Wall clock time and date at job start Mon Mar 30 2020 01:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00305 * 2 1 4 4 C 1.53001 * 109.46927 * 66.04169 * 3 2 1 5 5 C 1.53004 * 109.47218 * 180.02562 * 4 3 2 6 6 H 1.09008 * 110.54595 * 56.43198 * 5 4 3 7 7 C 1.55227 * 110.64294 * 179.36948 * 5 4 3 8 8 C 1.54813 * 101.98357 * 155.43882 * 7 5 4 9 9 C 1.54098 * 104.30472 * 339.26359 * 8 7 5 10 10 O 1.43744 * 107.29564 * 357.90152 * 9 8 7 11 11 C 1.46904 * 111.00121 * 236.04934 * 2 1 3 12 12 C 1.53008 * 109.46714 * 293.95245 * 11 2 1 13 13 H 1.09001 * 109.47177 * 55.00503 * 12 11 2 14 14 C 1.47201 * 109.47175 * 295.00039 * 12 11 2 15 15 N 3.66500 * 112.02679 * 160.59049 * 2 1 3 16 16 C 1.53001 * 109.46578 * 175.00225 * 12 11 2 17 17 C 1.50708 * 109.46721 * 185.00219 * 16 12 11 18 18 H 1.07997 * 119.99781 * 359.97438 * 17 16 12 19 19 C 1.37880 * 119.99730 * 180.02562 * 17 16 12 20 20 N 1.31504 * 119.99999 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99694 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46934 * 59.99901 * 21 19 17 23 23 H 1.48493 * 109.47149 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47005 * 300.00109 * 21 19 17 25 25 H 1.09002 * 109.46895 * 60.00159 * 1 2 3 26 26 H 1.09002 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47218 * 300.00348 * 1 2 3 28 28 H 1.09010 * 109.47013 * 306.04827 * 3 2 1 29 29 H 1.08991 * 109.47499 * 186.04731 * 3 2 1 30 30 H 1.08996 * 109.46842 * 60.00539 * 4 3 2 31 31 H 1.09000 * 109.47537 * 300.00754 * 4 3 2 32 32 H 1.08999 * 110.89081 * 37.30614 * 7 5 4 33 33 H 1.09003 * 111.02102 * 273.63128 * 7 5 4 34 34 H 1.09002 * 110.48794 * 220.51904 * 8 7 5 35 35 H 1.09002 * 110.48657 * 98.00326 * 8 7 5 36 36 H 1.08999 * 109.88182 * 117.33024 * 9 8 7 37 37 H 1.09008 * 109.87958 * 238.32904 * 9 8 7 38 38 H 1.08997 * 109.47219 * 53.95514 * 11 2 1 39 39 H 1.09002 * 109.47001 * 173.95809 * 11 2 1 40 40 H 1.08998 * 109.47128 * 304.99385 * 16 12 11 41 41 H 1.08999 * 109.47343 * 65.00168 * 16 12 11 42 42 H 0.97007 * 120.00207 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1793 3.4860 1.3180 6 1 1.8044 4.0394 0.4570 7 6 1.8111 4.2135 2.6390 8 6 2.9194 5.2903 2.7326 9 6 4.0474 4.7553 1.8292 10 8 3.6229 3.4769 1.3274 11 6 1.9955 -0.7659 -1.1377 12 6 1.6315 -2.2426 -0.9704 13 1 0.5532 -2.3389 -0.8434 14 6 2.3156 -2.7855 0.2146 15 7 2.8435 -3.2044 1.1290 16 6 2.0701 -3.0198 -2.2132 17 6 1.6031 -4.4485 -2.1029 18 1 1.0494 -4.7700 -1.2331 19 6 1.8838 -5.3453 -3.1118 20 7 2.5585 -4.9539 -4.1705 21 14 1.3057 -7.1163 -2.9747 22 1 -0.1753 -7.1468 -2.8693 23 1 1.7312 -7.8707 -4.1809 24 1 1.9010 -7.7391 -1.7652 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.5611 1.9274 -0.8310 29 1 3.0797 1.3444 -0.1083 30 1 2.0658 1.5015 2.1491 31 1 0.5472 2.0844 1.4265 32 1 1.8606 3.5295 3.4862 33 1 0.8257 4.6744 2.5700 34 1 3.2685 5.3901 3.7603 35 1 2.5539 6.2473 2.3602 36 1 4.2151 5.4421 0.9996 37 1 4.9641 4.6429 2.4082 38 1 1.5612 -0.3872 -2.0628 39 1 3.0798 -0.6611 -1.1756 40 1 1.6331 -2.5624 -3.1008 41 1 3.1571 -2.9978 -2.2907 42 1 2.7557 -5.5848 -4.8806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342613267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:14 Heat of formation + Delta-G solvation = -54.362134 kcal Electronic energy + Delta-G solvation = -19889.083142 eV Core-core repulsion = 16867.740806 eV Total energy + Delta-G solvation = -3021.342337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.42102 -39.33324 -37.31389 -35.54294 -34.09534 -33.03988 -32.45255 -29.04769 -28.48405 -26.89465 -24.63517 -23.48703 -22.60534 -22.01477 -21.53905 -18.51410 -18.23761 -17.57499 -17.08484 -16.59185 -16.43780 -15.99511 -15.71925 -15.59614 -14.72604 -14.52268 -14.47680 -14.24392 -13.87725 -13.70000 -13.57874 -13.21620 -13.02146 -12.81860 -12.65722 -12.61747 -12.48474 -12.47293 -12.35401 -12.28395 -11.88841 -11.66309 -11.62995 -11.50051 -11.33134 -11.03227 -10.56522 -10.54860 -9.19510 -8.19082 -6.27741 1.41150 1.43214 1.50282 2.06189 2.13856 2.41781 2.94525 2.98494 3.16070 3.34846 3.72037 3.83582 4.05120 4.06786 4.15890 4.19593 4.32614 4.36962 4.41188 4.58035 4.65915 4.69830 4.75670 4.79112 4.83981 4.86795 4.92168 4.96882 4.99598 5.08338 5.15984 5.20601 5.24785 5.34477 5.46097 5.61261 5.78979 6.05697 6.09131 6.22688 6.24100 6.82837 6.93117 7.40736 8.91788 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041820 B = 0.003129 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.374648 B = 8944.973527 C = 8992.651814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.562 5.562 3 C 0.063 3.937 4 C -0.102 4.102 5 C 0.073 3.927 6 H 0.079 0.921 7 C -0.147 4.147 8 C -0.152 4.152 9 C 0.037 3.963 10 O -0.404 6.404 11 C 0.072 3.928 12 C 0.021 3.979 13 H 0.120 0.880 14 C 0.267 3.733 15 N -0.515 5.515 16 C 0.038 3.962 17 C -0.540 4.540 18 H 0.054 0.946 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.950 3.050 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.035 0.965 41 H -0.001 1.001 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 22.925 9.248 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.286 5.286 3 C -0.065 4.065 4 C -0.140 4.140 5 C 0.016 3.984 6 H 0.097 0.903 7 C -0.185 4.185 8 C -0.190 4.190 9 C -0.040 4.040 10 O -0.325 6.325 11 C -0.057 4.057 12 C -0.001 4.001 13 H 0.137 0.863 14 C -0.049 4.049 15 N -0.193 5.193 16 C 0.000 4.000 17 C -0.578 4.578 18 H 0.073 0.927 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.775 3.225 22 H -0.186 1.186 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.017 0.983 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.136 21.841 10.829 24.727 hybrid contribution -0.318 -0.593 -1.179 1.357 sum -4.453 21.248 9.650 23.758 Atomic orbital electron populations 1.22571 0.86201 1.02643 1.01805 1.61959 1.09343 1.14163 1.43133 1.22026 0.99701 0.87335 0.97427 1.21586 1.01638 0.93317 0.97441 1.23324 0.80604 0.96356 0.98123 0.90348 1.23202 1.00253 0.97776 0.97275 1.22937 0.95228 0.99605 1.01213 1.23301 0.98550 0.84908 0.97244 1.88913 1.21696 1.35542 1.86300 1.22044 1.00474 0.90288 0.92849 1.19226 0.99807 0.94045 0.87014 0.86294 1.29349 0.92002 0.90517 0.93062 1.80965 1.11754 1.12173 1.14382 1.18988 0.95849 0.93675 0.91529 1.21521 1.35621 0.96247 1.04439 0.92740 1.25732 0.95231 1.02707 0.95131 1.70027 1.40604 1.36661 1.09080 0.85732 0.79436 0.80114 0.77207 1.18587 1.20668 1.20727 0.94058 0.91525 0.89905 0.93600 0.92244 0.92376 0.88636 0.90993 0.88272 0.89848 0.89154 0.91778 0.89939 0.91272 0.91314 0.94650 0.98273 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.13 127.69 1.17 1.50 16 2 N -0.56 -15.11 4.46 -922.42 -4.12 -19.23 16 3 C 0.06 1.47 4.88 86.30 0.42 1.89 16 4 C -0.10 -2.00 4.92 30.60 0.15 -1.85 16 5 C 0.07 1.28 3.33 31.36 0.10 1.38 16 6 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 7 C -0.15 -1.90 6.61 31.98 0.21 -1.69 16 8 C -0.15 -1.72 7.00 31.58 0.22 -1.50 16 9 C 0.04 0.58 7.70 72.35 0.56 1.14 16 10 O -0.40 -9.30 10.89 -148.98 -1.62 -10.92 16 11 C 0.07 2.22 4.32 86.31 0.37 2.60 16 12 C 0.02 0.78 2.14 -12.60 -0.03 0.76 16 13 H 0.12 4.06 6.26 -2.39 -0.01 4.05 16 14 C 0.27 11.58 13.67 89.44 1.22 12.80 16 15 N -0.52 -24.37 18.54 20.01 0.37 -24.00 16 16 C 0.04 1.82 4.42 29.85 0.13 1.95 16 17 C -0.54 -29.15 8.60 25.60 0.22 -28.93 16 18 H 0.05 2.90 7.59 -2.91 -0.02 2.88 16 19 C 0.01 0.61 5.46 84.66 0.46 1.07 16 20 N -0.92 -53.79 13.28 21.45 0.28 -53.51 16 21 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 1.54 6.21 -2.39 -0.01 1.53 16 27 H 0.08 1.48 6.47 -2.39 -0.02 1.46 16 28 H 0.05 0.94 8.12 -2.38 -0.02 0.92 16 29 H 0.06 1.63 7.71 -2.39 -0.02 1.62 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.48 6.55 -2.39 -0.02 1.46 16 32 H 0.07 1.03 8.06 -2.39 -0.02 1.01 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 39 H 0.07 2.24 7.93 -2.39 -0.02 2.22 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -66.67 342.96 3.13 -63.54 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 0.98 Total: 7.11 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 5.21 Total: -8.90 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -3.46 Total: -96.74 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -1.62 Total: -10.92 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.67 3.13 -63.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342613267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.176 kcal (2) G-P(sol) polarization free energy of solvation -66.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds