Wall clock time and date at job start Mon Mar 30 2020 01:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99769 * 2 1 4 4 C 1.52997 * 109.47254 * 66.04707 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.82798 * 305.57174 * 5 4 3 7 7 C 1.54383 * 109.83615 * 184.58534 * 5 4 3 8 8 C 1.55300 * 102.25534 * 219.13218 * 7 5 4 9 9 C 1.54943 * 100.94324 * 34.13359 * 8 7 5 10 10 O 1.43237 * 109.82961 * 66.45238 * 5 4 3 11 11 C 1.46896 * 110.99805 * 236.04721 * 2 1 3 12 12 C 1.53005 * 109.47355 * 293.95002 * 11 2 1 13 13 H 1.08998 * 109.46748 * 55.00129 * 12 11 2 14 14 C 1.47196 * 109.47140 * 295.00317 * 12 11 2 15 15 N 3.66490 * 112.02724 * 160.59015 * 2 1 3 16 16 C 1.52995 * 109.46920 * 175.00047 * 12 11 2 17 17 C 1.50704 * 109.46975 * 185.00257 * 16 12 11 18 18 H 1.08004 * 119.99791 * 0.02562 * 17 16 12 19 19 C 1.37873 * 120.00150 * 180.02562 * 17 16 12 20 20 N 1.31515 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47076 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47423 * 119.99507 * 21 19 17 24 24 H 1.48497 * 109.47241 * 239.99808 * 21 19 17 25 25 H 1.08995 * 109.47407 * 59.99898 * 1 2 3 26 26 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46848 * 299.99626 * 1 2 3 28 28 H 1.09002 * 109.47043 * 186.04778 * 3 2 1 29 29 H 1.09001 * 109.47354 * 306.04839 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00004 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99633 * 4 3 2 32 32 H 1.09004 * 110.84338 * 337.32655 * 7 5 4 33 33 H 1.08998 * 110.84494 * 100.93647 * 7 5 4 34 34 H 1.09001 * 111.12412 * 276.20990 * 8 7 5 35 35 H 1.09007 * 111.15981 * 152.07209 * 8 7 5 36 36 H 1.08997 * 110.30959 * 204.64068 * 9 8 7 37 37 H 1.08999 * 110.39580 * 82.51489 * 9 8 7 38 38 H 1.09006 * 109.47466 * 53.95276 * 11 2 1 39 39 H 1.09000 * 109.46995 * 173.95474 * 11 2 1 40 40 H 1.08997 * 109.47206 * 304.99920 * 16 12 11 41 41 H 1.09004 * 109.47187 * 65.00726 * 16 12 11 42 42 H 0.97000 * 120.00015 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1802 3.4856 1.3186 6 1 3.2504 3.4705 1.1123 7 6 1.9183 4.1471 2.6886 8 6 1.5399 5.5987 2.2868 9 6 0.7987 5.3499 0.9491 10 8 1.5050 4.2658 0.3251 11 6 1.9955 -0.7659 -1.1376 12 6 1.6315 -2.2427 -0.9703 13 1 0.5533 -2.3389 -0.8433 14 6 2.3157 -2.7854 0.2146 15 7 2.8436 -3.2043 1.1290 16 6 2.0700 -3.0198 -2.2131 17 6 1.6032 -4.4485 -2.1028 18 1 1.0488 -4.7698 -1.2334 19 6 1.8838 -5.3453 -3.1118 20 7 2.5584 -4.9539 -4.1707 21 14 1.3057 -7.1163 -2.9747 22 1 0.5739 -7.3005 -1.6957 23 1 0.4039 -7.4321 -4.1114 24 1 2.4803 -8.0243 -3.0076 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.0797 1.3444 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 0.5472 2.0844 1.4265 31 1 2.0658 1.5016 2.1492 32 1 1.0907 3.6587 3.2033 33 1 2.8187 4.1368 3.3028 34 1 2.4301 6.2091 2.1352 35 1 0.8774 6.0513 3.0248 36 1 0.8415 6.2402 0.3217 37 1 -0.2377 5.0687 1.1356 38 1 1.5611 -0.3872 -2.0629 39 1 3.0797 -0.6611 -1.1756 40 1 1.6330 -2.5623 -3.1007 41 1 3.1571 -2.9978 -2.2907 42 1 2.7555 -5.5847 -4.8806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342613269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:17 Heat of formation + Delta-G solvation = -54.435542 kcal Electronic energy + Delta-G solvation = -19928.222173 eV Core-core repulsion = 16906.876653 eV Total energy + Delta-G solvation = -3021.345520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50632 -39.32388 -37.29475 -35.53869 -34.06710 -33.07202 -32.42435 -29.06392 -28.50925 -26.91025 -24.61719 -23.47581 -22.72068 -22.04029 -21.35836 -18.51897 -18.23545 -17.88549 -17.13962 -16.65774 -16.21789 -16.10467 -15.64056 -15.19459 -14.83564 -14.58393 -14.36932 -14.19115 -14.05966 -13.76522 -13.49509 -13.18985 -13.04707 -12.94288 -12.71729 -12.61645 -12.52555 -12.47348 -12.36703 -12.13098 -11.86885 -11.73419 -11.63801 -11.57891 -11.33347 -11.03161 -10.55926 -10.41941 -9.22445 -8.19677 -6.28154 1.39171 1.42014 1.52757 2.06142 2.13741 2.41397 2.91855 2.99285 3.15626 3.34434 3.64347 3.86485 4.01696 4.09247 4.16322 4.25773 4.31745 4.34405 4.45103 4.57071 4.65189 4.71914 4.75855 4.80678 4.84478 4.85491 4.93000 4.97332 4.99120 5.02223 5.13091 5.18154 5.28996 5.36774 5.46137 5.60794 5.78845 6.06961 6.16385 6.20574 6.22643 6.82770 6.92922 7.40494 8.91588 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.044364 B = 0.003140 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.995509 B = 8914.452852 C = 9150.325467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.557 5.557 3 C 0.062 3.938 4 C -0.117 4.117 5 C 0.078 3.922 6 H 0.078 0.922 7 C -0.149 4.149 8 C -0.151 4.151 9 C 0.041 3.959 10 O -0.403 6.403 11 C 0.072 3.928 12 C 0.021 3.979 13 H 0.117 0.883 14 C 0.267 3.733 15 N -0.512 5.512 16 C 0.038 3.962 17 C -0.538 4.538 18 H 0.054 0.946 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.950 3.050 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.285 1.285 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.001 0.999 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 22.338 10.312 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.281 5.281 3 C -0.065 4.065 4 C -0.155 4.155 5 C 0.020 3.980 6 H 0.096 0.904 7 C -0.186 4.186 8 C -0.188 4.188 9 C -0.035 4.035 10 O -0.323 6.323 11 C -0.057 4.057 12 C -0.001 4.001 13 H 0.134 0.866 14 C -0.049 4.049 15 N -0.190 5.190 16 C -0.001 4.001 17 C -0.576 4.576 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.776 3.224 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.211 1.211 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.062 21.379 11.749 24.731 hybrid contribution -0.477 -0.706 -1.170 1.447 sum -4.538 20.674 10.580 23.663 Atomic orbital electron populations 1.22520 0.86640 1.02394 1.01386 1.62023 1.09024 1.14166 1.42927 1.22036 0.99710 0.87003 0.97762 1.21911 1.01710 0.94355 0.97478 1.22807 0.96490 0.90435 0.88277 0.90426 1.23176 1.03518 0.95583 0.96346 1.23258 1.01537 0.96785 0.97254 1.23543 0.95782 0.89855 0.94348 1.88435 1.67718 1.42780 1.33347 1.22056 1.00693 0.90258 0.92734 1.19195 0.99721 0.94035 0.87148 0.86579 1.29278 0.92014 0.90545 0.93025 1.80961 1.11735 1.12047 1.14260 1.18995 0.95966 0.93672 0.91477 1.21569 1.35397 0.96204 1.04416 0.92771 1.25734 0.95259 1.02723 0.95145 1.70044 1.40735 1.36508 1.09109 0.85616 0.78134 0.80270 0.78390 1.19331 1.19743 1.21072 0.94754 0.91373 0.90348 0.91420 0.94472 0.91296 0.90517 0.89992 0.88986 0.90035 0.88324 0.89120 0.92025 0.91733 0.90742 0.94829 0.98037 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.13 127.69 1.17 1.60 16 2 N -0.56 -15.18 4.46 -922.42 -4.12 -19.30 16 3 C 0.06 1.49 4.87 86.30 0.42 1.91 16 4 C -0.12 -2.31 4.71 30.59 0.14 -2.17 16 5 C 0.08 1.37 3.52 31.06 0.11 1.48 16 6 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 7 C -0.15 -1.85 6.54 31.85 0.21 -1.64 16 8 C -0.15 -1.56 7.15 32.05 0.23 -1.34 16 9 C 0.04 0.57 7.78 72.65 0.56 1.14 16 10 O -0.40 -8.33 10.63 -148.98 -1.58 -9.92 16 11 C 0.07 2.20 4.32 86.31 0.37 2.57 16 12 C 0.02 0.78 2.14 -12.60 -0.03 0.75 16 13 H 0.12 4.02 6.26 -2.39 -0.01 4.01 16 14 C 0.27 11.39 13.67 89.44 1.22 12.61 16 15 N -0.51 -23.62 18.54 20.00 0.37 -23.25 16 16 C 0.04 1.79 4.42 29.85 0.13 1.92 16 17 C -0.54 -28.98 8.60 25.60 0.22 -28.76 16 18 H 0.05 2.90 7.59 -2.91 -0.02 2.87 16 19 C 0.01 0.57 5.46 84.65 0.46 1.03 16 20 N -0.92 -53.71 13.29 21.45 0.28 -53.42 16 21 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 25 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 1.67 6.21 -2.38 -0.01 1.66 16 27 H 0.08 1.62 6.47 -2.39 -0.02 1.60 16 28 H 0.07 1.64 7.93 -2.39 -0.02 1.62 16 29 H 0.04 0.92 7.86 -2.39 -0.02 0.90 16 30 H 0.07 1.34 6.55 -2.39 -0.02 1.33 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 0.97 7.85 -2.38 -0.02 0.96 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 1.85 8.12 -2.38 -0.02 1.83 16 39 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 40 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 42 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -64.91 342.59 3.18 -61.73 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.98 Total: 7.15 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.22 Total: -8.90 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -3.46 Total: -95.97 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.58 Total: -9.92 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.91 3.18 -61.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342613269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.290 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds