Wall clock time and date at job start Mon Mar 30 2020 01:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.82094 * 305.56102 * 5 4 3 7 7 C 1.54382 * 109.82890 * 184.58976 * 5 4 3 8 8 C 1.55306 * 102.25054 * 219.12649 * 7 5 4 9 9 C 1.54952 * 100.94076 * 34.13266 * 8 7 5 10 10 O 1.43236 * 109.83262 * 66.45061 * 5 4 3 11 11 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 12 12 C 1.52997 * 109.47053 * 66.04702 * 11 2 1 13 13 H 1.09001 * 109.47321 * 305.00109 * 12 11 2 14 14 C 1.47195 * 109.47232 * 64.99837 * 12 11 2 15 15 N 3.66492 * 112.02760 * 199.41170 * 2 1 3 16 16 C 1.53005 * 109.47055 * 184.99985 * 12 11 2 17 17 C 1.50700 * 109.47137 * 175.00200 * 16 12 11 18 18 H 1.08001 * 119.99708 * 359.97438 * 17 16 12 19 19 C 1.37874 * 119.99904 * 179.97438 * 17 16 12 20 20 N 1.31513 * 120.00006 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99996 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46953 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47186 * 119.99962 * 21 19 17 24 24 H 1.48499 * 109.47098 * 240.00327 * 21 19 17 25 25 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 26 26 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 28 28 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 29 29 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 30 30 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 31 31 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 32 32 H 1.09007 * 110.84836 * 337.31345 * 7 5 4 33 33 H 1.08993 * 110.85153 * 100.93582 * 7 5 4 34 34 H 1.08991 * 111.12862 * 276.21426 * 8 7 5 35 35 H 1.09000 * 111.15841 * 152.06102 * 8 7 5 36 36 H 1.08996 * 110.30845 * 204.64133 * 9 8 7 37 37 H 1.09003 * 110.39238 * 82.51478 * 9 8 7 38 38 H 1.09002 * 109.46783 * 186.04686 * 11 2 1 39 39 H 1.09005 * 109.46676 * 306.04728 * 11 2 1 40 40 H 1.09003 * 109.46800 * 294.99850 * 16 12 11 41 41 H 1.08996 * 109.46850 * 54.99654 * 16 12 11 42 42 H 0.97000 * 120.00297 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 1 1.8274 4.0173 -0.4347 7 6 1.7201 4.2233 -2.5941 8 6 2.9826 5.0444 -2.9736 9 6 4.1077 4.0783 -2.5244 10 8 3.6123 3.4560 -1.3283 11 6 1.9955 -0.7660 1.1376 12 6 1.6315 -2.2426 0.9703 13 1 0.5533 -2.3389 0.8432 14 6 2.3156 -2.7854 -0.2146 15 7 2.8436 -3.2043 -1.1291 16 6 2.0701 -3.0199 2.2131 17 6 1.6032 -4.4486 2.1027 18 1 1.0489 -4.7698 1.2333 19 6 1.8839 -5.3454 3.1116 20 7 2.5585 -4.9540 4.1705 21 14 1.3047 -7.1161 2.9751 22 1 0.5709 -7.2997 1.6971 23 1 2.4787 -8.0248 3.0074 24 1 0.4033 -7.4311 4.1125 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5611 1.9274 0.8310 29 1 3.0797 1.3444 0.1083 30 1 2.0658 1.5016 -2.1491 31 1 0.5471 2.0845 -1.4264 32 1 1.4671 3.5142 -3.3824 33 1 0.8789 4.8823 -2.3792 34 1 3.0238 5.9809 -2.4177 35 1 3.0260 5.2255 -4.0476 36 1 5.0208 4.6340 -2.3113 37 1 4.2929 3.3276 -3.2927 38 1 3.0798 -0.6611 1.1756 39 1 1.5611 -0.3872 2.0628 40 1 3.1571 -2.9979 2.2906 41 1 1.6331 -2.5624 3.1007 42 1 2.7563 -5.5850 4.8801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342613265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:12 Heat of formation + Delta-G solvation = -54.623888 kcal Electronic energy + Delta-G solvation = -19940.982498 eV Core-core repulsion = 16919.628810 eV Total energy + Delta-G solvation = -3021.353687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.50085 -39.32895 -37.30520 -35.54409 -34.07299 -33.06835 -32.42519 -29.06477 -28.49779 -26.90718 -24.61972 -23.48269 -22.71279 -22.03279 -21.38579 -18.52271 -18.24444 -17.87043 -17.12470 -16.66577 -16.19330 -16.14861 -15.65018 -15.20673 -14.76293 -14.62777 -14.37901 -14.18101 -14.05413 -13.76103 -13.56152 -13.20930 -13.04660 -12.88452 -12.70567 -12.59926 -12.52441 -12.46755 -12.35607 -12.17588 -11.87872 -11.68972 -11.65136 -11.59162 -11.32997 -11.02973 -10.56061 -10.42537 -9.20016 -8.19745 -6.28275 1.39076 1.41918 1.52699 2.05363 2.12974 2.41330 2.90948 3.01366 3.15510 3.34389 3.64076 3.90266 4.00387 4.05780 4.18153 4.24682 4.32764 4.33036 4.40476 4.61183 4.65953 4.69982 4.76734 4.79893 4.83287 4.89450 4.92713 4.96168 4.99284 5.01073 5.14376 5.18275 5.27777 5.40526 5.45888 5.60667 5.78720 6.08056 6.17624 6.22312 6.24132 6.82516 6.92418 7.40361 8.91531 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041278 B = 0.003171 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.166992 B = 8826.564032 C = 8854.323222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.562 5.562 3 C 0.064 3.936 4 C -0.117 4.117 5 C 0.077 3.923 6 H 0.085 0.915 7 C -0.147 4.147 8 C -0.150 4.150 9 C 0.039 3.961 10 O -0.406 6.406 11 C 0.072 3.928 12 C 0.021 3.979 13 H 0.119 0.881 14 C 0.267 3.733 15 N -0.515 5.515 16 C 0.038 3.962 17 C -0.538 4.538 18 H 0.054 0.946 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.950 3.050 22 H -0.269 1.269 23 H -0.285 1.285 24 H -0.271 1.271 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.069 0.931 40 H -0.001 1.001 41 H 0.035 0.965 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 22.372 -10.330 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.286 5.286 3 C -0.064 4.064 4 C -0.155 4.155 5 C 0.019 3.981 6 H 0.103 0.897 7 C -0.185 4.185 8 C -0.187 4.187 9 C -0.037 4.037 10 O -0.326 6.326 11 C -0.057 4.057 12 C -0.001 4.001 13 H 0.136 0.864 14 C -0.049 4.049 15 N -0.192 5.192 16 C -0.001 4.001 17 C -0.576 4.576 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.776 3.224 22 H -0.193 1.193 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.018 0.982 41 H 0.053 0.947 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.876 21.365 -11.825 24.725 hybrid contribution -0.381 -0.767 1.120 1.410 sum -4.257 20.599 -10.705 23.602 Atomic orbital electron populations 1.22559 0.86278 1.02583 1.01737 1.61970 1.09284 1.14249 1.43090 1.22021 0.99651 0.87230 0.97493 1.21931 1.01597 0.94764 0.97205 1.22879 0.80504 0.95322 0.99412 0.89682 1.23182 0.99256 0.99346 0.96695 1.23255 0.93463 0.98734 1.03293 1.23535 0.98254 0.95003 0.86918 1.88441 1.20987 1.81128 1.42075 1.22043 1.00468 0.90297 0.92853 1.19220 0.99783 0.94043 0.87048 0.86351 1.29342 0.92002 0.90512 0.93062 1.80962 1.11754 1.12168 1.14350 1.18996 0.95878 0.93707 0.91515 1.21567 1.35415 0.96208 1.04408 0.92767 1.25736 0.95256 1.02731 0.95139 1.70043 1.40719 1.36501 1.09130 0.85613 0.78129 0.80242 0.78411 1.19326 1.21126 1.19673 0.90009 0.91541 0.94115 0.93765 0.92254 0.92704 0.89244 0.90315 0.88221 0.89647 0.88491 0.89171 0.92796 0.91307 0.91336 0.98232 0.94663 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.13 127.69 1.17 1.52 16 2 N -0.56 -15.30 4.46 -922.41 -4.12 -19.42 16 3 C 0.06 1.51 4.87 86.30 0.42 1.93 16 4 C -0.12 -2.32 4.71 30.59 0.14 -2.17 16 5 C 0.08 1.34 3.52 31.06 0.11 1.44 16 6 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 7 C -0.15 -1.77 6.54 31.86 0.21 -1.57 16 8 C -0.15 -1.67 7.16 32.05 0.23 -1.44 16 9 C 0.04 0.64 7.78 72.65 0.57 1.21 16 10 O -0.41 -9.26 10.63 -148.98 -1.58 -10.84 16 11 C 0.07 2.24 4.32 86.30 0.37 2.62 16 12 C 0.02 0.79 2.14 -12.60 -0.03 0.76 16 13 H 0.12 4.08 6.26 -2.39 -0.01 4.06 16 14 C 0.27 11.59 13.67 89.44 1.22 12.82 16 15 N -0.51 -24.31 18.54 20.00 0.37 -23.94 16 16 C 0.04 1.80 4.42 29.85 0.13 1.93 16 17 C -0.54 -29.07 8.60 25.60 0.22 -28.85 16 18 H 0.05 2.91 7.59 -2.91 -0.02 2.88 16 19 C 0.01 0.57 5.46 84.65 0.46 1.03 16 20 N -0.92 -53.80 13.29 21.45 0.28 -53.52 16 21 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H 0.08 1.51 6.47 -2.39 -0.02 1.49 16 26 H 0.07 1.56 6.21 -2.38 -0.01 1.55 16 27 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.94 8.12 -2.38 -0.02 0.92 16 29 H 0.06 1.65 7.67 -2.39 -0.02 1.63 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.43 6.55 -2.39 -0.02 1.42 16 32 H 0.08 0.97 7.85 -2.38 -0.02 0.95 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 2.26 7.93 -2.39 -0.02 2.24 16 39 H 0.07 1.91 8.12 -2.38 -0.02 1.89 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -66.57 342.59 3.18 -63.38 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 0.98 Total: 7.11 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 5.22 Total: -8.77 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -3.46 Total: -96.88 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.58 Total: -10.84 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.57 3.18 -63.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342613265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.759 kcal (2) G-P(sol) polarization free energy of solvation -66.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds