Wall clock time and date at job start Mon Mar 30 2020 01:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 111.00247 * 2 1 4 4 C 1.50700 * 109.47342 * 66.04037 * 3 2 1 5 5 H 1.07999 * 119.99640 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99866 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99896 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99665 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47203 * 60.00422 * 8 6 4 10 10 H 1.48501 * 109.46560 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47141 * 299.99939 * 8 6 4 12 12 C 1.46900 * 111.00274 * 236.04115 * 2 1 3 13 13 C 1.52998 * 109.47132 * 293.95502 * 12 2 1 14 14 C 1.53004 * 109.47617 * 179.97438 * 13 12 2 15 15 C 1.52998 * 109.47617 * 179.97438 * 14 13 12 16 16 C 1.47199 * 109.54591 * 300.18291 * 15 14 13 17 17 N 5.60130 * 104.24425 * 177.57802 * 2 1 3 18 18 C 1.53177 * 109.61441 * 60.39003 * 15 14 13 19 19 C 1.53092 * 109.16443 * 176.87824 * 18 15 14 20 20 O 1.42905 * 109.42428 * 302.41109 * 19 18 15 21 21 C 1.42901 * 114.09770 * 61.14988 * 20 19 18 22 22 C 1.53095 * 109.41489 * 298.84274 * 21 20 19 23 23 H 1.08998 * 109.47171 * 183.95139 * 1 2 3 24 24 H 1.08996 * 109.47228 * 303.96169 * 1 2 3 25 25 H 1.09007 * 109.46466 * 63.96084 * 1 2 3 26 26 H 1.09005 * 109.47186 * 186.04732 * 3 2 1 27 27 H 1.08999 * 109.46760 * 306.04101 * 3 2 1 28 28 H 0.97007 * 119.99758 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47509 * 173.96117 * 12 2 1 30 30 H 1.08995 * 109.47488 * 53.95481 * 12 2 1 31 31 H 1.09007 * 109.47142 * 59.99798 * 13 12 2 32 32 H 1.09004 * 109.47476 * 300.00210 * 13 12 2 33 33 H 1.09007 * 109.46499 * 60.00392 * 14 13 12 34 34 H 1.08995 * 109.47064 * 300.00562 * 14 13 12 35 35 H 1.09004 * 109.51365 * 56.98141 * 18 15 14 36 36 H 1.08998 * 109.53811 * 296.79585 * 18 15 14 37 37 H 1.09002 * 109.48343 * 182.42096 * 19 18 15 38 38 H 1.08999 * 109.47546 * 62.39689 * 19 18 15 39 39 H 1.09002 * 109.48282 * 58.82206 * 21 20 19 40 40 H 1.08997 * 109.48587 * 178.84728 * 21 20 19 41 41 H 1.09001 * 109.52141 * 177.51212 * 22 21 20 42 42 H 1.09000 * 109.52256 * 297.64026 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5283 7 7 2.7120 4.0018 0.6148 8 14 1.5829 4.1870 3.1380 9 1 2.1756 3.4299 4.2697 10 1 2.1140 5.5737 3.1373 11 1 0.1058 4.2232 3.2863 12 6 1.9955 -0.7661 -1.1375 13 6 1.6315 -2.2427 -0.9702 14 6 2.1793 -3.0406 -2.1552 15 6 1.8159 -4.5173 -1.9875 16 6 2.3989 -5.0290 -0.7365 17 7 2.8472 -5.4242 0.2294 18 6 0.2924 -4.6700 -1.9425 19 6 -0.0613 -6.1568 -1.8531 20 8 0.5042 -6.8477 -2.9690 21 6 1.9300 -6.7794 -3.0360 22 6 2.3636 -5.3176 -3.1731 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5741 0.8523 25 1 -0.3632 0.4512 -0.9234 26 1 3.0798 1.3443 -0.1083 27 1 1.5612 1.9272 -0.8310 28 1 2.9860 4.9182 0.7764 29 1 3.0797 -0.6613 -1.1755 30 1 1.5612 -0.3875 -2.0627 31 1 0.5471 -2.3476 -0.9321 32 1 2.0658 -2.6214 -0.0449 33 1 3.2636 -2.9358 -2.1935 34 1 1.7447 -2.6618 -3.0802 35 1 -0.1430 -4.2458 -2.8473 36 1 -0.1005 -4.1490 -1.0694 37 1 -1.1449 -6.2741 -1.8641 38 1 0.3398 -6.5708 -0.9280 39 1 2.3573 -7.2014 -2.1263 40 1 2.2809 -7.3453 -3.8989 41 1 3.4520 -5.2596 -3.1800 42 1 1.9711 -4.9070 -4.1034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337200617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:44 Heat of formation + Delta-G solvation = -55.269794 kcal Electronic energy + Delta-G solvation = -20302.958884 eV Core-core repulsion = 17281.577189 eV Total energy + Delta-G solvation = -3021.381696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15163 -38.67136 -37.67242 -36.05201 -34.73882 -32.69461 -32.07276 -29.34942 -28.21873 -26.66855 -24.74136 -24.50348 -22.88605 -22.41295 -21.45674 -18.50764 -17.90017 -17.05022 -16.97929 -16.71238 -16.46945 -15.84149 -15.83542 -15.59485 -15.23067 -14.95222 -14.75355 -14.44320 -13.89645 -13.57003 -13.39737 -13.28889 -13.12931 -13.00429 -12.84338 -12.70645 -12.68108 -12.41254 -12.35474 -12.24716 -12.13521 -11.91878 -11.54253 -11.36586 -11.19297 -11.16072 -10.62266 -10.46835 -8.97182 -8.21544 -6.31758 1.39680 1.42979 1.50886 1.71421 1.73833 2.39302 2.81346 2.95856 3.10619 3.29553 3.65090 3.71159 3.76553 4.00072 4.10511 4.25766 4.32445 4.39285 4.49583 4.57218 4.65098 4.68311 4.74496 4.80329 4.81389 4.83498 4.92791 4.98440 5.08629 5.10388 5.14903 5.18470 5.19677 5.30370 5.34199 5.42846 5.64725 6.05909 6.22822 6.35927 6.52860 6.68848 6.84826 7.38039 8.89245 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039783 B = 0.003301 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.653530 B = 8480.195484 C = 8518.063540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.558 5.558 3 C 0.207 3.793 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.968 3.032 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.055 3.945 13 C -0.110 4.110 14 C -0.099 4.099 15 C 0.041 3.959 16 C 0.234 3.766 17 N -0.488 5.488 18 C -0.144 4.144 19 C 0.054 3.946 20 O -0.390 6.390 21 C 0.052 3.948 22 C -0.138 4.138 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.015 0.985 26 H 0.000 1.000 27 H -0.035 1.035 28 H 0.265 0.735 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.268 -19.634 -11.840 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.283 5.283 3 C 0.081 3.919 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.138 4.138 15 C 0.037 3.963 16 C -0.083 4.083 17 N -0.164 5.164 18 C -0.182 4.182 19 C -0.022 4.022 20 O -0.309 6.309 21 C -0.025 4.025 22 C -0.177 4.177 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.018 0.982 27 H -0.017 1.017 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.136 0.864 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.450 -20.399 -10.100 23.194 hybrid contribution 0.049 1.526 0.297 1.556 sum -4.401 -18.873 -9.803 21.718 Atomic orbital electron populations 1.22233 0.87468 1.01378 0.99713 1.61998 1.08463 1.15153 1.42649 1.19363 0.93466 0.84127 0.94940 1.21475 1.34993 0.97553 1.02536 0.92102 1.25913 0.94990 0.98053 1.00693 1.70074 1.39265 1.11910 1.36211 0.85451 0.78942 0.77193 0.79130 1.19633 1.20669 1.19033 1.22115 0.99218 0.94355 0.91577 1.21625 1.02102 0.92920 0.98092 1.21662 1.02492 0.89750 0.99888 1.18686 0.96168 0.96319 0.85118 1.29708 0.92354 0.91730 0.94500 1.81238 1.10760 1.11390 1.12967 1.22426 0.91705 0.97831 1.06255 1.22726 1.00327 0.90990 0.88193 1.87939 1.20683 1.74514 1.47722 1.22766 0.80989 0.96414 1.02283 1.22358 1.02881 0.94999 0.97435 0.89914 0.93098 0.96654 0.98225 1.01729 0.92633 0.92864 0.94646 0.89961 0.94098 0.90711 0.86686 0.86221 0.89633 0.86440 0.95192 0.95159 0.86124 0.88943 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.14 127.69 1.17 2.66 16 2 N -0.56 -24.12 4.75 -927.08 -4.41 -28.53 16 3 C 0.21 11.23 4.72 85.56 0.40 11.63 16 4 C -0.53 -30.48 8.46 25.60 0.22 -30.27 16 5 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 6 C 0.00 0.09 5.46 84.66 0.46 0.55 16 7 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 8 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 C 0.06 1.84 4.96 86.30 0.43 2.27 16 13 C -0.11 -2.68 4.54 30.60 0.14 -2.54 16 14 C -0.10 -1.59 4.26 30.60 0.13 -1.46 16 15 C 0.04 0.60 0.51 -53.87 -0.03 0.58 16 16 C 0.23 5.41 10.43 89.44 0.93 6.34 16 17 N -0.49 -14.65 18.54 20.00 0.37 -14.28 16 18 C -0.14 -1.79 4.46 30.68 0.14 -1.66 16 19 C 0.05 0.77 6.61 72.01 0.48 1.24 16 20 O -0.39 -6.18 10.77 -148.98 -1.60 -7.78 16 21 C 0.05 0.66 6.61 72.01 0.48 1.14 16 22 C -0.14 -1.42 4.90 30.68 0.15 -1.27 16 23 H 0.08 2.44 6.47 -2.39 -0.02 2.42 16 24 H 0.05 2.10 6.76 -2.39 -0.02 2.09 16 25 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.00 -0.02 7.93 -2.38 -0.02 -0.04 16 27 H -0.03 -2.02 8.12 -2.39 -0.02 -2.04 16 28 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 29 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 30 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 31 H 0.08 1.76 4.94 -2.38 -0.01 1.75 16 32 H 0.04 1.22 7.23 -2.38 -0.02 1.20 16 33 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.09 1.16 6.64 -2.39 -0.02 1.14 16 37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.03 0.53 7.38 -2.39 -0.02 0.51 16 39 H 0.03 0.49 7.38 -2.39 -0.02 0.47 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -72.30 332.73 2.75 -69.55 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 0.99 Total: 1.44 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 5.09 Total: -10.77 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -3.75 Total: -99.27 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -1.60 Total: -7.78 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.30 2.75 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337200617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.277 kcal (2) G-P(sol) polarization free energy of solvation -72.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds