Wall clock time and date at job start Mon Mar 30 2020 01:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00230 * 2 1 4 4 C 1.52998 * 109.47217 * 66.04365 * 3 2 1 5 5 C 1.52992 * 109.47081 * 180.02562 * 4 3 2 6 6 H 1.09005 * 110.55510 * 56.42888 * 5 4 3 7 7 C 1.55230 * 110.64455 * 179.37026 * 5 4 3 8 8 C 1.54811 * 101.98684 * 155.43526 * 7 5 4 9 9 C 1.54097 * 104.30884 * 339.26120 * 8 7 5 10 10 O 1.43744 * 107.29139 * 357.90674 * 9 8 7 11 11 C 1.46908 * 110.99914 * 236.04386 * 2 1 3 12 12 C 1.52995 * 109.46691 * 199.82860 * 11 2 1 13 13 H 1.08999 * 109.47570 * 305.14416 * 12 11 2 14 14 C 1.47195 * 109.47512 * 65.15490 * 12 11 2 15 15 N 3.66726 * 123.92231 * 157.43886 * 2 1 3 16 16 C 1.53008 * 109.46756 * 185.15162 * 12 11 2 17 17 C 1.50698 * 109.47199 * 174.99573 * 16 12 11 18 18 H 1.08003 * 119.99992 * 0.02562 * 17 16 12 19 19 C 1.37879 * 120.00084 * 179.97438 * 17 16 12 20 20 N 1.31516 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99926 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46680 * 90.00679 * 21 19 17 23 23 H 1.48503 * 109.46889 * 210.00253 * 21 19 17 24 24 H 1.48491 * 109.47193 * 330.00551 * 21 19 17 25 25 H 1.08997 * 109.46937 * 54.80139 * 1 2 3 26 26 H 1.09002 * 109.47143 * 174.80318 * 1 2 3 27 27 H 1.09000 * 109.47122 * 294.80078 * 1 2 3 28 28 H 1.09008 * 109.46839 * 306.04614 * 3 2 1 29 29 H 1.08993 * 109.47134 * 186.05066 * 3 2 1 30 30 H 1.09000 * 109.46705 * 60.00206 * 4 3 2 31 31 H 1.09004 * 109.47206 * 300.00381 * 4 3 2 32 32 H 1.08999 * 110.89222 * 37.30468 * 7 5 4 33 33 H 1.09005 * 111.02148 * 273.62945 * 7 5 4 34 34 H 1.08996 * 110.48767 * 220.51535 * 8 7 5 35 35 H 1.08999 * 110.48666 * 98.00612 * 8 7 5 36 36 H 1.09004 * 109.87661 * 117.32548 * 9 8 7 37 37 H 1.08992 * 109.88276 * 238.33289 * 9 8 7 38 38 H 1.09000 * 109.46660 * 319.82728 * 11 2 1 39 39 H 1.08999 * 109.46773 * 79.82908 * 11 2 1 40 40 H 1.09001 * 109.46911 * 295.00162 * 16 12 11 41 41 H 1.09001 * 109.46682 * 54.99904 * 16 12 11 42 42 H 0.96995 * 119.99858 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4859 1.3179 6 1 1.8045 4.0394 0.4569 7 6 1.8112 4.2135 2.6388 8 6 2.9196 5.2903 2.7324 9 6 4.0476 4.7552 1.8292 10 8 3.6231 3.4769 1.3273 11 6 1.9955 -0.7661 -1.1376 12 6 3.4450 -1.1662 -0.8558 13 1 4.0287 -0.2760 -0.6213 14 6 3.4849 -2.0941 0.2862 15 7 3.5156 -2.8102 1.1675 16 6 4.0341 -1.8515 -2.0905 17 6 5.4958 -2.1352 -1.8582 18 1 5.9583 -1.8552 -0.9232 19 6 6.2425 -2.7533 -2.8387 20 7 5.6792 -3.0948 -3.9770 21 14 8.0542 -3.1056 -2.5504 22 1 8.2055 -4.4493 -1.9364 23 1 8.7778 -3.0693 -3.8467 24 1 8.6192 -2.0784 -1.6391 25 1 -0.3633 0.5923 -0.8397 26 1 -0.3633 -1.0235 -0.0931 27 1 -0.3633 0.4311 0.9329 28 1 1.5611 1.9273 -0.8310 29 1 3.0797 1.3443 -0.1083 30 1 2.0659 1.5015 2.1491 31 1 0.5472 2.0845 1.4265 32 1 1.8608 3.5296 3.4861 33 1 0.8259 4.6745 2.5699 34 1 3.2687 5.3901 3.7601 35 1 2.5542 6.2473 2.3600 36 1 4.2153 5.4420 0.9995 37 1 4.9642 4.6428 2.4081 38 1 1.3925 -1.6626 -1.2820 39 1 1.9562 -0.1528 -2.0379 40 1 3.5067 -2.7878 -2.2727 41 1 3.9239 -1.1981 -2.9559 42 1 6.2045 -3.5292 -4.6670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342613263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:09 Heat of formation + Delta-G solvation = -55.091588 kcal Electronic energy + Delta-G solvation = -20197.033092 eV Core-core repulsion = 17175.659124 eV Total energy + Delta-G solvation = -3021.373968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.40163 -39.28401 -37.30337 -35.52284 -33.96530 -33.05474 -32.60765 -29.04974 -28.61091 -26.44539 -24.77121 -23.55401 -22.63847 -21.98542 -21.54893 -18.53631 -18.23408 -17.53525 -16.93131 -16.65311 -16.36588 -15.96911 -15.74118 -15.56116 -14.73459 -14.56466 -14.41036 -14.29041 -13.76361 -13.71358 -13.54270 -13.20826 -13.02195 -12.82025 -12.71546 -12.59079 -12.57014 -12.47241 -12.31924 -12.30328 -11.95768 -11.57488 -11.54763 -11.46549 -11.31130 -11.07427 -10.55579 -10.53179 -9.19452 -8.19635 -6.27781 1.39539 1.41271 1.51219 2.06628 2.14107 2.41558 2.96065 3.01789 3.15576 3.36324 3.73342 3.82409 4.08111 4.10559 4.16085 4.21310 4.32642 4.41570 4.46519 4.57012 4.67755 4.70418 4.78310 4.80886 4.84022 4.89284 4.91032 4.97944 4.98804 5.10774 5.12240 5.23025 5.26359 5.36006 5.45739 5.61291 5.78947 6.08170 6.11122 6.22989 6.25805 6.82476 6.93095 7.40529 8.91411 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.004377 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.638081 B = 6394.815472 C = 7290.935358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.563 5.563 3 C 0.056 3.944 4 C -0.101 4.101 5 C 0.072 3.928 6 H 0.079 0.921 7 C -0.146 4.146 8 C -0.151 4.151 9 C 0.036 3.964 10 O -0.404 6.404 11 C 0.072 3.928 12 C 0.022 3.978 13 H 0.106 0.894 14 C 0.269 3.731 15 N -0.515 5.515 16 C 0.039 3.961 17 C -0.540 4.540 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.923 5.923 21 Si 0.948 3.052 22 H -0.282 1.282 23 H -0.276 1.276 24 H -0.266 1.266 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.003 0.997 41 H 0.034 0.966 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.672 19.050 8.791 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.287 5.287 3 C -0.071 4.071 4 C -0.139 4.139 5 C 0.014 3.986 6 H 0.096 0.904 7 C -0.184 4.184 8 C -0.189 4.189 9 C -0.041 4.041 10 O -0.324 6.324 11 C -0.057 4.057 12 C 0.000 4.000 13 H 0.124 0.876 14 C -0.047 4.047 15 N -0.193 5.193 16 C 0.000 4.000 17 C -0.578 4.578 18 H 0.068 0.932 19 C -0.186 4.186 20 N -0.563 5.563 21 Si 0.773 3.227 22 H -0.208 1.208 23 H -0.201 1.201 24 H -0.191 1.191 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.022 0.978 41 H 0.052 0.948 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.307 17.499 10.322 23.251 hybrid contribution 0.932 0.180 -1.080 1.438 sum -10.375 17.679 9.242 22.486 Atomic orbital electron populations 1.22452 0.85831 1.02102 1.01870 1.61929 1.09261 1.14266 1.43218 1.22148 1.00226 0.87387 0.97388 1.21567 1.01556 0.93282 0.97458 1.23342 0.80644 0.96456 0.98114 0.90361 1.23197 1.00206 0.97726 0.97254 1.22930 0.95205 0.99633 1.01133 1.23299 0.98573 0.84979 0.97245 1.88938 1.21716 1.35448 1.86286 1.22062 0.92583 0.98518 0.92511 1.19163 0.98380 0.94304 0.88201 0.87614 1.29311 0.90046 0.92461 0.92891 1.80953 1.11828 1.12557 1.13933 1.18990 0.94149 0.95307 0.91547 1.21536 0.96207 1.39048 1.01024 0.93160 1.25694 1.02497 0.95415 0.94975 1.70026 1.37816 1.41923 1.06488 0.85705 0.80639 0.78494 0.77839 1.20831 1.20075 1.19088 0.94169 0.91821 0.90133 0.93498 0.91917 0.92445 0.88583 0.91003 0.88179 0.89890 0.89123 0.91852 0.90122 0.90330 0.91287 0.97815 0.94771 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.23 127.69 1.18 1.68 16 2 N -0.56 -15.06 4.40 -922.44 -4.05 -19.11 16 3 C 0.06 1.37 4.70 86.30 0.41 1.77 16 4 C -0.10 -2.07 4.92 30.59 0.15 -1.92 16 5 C 0.07 1.35 3.33 31.36 0.10 1.46 16 6 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 7 C -0.15 -2.03 6.61 31.98 0.21 -1.82 16 8 C -0.15 -1.93 7.00 31.58 0.22 -1.71 16 9 C 0.04 0.64 7.70 72.35 0.56 1.20 16 10 O -0.40 -10.19 10.89 -148.98 -1.62 -11.81 16 11 C 0.07 2.20 4.36 86.30 0.38 2.58 16 12 C 0.02 0.84 2.27 -12.60 -0.03 0.81 16 13 H 0.11 4.06 6.67 -2.39 -0.02 4.05 16 14 C 0.27 11.88 13.67 89.44 1.22 13.11 16 15 N -0.51 -24.52 18.54 20.00 0.37 -24.14 16 16 C 0.04 1.88 4.42 29.85 0.13 2.01 16 17 C -0.54 -29.85 8.60 25.60 0.22 -29.63 16 18 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 19 C 0.01 0.74 5.46 84.65 0.46 1.20 16 20 N -0.92 -53.99 13.29 21.45 0.28 -53.71 16 21 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H 0.04 0.70 8.07 -2.39 -0.02 0.68 16 26 H 0.06 1.32 7.85 -2.39 -0.02 1.30 16 27 H 0.08 1.38 6.72 -2.39 -0.02 1.37 16 28 H 0.05 1.01 8.07 -2.38 -0.02 0.99 16 29 H 0.06 1.85 6.35 -2.39 -0.02 1.83 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.10 1.51 6.67 -2.38 -0.02 1.49 16 32 H 0.07 1.10 8.06 -2.39 -0.02 1.08 16 33 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 2.37 7.74 -2.39 -0.02 2.35 16 39 H 0.07 1.91 8.00 -2.39 -0.02 1.89 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -67.17 343.63 3.19 -63.97 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.98 Total: 7.39 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 5.21 Total: -9.24 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -3.40 Total: -96.96 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -1.62 Total: -11.81 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.17 3.19 -63.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342613263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.882 kcal (2) G-P(sol) polarization free energy of solvation -67.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds