Wall clock time and date at job start Mon Mar 30 2020 01:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.82094 * 305.56102 * 5 4 3 7 7 C 1.54382 * 109.82890 * 184.58976 * 5 4 3 8 8 C 1.55306 * 102.25054 * 219.12649 * 7 5 4 9 9 C 1.54952 * 100.94076 * 34.13266 * 8 7 5 10 10 O 1.43236 * 109.83262 * 66.45061 * 5 4 3 11 11 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 12 12 C 1.52997 * 109.47053 * 66.04702 * 11 2 1 13 13 H 1.09001 * 109.47321 * 305.00109 * 12 11 2 14 14 C 1.47195 * 109.47232 * 64.99837 * 12 11 2 15 15 N 3.66492 * 112.02760 * 199.41170 * 2 1 3 16 16 C 1.53005 * 109.47055 * 184.99985 * 12 11 2 17 17 C 1.50700 * 109.47137 * 175.00200 * 16 12 11 18 18 H 1.08001 * 119.99708 * 359.97438 * 17 16 12 19 19 C 1.37874 * 119.99904 * 179.97438 * 17 16 12 20 20 N 1.31513 * 120.00006 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99996 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46953 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47186 * 119.99962 * 21 19 17 24 24 H 1.48499 * 109.47098 * 240.00327 * 21 19 17 25 25 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 26 26 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 28 28 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 29 29 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 30 30 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 31 31 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 32 32 H 1.09007 * 110.84836 * 337.31345 * 7 5 4 33 33 H 1.08993 * 110.85153 * 100.93582 * 7 5 4 34 34 H 1.08991 * 111.12862 * 276.21426 * 8 7 5 35 35 H 1.09000 * 111.15841 * 152.06102 * 8 7 5 36 36 H 1.08996 * 110.30845 * 204.64133 * 9 8 7 37 37 H 1.09003 * 110.39238 * 82.51478 * 9 8 7 38 38 H 1.09002 * 109.46783 * 186.04686 * 11 2 1 39 39 H 1.09005 * 109.46676 * 306.04728 * 11 2 1 40 40 H 1.09003 * 109.46800 * 294.99850 * 16 12 11 41 41 H 1.08996 * 109.46850 * 54.99654 * 16 12 11 42 42 H 0.97000 * 120.00297 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 1 1.8274 4.0173 -0.4347 7 6 1.7201 4.2233 -2.5941 8 6 2.9826 5.0444 -2.9736 9 6 4.1077 4.0783 -2.5244 10 8 3.6123 3.4560 -1.3283 11 6 1.9955 -0.7660 1.1376 12 6 1.6315 -2.2426 0.9703 13 1 0.5533 -2.3389 0.8432 14 6 2.3156 -2.7854 -0.2146 15 7 2.8436 -3.2043 -1.1291 16 6 2.0701 -3.0199 2.2131 17 6 1.6032 -4.4486 2.1027 18 1 1.0489 -4.7698 1.2333 19 6 1.8839 -5.3454 3.1116 20 7 2.5585 -4.9540 4.1705 21 14 1.3047 -7.1161 2.9751 22 1 0.5709 -7.2997 1.6971 23 1 2.4787 -8.0248 3.0074 24 1 0.4033 -7.4311 4.1125 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5611 1.9274 0.8310 29 1 3.0797 1.3444 0.1083 30 1 2.0658 1.5016 -2.1491 31 1 0.5471 2.0845 -1.4264 32 1 1.4671 3.5142 -3.3824 33 1 0.8789 4.8823 -2.3792 34 1 3.0238 5.9809 -2.4177 35 1 3.0260 5.2255 -4.0476 36 1 5.0208 4.6340 -2.3113 37 1 4.2929 3.3276 -3.2927 38 1 3.0798 -0.6611 1.1756 39 1 1.5611 -0.3872 2.0628 40 1 3.1571 -2.9979 2.2906 41 1 1.6331 -2.5624 3.1007 42 1 2.7563 -5.5850 4.8801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342613265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:12 Heat of formation + Delta-G solvation = -35.380545 kcal Electronic energy + Delta-G solvation = -19940.148044 eV Core-core repulsion = 16919.628810 eV Total energy + Delta-G solvation = -3020.519233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.77125 -38.05700 -35.74574 -33.70055 -32.70092 -32.26542 -31.13474 -27.88625 -27.29129 -25.56710 -23.33452 -22.05266 -21.64021 -21.14546 -20.49452 -17.19111 -16.67133 -16.54834 -16.22639 -15.30678 -15.18587 -14.58875 -14.37852 -14.22192 -13.81536 -13.54360 -13.07319 -12.88266 -12.67950 -12.29386 -12.04959 -12.03563 -11.86285 -11.59638 -11.55772 -11.37632 -11.20311 -11.11795 -11.03943 -10.92743 -10.68741 -10.61556 -10.43736 -10.08227 -9.68908 -9.47825 -9.16527 -8.43516 -8.11753 -6.07046 -4.09936 3.30137 3.38287 3.43079 3.61031 3.79428 3.89997 4.03981 4.20976 4.43483 4.54571 4.62315 4.90597 4.92270 4.99595 5.09206 5.13739 5.31096 5.37265 5.39841 5.44666 5.46381 5.52503 5.57488 5.62137 5.70540 5.73622 5.79842 5.85933 6.03709 6.10665 6.17104 6.23560 6.45427 6.55646 6.86515 7.25136 7.27196 7.46623 7.57348 7.88629 8.26515 8.65332 8.95178 9.55369 11.03956 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041278 B = 0.003171 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.166992 B = 8826.564032 C = 8854.323222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.547 5.547 3 C 0.061 3.939 4 C -0.125 4.125 5 C 0.081 3.919 6 H 0.078 0.922 7 C -0.151 4.151 8 C -0.157 4.157 9 C 0.049 3.951 10 O -0.375 6.375 11 C 0.063 3.937 12 C 0.010 3.990 13 H 0.100 0.900 14 C 0.258 3.742 15 N -0.481 5.481 16 C 0.031 3.969 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.026 0.974 41 H 0.037 0.963 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 21.173 -9.751 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.271 5.271 3 C -0.067 4.067 4 C -0.163 4.163 5 C 0.023 3.977 6 H 0.096 0.904 7 C -0.189 4.189 8 C -0.195 4.195 9 C -0.027 4.027 10 O -0.295 6.295 11 C -0.066 4.066 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.059 4.059 15 N -0.158 5.158 16 C -0.008 4.008 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.281 20.154 -11.235 23.186 hybrid contribution -0.902 -0.415 0.943 1.370 sum -3.183 19.739 -10.292 22.487 Atomic orbital electron populations 1.22493 0.87807 1.02585 1.00161 1.62014 1.07795 1.13270 1.43983 1.22035 1.00869 0.87962 0.95867 1.21987 1.00660 0.94422 0.99243 1.22770 0.81266 0.95862 0.97812 0.90381 1.23181 0.98467 0.99252 0.97982 1.23264 0.94882 0.99137 1.02224 1.23361 0.97039 0.94576 0.87732 1.88472 1.19670 1.80570 1.40750 1.22235 1.00798 0.92234 0.91322 1.19260 0.99161 0.92637 0.90180 0.88240 1.28846 0.92693 0.91360 0.93027 1.80969 1.10659 1.11064 1.13139 1.19179 0.97746 0.94372 0.89489 1.21186 1.35812 0.94504 1.04746 0.92464 1.24957 0.94979 0.98828 0.95268 1.69950 1.39564 1.35141 1.08402 0.86540 0.78578 0.84901 0.78092 1.19674 1.20967 1.20884 0.91773 0.90769 0.95526 0.95074 0.90184 0.90666 0.90997 0.90241 0.90119 0.90482 0.90061 0.89918 0.92221 0.90283 0.92924 0.95551 0.94490 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.13 60.07 0.55 0.76 16 2 N -0.55 -7.81 4.46 -242.91 -1.08 -8.90 16 3 C 0.06 0.75 4.87 -3.83 -0.02 0.74 16 4 C -0.13 -1.33 4.71 -26.73 -0.13 -1.45 16 5 C 0.08 0.77 3.52 -26.01 -0.09 0.67 16 6 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 7 C -0.15 -1.08 6.54 -24.78 -0.16 -1.25 16 8 C -0.16 -1.04 7.16 -24.48 -0.18 -1.21 16 9 C 0.05 0.43 7.78 38.19 0.30 0.72 16 10 O -0.38 -4.35 10.63 -35.23 -0.37 -4.72 16 11 C 0.06 1.00 4.32 -3.82 -0.02 0.98 16 12 C 0.01 0.18 2.14 -93.41 -0.20 -0.02 16 13 H 0.10 1.79 6.26 -51.93 -0.33 1.46 16 14 C 0.26 5.60 13.67 -20.76 -0.28 5.32 16 15 N -0.48 -11.32 18.54 42.15 0.78 -10.54 16 16 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 17 C -0.52 -14.19 8.60 -34.44 -0.30 -14.49 16 18 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 26 H 0.07 0.96 6.21 -51.93 -0.32 0.63 16 27 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.03 0.36 8.12 -51.92 -0.42 -0.06 16 29 H 0.08 1.11 7.67 -51.93 -0.40 0.71 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.67 6.55 -51.93 -0.34 0.33 16 32 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 39 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -31.23 342.59 -7.69 -38.92 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -7.15 Total: -4.35 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.74 Total: -6.99 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.43 Total: -44.54 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.37 Total: -4.72 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.23 -7.69 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342613265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.538 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds