Wall clock time and date at job start Mon Mar 30 2020 01:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00230 * 2 1 4 4 C 1.52998 * 109.47217 * 66.04365 * 3 2 1 5 5 C 1.52992 * 109.47081 * 180.02562 * 4 3 2 6 6 H 1.09005 * 110.55510 * 56.42888 * 5 4 3 7 7 C 1.55230 * 110.64455 * 179.37026 * 5 4 3 8 8 C 1.54811 * 101.98684 * 155.43526 * 7 5 4 9 9 C 1.54097 * 104.30884 * 339.26120 * 8 7 5 10 10 O 1.43744 * 107.29139 * 357.90674 * 9 8 7 11 11 C 1.46908 * 110.99914 * 236.04386 * 2 1 3 12 12 C 1.52995 * 109.46691 * 199.82860 * 11 2 1 13 13 H 1.08999 * 109.47570 * 305.14416 * 12 11 2 14 14 C 1.47195 * 109.47512 * 65.15490 * 12 11 2 15 15 N 3.66726 * 123.92231 * 157.43886 * 2 1 3 16 16 C 1.53008 * 109.46756 * 185.15162 * 12 11 2 17 17 C 1.50698 * 109.47199 * 174.99573 * 16 12 11 18 18 H 1.08003 * 119.99992 * 0.02562 * 17 16 12 19 19 C 1.37879 * 120.00084 * 179.97438 * 17 16 12 20 20 N 1.31516 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99926 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46680 * 90.00679 * 21 19 17 23 23 H 1.48503 * 109.46889 * 210.00253 * 21 19 17 24 24 H 1.48491 * 109.47193 * 330.00551 * 21 19 17 25 25 H 1.08997 * 109.46937 * 54.80139 * 1 2 3 26 26 H 1.09002 * 109.47143 * 174.80318 * 1 2 3 27 27 H 1.09000 * 109.47122 * 294.80078 * 1 2 3 28 28 H 1.09008 * 109.46839 * 306.04614 * 3 2 1 29 29 H 1.08993 * 109.47134 * 186.05066 * 3 2 1 30 30 H 1.09000 * 109.46705 * 60.00206 * 4 3 2 31 31 H 1.09004 * 109.47206 * 300.00381 * 4 3 2 32 32 H 1.08999 * 110.89222 * 37.30468 * 7 5 4 33 33 H 1.09005 * 111.02148 * 273.62945 * 7 5 4 34 34 H 1.08996 * 110.48767 * 220.51535 * 8 7 5 35 35 H 1.08999 * 110.48666 * 98.00612 * 8 7 5 36 36 H 1.09004 * 109.87661 * 117.32548 * 9 8 7 37 37 H 1.08992 * 109.88276 * 238.33289 * 9 8 7 38 38 H 1.09000 * 109.46660 * 319.82728 * 11 2 1 39 39 H 1.08999 * 109.46773 * 79.82908 * 11 2 1 40 40 H 1.09001 * 109.46911 * 295.00162 * 16 12 11 41 41 H 1.09001 * 109.46682 * 54.99904 * 16 12 11 42 42 H 0.96995 * 119.99858 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4859 1.3179 6 1 1.8045 4.0394 0.4569 7 6 1.8112 4.2135 2.6388 8 6 2.9196 5.2903 2.7324 9 6 4.0476 4.7552 1.8292 10 8 3.6231 3.4769 1.3273 11 6 1.9955 -0.7661 -1.1376 12 6 3.4450 -1.1662 -0.8558 13 1 4.0287 -0.2760 -0.6213 14 6 3.4849 -2.0941 0.2862 15 7 3.5156 -2.8102 1.1675 16 6 4.0341 -1.8515 -2.0905 17 6 5.4958 -2.1352 -1.8582 18 1 5.9583 -1.8552 -0.9232 19 6 6.2425 -2.7533 -2.8387 20 7 5.6792 -3.0948 -3.9770 21 14 8.0542 -3.1056 -2.5504 22 1 8.2055 -4.4493 -1.9364 23 1 8.7778 -3.0693 -3.8467 24 1 8.6192 -2.0784 -1.6391 25 1 -0.3633 0.5923 -0.8397 26 1 -0.3633 -1.0235 -0.0931 27 1 -0.3633 0.4311 0.9329 28 1 1.5611 1.9273 -0.8310 29 1 3.0797 1.3443 -0.1083 30 1 2.0659 1.5015 2.1491 31 1 0.5472 2.0845 1.4265 32 1 1.8608 3.5296 3.4861 33 1 0.8259 4.6745 2.5699 34 1 3.2687 5.3901 3.7601 35 1 2.5542 6.2473 2.3600 36 1 4.2153 5.4420 0.9995 37 1 4.9642 4.6428 2.4081 38 1 1.3925 -1.6626 -1.2820 39 1 1.9562 -0.1528 -2.0379 40 1 3.5067 -2.7878 -2.2727 41 1 3.9239 -1.1981 -2.9559 42 1 6.2045 -3.5292 -4.6670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342613263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:10 Heat of formation + Delta-G solvation = -35.661959 kcal Electronic energy + Delta-G solvation = -20196.190560 eV Core-core repulsion = 17175.659124 eV Total energy + Delta-G solvation = -3020.531436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.61248 -38.02987 -35.71426 -33.62622 -32.63214 -32.14816 -31.32167 -27.83733 -27.37170 -25.11967 -23.54974 -21.83615 -21.63901 -21.20673 -20.57969 -16.89437 -16.68572 -16.36961 -15.99521 -15.54094 -15.07546 -14.72818 -14.44810 -14.28870 -13.77240 -13.31253 -13.06156 -12.81973 -12.61086 -12.29728 -11.99007 -11.88297 -11.78768 -11.74741 -11.56109 -11.48290 -11.15130 -11.00044 -10.90464 -10.80659 -10.64383 -10.58175 -10.43920 -10.04174 -9.74135 -9.45847 -9.16169 -8.40176 -8.13185 -6.04265 -4.06704 3.34201 3.40325 3.44584 3.73481 3.83133 3.92405 4.02611 4.37788 4.46192 4.57255 4.70660 4.90670 4.98955 5.01249 5.17296 5.19550 5.33998 5.35408 5.40386 5.47902 5.52849 5.53896 5.61469 5.68016 5.74515 5.78242 5.83312 5.89506 5.97776 6.07850 6.18908 6.25601 6.46168 6.60450 6.83933 7.24413 7.26264 7.49117 7.59822 7.91736 8.29961 8.68851 8.98233 9.58440 11.06795 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.004377 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.638081 B = 6394.815472 C = 7290.935358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.054 3.946 4 C -0.109 4.109 5 C 0.077 3.923 6 H 0.068 0.932 7 C -0.150 4.150 8 C -0.157 4.157 9 C 0.046 3.954 10 O -0.367 6.367 11 C 0.063 3.937 12 C 0.011 3.989 13 H 0.101 0.899 14 C 0.260 3.740 15 N -0.484 5.484 16 C 0.031 3.969 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.024 0.976 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.025 0.975 41 H 0.037 0.963 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 17.420 8.357 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.146 4.146 5 C 0.019 3.981 6 H 0.086 0.914 7 C -0.188 4.188 8 C -0.195 4.195 9 C -0.031 4.031 10 O -0.286 6.286 11 C -0.066 4.066 12 C -0.011 4.011 13 H 0.118 0.882 14 C -0.057 4.057 15 N -0.161 5.161 16 C -0.008 4.008 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.400 15.853 9.878 21.379 hybrid contribution 0.658 0.677 -0.945 1.336 sum -9.742 16.530 8.933 21.165 Atomic orbital electron populations 1.22397 0.87922 1.01683 1.00360 1.61995 1.07338 1.13642 1.44085 1.22165 1.01733 0.87675 0.95753 1.21620 1.00349 0.93143 0.99525 1.23207 0.81658 0.96767 0.96481 0.91415 1.23204 0.98902 0.97855 0.98820 1.22934 0.96247 0.99196 1.01095 1.23116 0.97725 0.85788 0.96517 1.88975 1.20079 1.33703 1.85815 1.22242 0.95342 0.97787 0.91237 1.19230 0.95578 0.95303 0.90999 0.88155 1.28854 0.91062 0.92837 0.92929 1.80963 1.10581 1.11701 1.12877 1.19174 0.95783 0.96048 0.89746 1.21160 0.94354 1.39272 1.01374 0.92475 1.24946 0.98529 0.95413 0.95072 1.69941 1.36331 1.41160 1.05778 0.86601 0.85129 0.78883 0.77537 1.20661 1.21143 1.19706 0.95765 0.91596 0.91687 0.94924 0.89349 0.90201 0.90811 0.90295 0.90391 0.90640 0.90899 0.92528 0.89945 0.90445 0.92704 0.95652 0.94515 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.23 60.07 0.55 0.83 16 2 N -0.55 -7.71 4.40 -242.91 -1.07 -8.78 16 3 C 0.05 0.70 4.70 -3.82 -0.02 0.68 16 4 C -0.11 -1.19 4.92 -26.74 -0.13 -1.32 16 5 C 0.08 0.78 3.33 -25.55 -0.09 0.70 16 6 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 7 C -0.15 -1.21 6.61 -24.60 -0.16 -1.37 16 8 C -0.16 -1.17 7.00 -25.20 -0.18 -1.34 16 9 C 0.05 0.43 7.70 37.73 0.29 0.72 16 10 O -0.37 -4.69 10.89 -35.23 -0.38 -5.07 16 11 C 0.06 0.98 4.36 -3.82 -0.02 0.97 16 12 C 0.01 0.21 2.27 -93.41 -0.21 0.00 16 13 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 14 C 0.26 5.71 13.67 -20.76 -0.28 5.43 16 15 N -0.48 -11.46 18.54 42.15 0.78 -10.67 16 16 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 17 C -0.52 -14.34 8.60 -34.44 -0.30 -14.64 16 18 H 0.06 1.57 7.59 -52.48 -0.40 1.17 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 21 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.02 0.25 8.07 -51.93 -0.42 -0.17 16 26 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 27 H 0.06 0.65 6.72 -51.93 -0.35 0.30 16 28 H 0.03 0.39 8.07 -51.92 -0.42 -0.03 16 29 H 0.09 1.31 6.35 -51.93 -0.33 0.98 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.68 6.67 -51.93 -0.35 0.34 16 32 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.21 7.74 -51.93 -0.40 0.80 16 39 H 0.05 0.80 8.00 -51.93 -0.42 0.39 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -31.42 343.63 -7.73 -39.15 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -7.19 Total: -4.21 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.76 Total: -7.07 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.45 Total: -44.72 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.38 Total: -5.07 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.42 -7.73 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342613263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.486 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds