Wall clock time and date at job start Mon Mar 30 2020 01:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00305 * 2 1 4 4 C 1.53001 * 109.46927 * 66.04169 * 3 2 1 5 5 C 1.53004 * 109.47218 * 180.02562 * 4 3 2 6 6 H 1.09008 * 110.54595 * 56.43198 * 5 4 3 7 7 C 1.55227 * 110.64294 * 179.36948 * 5 4 3 8 8 C 1.54813 * 101.98357 * 155.43882 * 7 5 4 9 9 C 1.54098 * 104.30472 * 339.26359 * 8 7 5 10 10 O 1.43744 * 107.29564 * 357.90152 * 9 8 7 11 11 C 1.46904 * 111.00121 * 236.04934 * 2 1 3 12 12 C 1.53008 * 109.46714 * 293.95245 * 11 2 1 13 13 H 1.09001 * 109.47177 * 55.00503 * 12 11 2 14 14 C 1.47201 * 109.47175 * 295.00039 * 12 11 2 15 15 N 3.66500 * 112.02679 * 160.59049 * 2 1 3 16 16 C 1.53001 * 109.46578 * 175.00225 * 12 11 2 17 17 C 1.50708 * 109.46721 * 185.00219 * 16 12 11 18 18 H 1.07997 * 119.99781 * 359.97438 * 17 16 12 19 19 C 1.37880 * 119.99730 * 180.02562 * 17 16 12 20 20 N 1.31504 * 119.99999 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99694 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46934 * 59.99901 * 21 19 17 23 23 H 1.48493 * 109.47149 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47005 * 300.00109 * 21 19 17 25 25 H 1.09002 * 109.46895 * 60.00159 * 1 2 3 26 26 H 1.09002 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47218 * 300.00348 * 1 2 3 28 28 H 1.09010 * 109.47013 * 306.04827 * 3 2 1 29 29 H 1.08991 * 109.47499 * 186.04731 * 3 2 1 30 30 H 1.08996 * 109.46842 * 60.00539 * 4 3 2 31 31 H 1.09000 * 109.47537 * 300.00754 * 4 3 2 32 32 H 1.08999 * 110.89081 * 37.30614 * 7 5 4 33 33 H 1.09003 * 111.02102 * 273.63128 * 7 5 4 34 34 H 1.09002 * 110.48794 * 220.51904 * 8 7 5 35 35 H 1.09002 * 110.48657 * 98.00326 * 8 7 5 36 36 H 1.08999 * 109.88182 * 117.33024 * 9 8 7 37 37 H 1.09008 * 109.87958 * 238.32904 * 9 8 7 38 38 H 1.08997 * 109.47219 * 53.95514 * 11 2 1 39 39 H 1.09002 * 109.47001 * 173.95809 * 11 2 1 40 40 H 1.08998 * 109.47128 * 304.99385 * 16 12 11 41 41 H 1.08999 * 109.47343 * 65.00168 * 16 12 11 42 42 H 0.97007 * 120.00207 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1793 3.4860 1.3180 6 1 1.8044 4.0394 0.4570 7 6 1.8111 4.2135 2.6390 8 6 2.9194 5.2903 2.7326 9 6 4.0474 4.7553 1.8292 10 8 3.6229 3.4769 1.3274 11 6 1.9955 -0.7659 -1.1377 12 6 1.6315 -2.2426 -0.9704 13 1 0.5532 -2.3389 -0.8434 14 6 2.3156 -2.7855 0.2146 15 7 2.8435 -3.2044 1.1290 16 6 2.0701 -3.0198 -2.2132 17 6 1.6031 -4.4485 -2.1029 18 1 1.0494 -4.7700 -1.2331 19 6 1.8838 -5.3453 -3.1118 20 7 2.5585 -4.9539 -4.1705 21 14 1.3057 -7.1163 -2.9747 22 1 -0.1753 -7.1468 -2.8693 23 1 1.7312 -7.8707 -4.1809 24 1 1.9010 -7.7391 -1.7652 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.5611 1.9274 -0.8310 29 1 3.0797 1.3444 -0.1083 30 1 2.0658 1.5015 2.1491 31 1 0.5472 2.0844 1.4265 32 1 1.8606 3.5295 3.4862 33 1 0.8257 4.6744 2.5700 34 1 3.2685 5.3901 3.7603 35 1 2.5539 6.2473 2.3602 36 1 4.2151 5.4421 0.9996 37 1 4.9641 4.6429 2.4082 38 1 1.5612 -0.3872 -2.0628 39 1 3.0798 -0.6611 -1.1756 40 1 1.6331 -2.5624 -3.1008 41 1 3.1571 -2.9978 -2.2907 42 1 2.7557 -5.5848 -4.8806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342613267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:15 Heat of formation + Delta-G solvation = -35.091675 kcal Electronic energy + Delta-G solvation = -19888.247512 eV Core-core repulsion = 16867.740806 eV Total energy + Delta-G solvation = -3020.506707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69515 -38.07828 -35.75958 -33.71011 -32.71512 -32.25498 -31.15027 -27.87324 -27.29649 -25.57124 -23.37331 -21.91919 -21.59225 -21.24425 -20.60761 -16.92340 -16.64794 -16.54951 -16.10179 -15.63997 -15.15414 -14.70206 -14.50253 -14.34485 -13.82325 -13.30732 -13.14138 -12.82720 -12.69709 -12.26716 -12.05141 -11.92739 -11.85490 -11.67463 -11.61467 -11.36985 -11.18257 -11.04010 -10.98510 -10.91895 -10.71115 -10.59547 -10.46681 -10.08231 -9.84792 -9.48334 -9.19187 -8.42631 -8.12917 -6.06626 -4.09695 3.33099 3.37267 3.41145 3.64216 3.79293 3.90300 4.00140 4.30578 4.43443 4.51172 4.62666 4.82682 4.91851 4.98907 5.10252 5.16179 5.31266 5.31722 5.39352 5.42119 5.47788 5.52613 5.57696 5.62487 5.69906 5.74593 5.77873 5.85036 6.02687 6.08900 6.13388 6.21119 6.45083 6.55517 6.73758 7.23632 7.25976 7.46380 7.57424 7.88582 8.26673 8.65819 8.94899 9.55466 11.04295 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041820 B = 0.003129 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.374648 B = 8944.973527 C = 8992.651814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.546 5.546 3 C 0.059 3.941 4 C -0.109 4.109 5 C 0.077 3.923 6 H 0.068 0.932 7 C -0.150 4.150 8 C -0.157 4.157 9 C 0.046 3.954 10 O -0.370 6.370 11 C 0.063 3.937 12 C 0.010 3.990 13 H 0.100 0.900 14 C 0.257 3.743 15 N -0.481 5.481 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.026 0.974 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 21.654 8.814 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.270 5.270 3 C -0.069 4.069 4 C -0.147 4.147 5 C 0.019 3.981 6 H 0.086 0.914 7 C -0.188 4.188 8 C -0.195 4.195 9 C -0.031 4.031 10 O -0.289 6.289 11 C -0.066 4.066 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.060 4.060 15 N -0.158 5.158 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.448 20.554 10.383 23.158 hybrid contribution -0.866 -0.229 -1.047 1.378 sum -3.314 20.325 9.336 22.611 Atomic orbital electron populations 1.22501 0.87762 1.02647 1.00179 1.62008 1.07824 1.13160 1.44027 1.22049 1.00926 0.88075 0.95820 1.21640 1.00599 0.93004 0.99469 1.23220 0.81425 0.96870 0.96563 0.91392 1.23205 0.98974 0.97838 0.98779 1.22936 0.96216 0.99251 1.01092 1.23114 0.97755 0.85744 0.96513 1.88946 1.20324 1.33782 1.85844 1.22238 1.00811 0.92252 0.91286 1.19261 0.99166 0.92610 0.90191 0.88228 1.28841 0.92716 0.91392 0.93033 1.80971 1.10622 1.11030 1.13132 1.19168 0.97732 0.94335 0.89478 1.21113 1.36026 0.94535 1.04745 0.92565 1.24951 0.94949 0.98800 0.95261 1.69927 1.39422 1.35359 1.08367 0.86655 0.79216 0.84714 0.77502 1.20079 1.21205 1.20210 0.95519 0.90721 0.91720 0.95045 0.90147 0.90197 0.90556 0.90239 0.90274 0.90591 0.90844 0.92576 0.90002 0.92914 0.90264 0.94505 0.95560 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.13 60.06 0.55 0.76 16 2 N -0.55 -7.73 4.46 -242.91 -1.08 -8.81 16 3 C 0.06 0.73 4.88 -3.82 -0.02 0.71 16 4 C -0.11 -1.15 4.92 -26.73 -0.13 -1.28 16 5 C 0.08 0.73 3.33 -25.55 -0.08 0.65 16 6 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 7 C -0.15 -1.13 6.61 -24.60 -0.16 -1.29 16 8 C -0.16 -1.06 7.00 -25.20 -0.18 -1.23 16 9 C 0.05 0.39 7.70 37.73 0.29 0.68 16 10 O -0.37 -4.33 10.89 -35.23 -0.38 -4.71 16 11 C 0.06 0.99 4.32 -3.82 -0.02 0.97 16 12 C 0.01 0.18 2.14 -93.40 -0.20 -0.02 16 13 H 0.10 1.78 6.26 -51.93 -0.33 1.45 16 14 C 0.26 5.58 13.67 -20.76 -0.28 5.30 16 15 N -0.48 -11.31 18.54 42.15 0.78 -10.53 16 16 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 17 C -0.53 -14.22 8.60 -34.44 -0.30 -14.52 16 18 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.83 13.28 55.43 0.74 -25.10 16 21 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.95 6.21 -51.93 -0.32 0.63 16 27 H 0.06 0.67 6.47 -51.93 -0.34 0.34 16 28 H 0.03 0.36 8.12 -51.92 -0.42 -0.06 16 29 H 0.08 1.10 7.71 -51.93 -0.40 0.70 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.69 6.55 -51.93 -0.34 0.35 16 32 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 39 H 0.08 1.29 7.93 -51.93 -0.41 0.87 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -31.20 342.96 -7.71 -38.91 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -7.16 Total: -4.42 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.75 Total: -7.01 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.43 Total: -44.44 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.38 Total: -4.71 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.20 -7.71 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342613267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.817 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds