Wall clock time and date at job start Mon Mar 30 2020 01:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99769 * 2 1 4 4 C 1.52997 * 109.47254 * 66.04707 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.82798 * 305.57174 * 5 4 3 7 7 C 1.54383 * 109.83615 * 184.58534 * 5 4 3 8 8 C 1.55300 * 102.25534 * 219.13218 * 7 5 4 9 9 C 1.54943 * 100.94324 * 34.13359 * 8 7 5 10 10 O 1.43237 * 109.82961 * 66.45238 * 5 4 3 11 11 C 1.46896 * 110.99805 * 236.04721 * 2 1 3 12 12 C 1.53005 * 109.47355 * 293.95002 * 11 2 1 13 13 H 1.08998 * 109.46748 * 55.00129 * 12 11 2 14 14 C 1.47196 * 109.47140 * 295.00317 * 12 11 2 15 15 N 3.66490 * 112.02724 * 160.59015 * 2 1 3 16 16 C 1.52995 * 109.46920 * 175.00047 * 12 11 2 17 17 C 1.50704 * 109.46975 * 185.00257 * 16 12 11 18 18 H 1.08004 * 119.99791 * 0.02562 * 17 16 12 19 19 C 1.37873 * 120.00150 * 180.02562 * 17 16 12 20 20 N 1.31515 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47076 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47423 * 119.99507 * 21 19 17 24 24 H 1.48497 * 109.47241 * 239.99808 * 21 19 17 25 25 H 1.08995 * 109.47407 * 59.99898 * 1 2 3 26 26 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46848 * 299.99626 * 1 2 3 28 28 H 1.09002 * 109.47043 * 186.04778 * 3 2 1 29 29 H 1.09001 * 109.47354 * 306.04839 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00004 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99633 * 4 3 2 32 32 H 1.09004 * 110.84338 * 337.32655 * 7 5 4 33 33 H 1.08998 * 110.84494 * 100.93647 * 7 5 4 34 34 H 1.09001 * 111.12412 * 276.20990 * 8 7 5 35 35 H 1.09007 * 111.15981 * 152.07209 * 8 7 5 36 36 H 1.08997 * 110.30959 * 204.64068 * 9 8 7 37 37 H 1.08999 * 110.39580 * 82.51489 * 9 8 7 38 38 H 1.09006 * 109.47466 * 53.95276 * 11 2 1 39 39 H 1.09000 * 109.46995 * 173.95474 * 11 2 1 40 40 H 1.08997 * 109.47206 * 304.99920 * 16 12 11 41 41 H 1.09004 * 109.47187 * 65.00726 * 16 12 11 42 42 H 0.97000 * 120.00015 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1802 3.4856 1.3186 6 1 3.2504 3.4705 1.1123 7 6 1.9183 4.1471 2.6886 8 6 1.5399 5.5987 2.2868 9 6 0.7987 5.3499 0.9491 10 8 1.5050 4.2658 0.3251 11 6 1.9955 -0.7659 -1.1376 12 6 1.6315 -2.2427 -0.9703 13 1 0.5533 -2.3389 -0.8433 14 6 2.3157 -2.7854 0.2146 15 7 2.8436 -3.2043 1.1290 16 6 2.0700 -3.0198 -2.2131 17 6 1.6032 -4.4485 -2.1028 18 1 1.0488 -4.7698 -1.2334 19 6 1.8838 -5.3453 -3.1118 20 7 2.5584 -4.9539 -4.1707 21 14 1.3057 -7.1163 -2.9747 22 1 0.5739 -7.3005 -1.6957 23 1 0.4039 -7.4321 -4.1114 24 1 2.4803 -8.0243 -3.0076 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.0797 1.3444 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 0.5472 2.0844 1.4265 31 1 2.0658 1.5016 2.1492 32 1 1.0907 3.6587 3.2033 33 1 2.8187 4.1368 3.3028 34 1 2.4301 6.2091 2.1352 35 1 0.8774 6.0513 3.0248 36 1 0.8415 6.2402 0.3217 37 1 -0.2377 5.0687 1.1356 38 1 1.5611 -0.3872 -2.0629 39 1 3.0797 -0.6611 -1.1756 40 1 1.6330 -2.5623 -3.1007 41 1 3.1571 -2.9978 -2.2907 42 1 2.7555 -5.5847 -4.8806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342613269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:17 Heat of formation + Delta-G solvation = -35.654070 kcal Electronic energy + Delta-G solvation = -19927.407747 eV Core-core repulsion = 16906.876653 eV Total energy + Delta-G solvation = -3020.531094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.79980 -38.04912 -35.74990 -33.70774 -32.71342 -32.28389 -31.14359 -27.89512 -27.28390 -25.56707 -23.35026 -22.07148 -21.64604 -21.15719 -20.46541 -17.21386 -16.68015 -16.56885 -16.24792 -15.37326 -15.06143 -14.65708 -14.36098 -14.22787 -13.83336 -13.60121 -12.98213 -12.90378 -12.67237 -12.25944 -12.12648 -12.03992 -11.88609 -11.65115 -11.53022 -11.35105 -11.22747 -11.14023 -11.03724 -10.90877 -10.70969 -10.61856 -10.44270 -10.08472 -9.72057 -9.48446 -9.16858 -8.43798 -8.10801 -6.07363 -4.10266 3.29947 3.38090 3.42886 3.58917 3.77910 3.88523 4.03722 4.19903 4.43217 4.52821 4.60855 4.86985 4.91837 4.97787 5.06044 5.23934 5.30790 5.36159 5.37935 5.42248 5.45573 5.52221 5.55969 5.61374 5.72779 5.75125 5.83828 5.87586 6.03021 6.10429 6.15492 6.21899 6.44819 6.55330 6.82882 7.25467 7.26718 7.46494 7.56660 7.88287 8.26129 8.63710 8.94815 9.55076 11.03635 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.044364 B = 0.003140 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.995509 B = 8914.452852 C = 9150.325467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.060 3.940 4 C -0.125 4.125 5 C 0.080 3.920 6 H 0.081 0.919 7 C -0.151 4.151 8 C -0.158 4.158 9 C 0.050 3.950 10 O -0.377 6.377 11 C 0.063 3.937 12 C 0.009 3.991 13 H 0.100 0.900 14 C 0.258 3.742 15 N -0.482 5.482 16 C 0.031 3.969 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 21.432 9.423 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.068 4.068 4 C -0.163 4.163 5 C 0.022 3.978 6 H 0.098 0.902 7 C -0.189 4.189 8 C -0.195 4.195 9 C -0.027 4.027 10 O -0.296 6.296 11 C -0.066 4.066 12 C -0.013 4.013 13 H 0.118 0.882 14 C -0.059 4.059 15 N -0.159 5.159 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.075 20.458 10.851 23.361 hybrid contribution -0.776 -0.463 -0.884 1.264 sum -3.851 19.995 9.967 22.671 Atomic orbital electron populations 1.22476 0.87697 1.02427 1.00296 1.62042 1.07959 1.13221 1.43892 1.22024 1.00002 0.88051 0.96758 1.21985 1.01670 0.93766 0.98842 1.22787 0.96826 0.91058 0.87110 0.90151 1.23176 1.02875 0.95230 0.97574 1.23265 1.01213 0.97261 0.97790 1.23347 0.95652 0.90285 0.93397 1.88465 1.67284 1.41819 1.32066 1.22232 1.00684 0.92239 0.91458 1.19264 0.99201 0.92637 0.90165 0.88214 1.28852 0.92663 0.91331 0.93017 1.80965 1.10729 1.11061 1.13153 1.19179 0.97719 0.94378 0.89511 1.21186 1.35813 0.94499 1.04755 0.92466 1.24958 0.94974 0.98833 0.95269 1.69951 1.39568 1.35157 1.08383 0.86540 0.78573 0.84894 0.78102 1.19675 1.20870 1.20975 0.95441 0.90839 0.91807 0.91090 0.94043 0.91418 0.90227 0.90293 0.90001 0.90443 0.90075 0.89960 0.92372 0.92873 0.90373 0.94470 0.95569 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.13 60.07 0.55 0.79 16 2 N -0.55 -7.80 4.46 -242.91 -1.08 -8.89 16 3 C 0.06 0.74 4.87 -3.83 -0.02 0.72 16 4 C -0.12 -1.32 4.71 -26.74 -0.13 -1.44 16 5 C 0.08 0.76 3.52 -26.01 -0.09 0.66 16 6 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.15 -1.09 6.54 -24.79 -0.16 -1.25 16 8 C -0.16 -0.99 7.15 -24.49 -0.18 -1.17 16 9 C 0.05 0.39 7.78 38.18 0.30 0.69 16 10 O -0.38 -4.11 10.63 -35.23 -0.37 -4.48 16 11 C 0.06 0.99 4.32 -3.82 -0.02 0.97 16 12 C 0.01 0.18 2.14 -93.41 -0.20 -0.02 16 13 H 0.10 1.80 6.26 -51.93 -0.33 1.47 16 14 C 0.26 5.55 13.67 -20.76 -0.28 5.27 16 15 N -0.48 -11.19 18.54 42.15 0.78 -10.41 16 16 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 17 C -0.52 -14.17 8.60 -34.44 -0.30 -14.46 16 18 H 0.06 1.54 7.59 -52.48 -0.40 1.15 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 21 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.97 6.21 -51.93 -0.32 0.65 16 27 H 0.06 0.72 6.47 -51.93 -0.34 0.39 16 28 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 29 H 0.04 0.54 7.86 -51.93 -0.41 0.13 16 30 H 0.07 0.72 6.55 -51.93 -0.34 0.38 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.55 7.85 -51.93 -0.41 0.15 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 39 H 0.08 1.24 7.93 -51.93 -0.41 0.83 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -30.96 342.59 -7.69 -38.65 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -7.15 Total: -4.44 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.74 Total: -7.02 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.43 Total: -44.37 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.37 Total: -4.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.96 -7.69 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342613269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.997 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds