 4.146 19 C 0.056 3.944 20 O -0.379 6.379 21 C 0.056 3.944 22 C -0.144 4.144 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.029 0.971 27 H -0.010 1.010 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 -19.031 -10.781 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.267 5.267 3 C 0.068 3.932 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.072 4.072 13 C -0.159 4.159 14 C -0.145 4.145 15 C 0.035 3.965 16 C -0.104 4.104 17 N -0.103 5.103 18 C -0.185 4.185 19 C -0.021 4.021 20 O -0.297 6.297 21 C -0.021 4.021 22 C -0.182 4.182 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.008 0.992 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.188 -19.770 -9.034 21.969 hybrid contribution -0.345 1.387 0.018 1.429 sum -3.532 -18.383 -9.016 20.778 Atomic orbital electron populations 1.22235 0.89108 0.99373 1.00465 1.62082 1.06859 1.17836 1.39956 1.19720 0.95319 0.81615 0.96565 1.21141 1.34867 0.96906 1.01754 0.91942 1.24992 0.95298 0.97352 0.96992 1.69950 1.38368 1.11482 1.34132 0.86557 0.78692 0.78322 0.83824 1.20158 1.21344 1.20273 1.22007 1.00003 0.92512 0.92653 1.21736 1.01185 0.95543 0.97453 1.21695 1.02352 0.90002 1.00493 1.18439 0.95382 0.96744 0.85911 1.28979 0.93749 0.93198 0.94493 1.81232 1.08723 1.09384 1.10988 1.22387 0.92733 0.98067 1.05275 1.22670 0.99452 0.90881 0.89100 1.87949 1.19922 1.74196 1.47638 1.22639 0.81663 0.95595 1.02183 1.22325 1.02271 0.95953 0.97700 0.93645 0.90881 0.97152 0.95330 0.99171 0.92879 0.91577 0.95896 0.91467 0.91551 0.90711 0.89670 0.88596 0.89225 0.88042 0.93367 0.93402 0.88146 0.89763 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.25 16 2 N -0.54 -11.71 4.75 -244.38 -1.16 -12.87 16 3 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 4 C -0.51 -14.44 8.46 -34.44 -0.29 -14.74 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.38 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.06 0.97 4.96 -3.83 -0.02 0.95 16 13 C -0.12 -1.60 4.54 -26.73 -0.12 -1.72 16 14 C -0.11 -1.01 4.26 -26.73 -0.11 -1.12 16 15 C 0.04 0.34 0.51 -157.12 -0.08 0.26 16 16 C 0.21 2.54 10.43 -20.76 -0.22 2.32 16 17 N -0.43 -6.31 18.54 42.15 0.78 -5.53 16 18 C -0.15 -1.13 4.46 -26.59 -0.12 -1.25 16 19 C 0.06 0.45 6.61 37.20 0.25 0.69 16 20 O -0.38 -3.44 10.77 -35.23 -0.38 -3.81 16 21 C 0.06 0.42 6.61 37.21 0.25 0.66 16 22 C -0.14 -0.96 4.90 -26.59 -0.13 -1.09 16 23 H 0.04 0.72 6.47 -51.93 -0.34 0.39 16 24 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 27 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 30 H 0.02 0.38 8.12 -51.93 -0.42 -0.05 16 31 H 0.07 0.82 4.94 -51.92 -0.26 0.57 16 32 H 0.07 1.02 7.23 -51.93 -0.38 0.64 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.73 6.64 -51.93 -0.34 0.39 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.44 7.38 -51.93 -0.38 0.05 16 39 H 0.05 0.40 7.38 -51.93 -0.38 0.02 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -32.44 332.73 -7.19 -39.63 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -6.99 Total: -5.80 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.17 Total: -7.25 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.36 Total: -44.58 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.38 Total: -3.81 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.44 -7.19 -39.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337200617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.318 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds