Wall clock time and date at job start Mon Mar 30 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46821 * 2 1 4 4 C 1.42899 * 113.99681 * 179.97438 * 3 2 1 5 5 C 1.53784 * 113.69202 * 110.93811 * 4 3 2 6 6 C 1.53778 * 87.08312 * 139.99018 * 5 4 3 7 7 C 1.53002 * 113.61171 * 220.01972 * 6 5 4 8 8 N 1.46905 * 109.47165 * 272.49711 * 7 6 5 9 9 C 1.46897 * 111.00030 * 190.00289 * 8 7 6 10 10 C 1.50698 * 109.46940 * 164.69415 * 9 8 7 11 11 H 1.08004 * 120.00179 * 358.40933 * 10 9 8 12 12 C 1.37877 * 119.99832 * 178.40862 * 10 9 8 13 13 N 1.31518 * 120.00170 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00012 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46970 * 90.00018 * 14 12 10 16 16 H 1.48502 * 109.47288 * 210.00004 * 14 12 10 17 17 H 1.48496 * 109.47142 * 330.00319 * 14 12 10 18 18 C 1.46900 * 110.99911 * 66.04558 * 8 7 6 19 19 C 1.52998 * 109.47117 * 61.81278 * 18 8 7 20 20 C 1.47195 * 109.47197 * 182.46213 * 19 18 8 21 21 N 6.96767 * 110.72312 * 295.16681 * 2 1 3 22 22 C 1.53776 * 87.07988 * 334.56475 * 6 5 4 23 23 H 1.08997 * 109.47198 * 300.00421 * 1 2 3 24 24 H 1.09006 * 109.47277 * 60.00162 * 1 2 3 25 25 H 1.09000 * 109.46705 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47073 * 240.00111 * 2 1 3 27 27 H 1.08992 * 109.47141 * 119.99970 * 2 1 3 28 28 H 1.09000 * 112.85244 * 339.66661 * 4 3 2 29 29 H 1.09000 * 113.61551 * 254.53964 * 5 4 3 30 30 H 1.09003 * 113.61244 * 25.43775 * 5 4 3 31 31 H 1.09001 * 113.69256 * 89.12622 * 6 5 4 32 32 H 1.08997 * 109.47654 * 32.49668 * 7 6 5 33 33 H 1.09003 * 109.47199 * 152.49841 * 7 6 5 34 34 H 1.09002 * 109.47137 * 284.69349 * 9 8 7 35 35 H 1.09003 * 109.47015 * 44.69234 * 9 8 7 36 36 H 0.97001 * 119.99989 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.46872 * 181.81538 * 18 8 7 38 38 H 1.09001 * 109.47123 * 301.81353 * 18 8 7 39 39 H 1.08997 * 109.47507 * 302.46687 * 19 18 8 40 40 H 1.09010 * 109.46843 * 62.46354 * 19 18 8 41 41 H 1.08996 * 113.62085 * 270.88351 * 22 6 5 42 42 H 1.09008 * 113.61505 * 139.98055 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0076 2.0104 -1.3145 6 6 4.9923 2.8185 -0.4530 7 6 5.2363 4.2379 -0.9694 8 7 6.3292 4.2207 -1.9509 9 6 6.7517 5.5856 -2.2923 10 6 8.0874 5.5386 -2.9885 11 1 8.5858 4.5921 -3.1374 12 6 8.6732 6.7039 -3.4355 13 7 9.8391 6.6631 -4.0427 14 14 7.8108 8.3410 -3.1788 15 1 8.2294 8.9223 -1.8780 16 1 8.1767 9.2709 -4.2772 17 1 6.3407 8.1311 -3.1769 18 6 5.9439 3.4723 -3.1548 19 6 4.7480 4.1567 -3.8198 20 6 4.3246 3.3743 -4.9926 21 7 3.9955 2.7713 -5.8982 22 6 3.9468 2.7437 0.6722 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.9270 0.5547 0.3500 29 1 4.4886 1.2516 -1.9317 30 1 3.3063 2.6299 -1.8735 31 1 5.9159 2.2856 -0.2270 32 1 4.3291 4.6135 -1.4425 33 1 5.5067 4.8863 -0.1360 34 1 6.0134 6.0400 -2.9530 35 1 6.8374 6.1780 -1.3813 36 1 10.2510 7.4829 -4.3575 37 1 6.7821 3.4478 -3.8512 38 1 5.6718 2.4538 -2.8778 39 1 3.9242 4.2204 -3.1089 40 1 5.0333 5.1601 -4.1361 41 1 3.2289 3.5637 0.6565 42 1 4.3786 2.5768 1.6591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351733376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:23 Heat of formation + Delta-G solvation = 2.589022 kcal Electronic energy + Delta-G solvation = -20462.010171 eV Core-core repulsion = 17443.137422 eV Total energy + Delta-G solvation = -3018.872749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.84763 -37.88129 -36.38102 -35.64421 -32.57696 -31.26214 -30.61223 -28.61194 -26.16972 -25.60692 -23.85304 -23.02123 -21.86340 -19.71391 -19.46558 -17.52648 -17.04834 -16.63559 -15.95507 -15.58537 -15.10421 -14.94141 -14.34087 -14.01388 -13.82245 -13.53205 -13.18156 -12.91737 -12.61997 -12.45347 -12.35538 -12.26474 -12.16343 -11.83483 -11.67240 -11.44069 -11.35355 -11.10877 -11.04000 -10.86838 -10.58905 -10.41212 -10.19305 -10.03281 -9.82393 -9.42239 -9.34408 -8.60337 -7.49106 -6.08429 -4.06322 3.03342 3.05690 3.25135 3.32085 3.34059 3.57673 4.23793 4.37813 4.50516 4.62402 4.70599 4.78665 4.87185 4.99077 5.02985 5.15327 5.22248 5.27738 5.34202 5.47194 5.52095 5.63128 5.67109 5.71913 5.78315 5.82663 5.86154 5.92172 5.99429 6.06641 6.19122 6.24152 6.51130 6.58820 6.78084 6.86034 7.18946 7.53978 7.76305 7.83227 7.94132 8.60234 9.01761 9.52738 11.04688 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.004460 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.784793 B = 6277.183468 C = 6934.616131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.377 6.377 4 C 0.060 3.940 5 C -0.154 4.154 6 C -0.099 4.099 7 C 0.057 3.943 8 N -0.516 5.516 9 C 0.154 3.846 10 C -0.509 4.509 11 H 0.082 0.918 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.871 3.129 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.068 3.932 19 C -0.076 4.076 20 C 0.223 3.777 21 N -0.457 5.457 22 C -0.130 4.130 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.033 0.967 33 H 0.074 0.926 34 H -0.003 1.003 35 H 0.026 0.974 36 H 0.264 0.736 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 -9.319 9.913 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.296 6.296 4 C 0.002 3.998 5 C -0.192 4.192 6 C -0.118 4.118 7 C -0.072 4.072 8 N -0.237 5.237 9 C 0.028 3.972 10 C -0.548 4.548 11 H 0.100 0.900 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.699 3.301 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.192 1.192 18 C -0.062 4.062 19 C -0.118 4.118 20 C -0.095 4.095 21 N -0.135 5.135 22 C -0.168 4.168 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.015 0.985 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.134 0.866 41 H 0.107 0.893 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.092 -10.168 8.701 20.171 hybrid contribution -0.705 1.452 0.036 1.614 sum -15.797 -8.717 8.737 20.046 Atomic orbital electron populations 1.21748 0.94043 1.02051 1.03063 1.22466 0.95420 0.84373 0.99841 1.87952 1.21131 1.25875 1.94657 1.23745 0.80525 0.98000 0.97512 1.23713 0.98462 1.00147 0.96833 1.22340 0.96998 0.96946 0.95519 1.22154 0.93406 0.95314 0.96289 1.62217 1.33229 1.18313 1.09941 1.20326 0.96561 0.84561 0.95776 1.21012 1.02082 0.95575 1.36098 0.90033 1.24904 0.94751 0.98741 0.94892 1.69889 1.16292 1.28092 1.39485 0.86929 0.80487 0.84550 0.78174 1.20162 1.21284 1.19150 1.22183 0.94762 0.96771 0.92518 1.20274 1.01654 0.99857 0.90001 1.29241 0.92575 0.93392 0.94251 1.81179 1.10070 1.10719 1.11548 1.23240 0.97924 0.97341 0.98285 0.91945 0.91891 0.91333 0.93512 0.93600 0.89818 0.91282 0.89478 0.87993 0.94934 0.90761 0.98511 0.95634 0.92636 0.88826 0.90936 0.88071 0.86628 0.89302 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.50 6.50 37.16 0.24 0.75 16 3 O -0.38 -4.36 10.36 -35.23 -0.36 -4.73 16 4 C 0.06 0.63 4.30 -25.92 -0.11 0.52 16 5 C -0.15 -1.73 5.70 -25.92 -0.15 -1.88 16 6 C -0.10 -1.16 3.45 -89.81 -0.31 -1.47 16 7 C 0.06 0.79 4.66 -3.82 -0.02 0.77 16 8 N -0.52 -9.05 4.66 -236.07 -1.10 -10.15 16 9 C 0.15 3.26 3.66 -4.98 -0.02 3.24 16 10 C -0.51 -13.36 9.08 -34.44 -0.31 -13.67 16 11 H 0.08 2.36 7.77 -52.48 -0.41 1.95 16 12 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 13 N -0.90 -26.59 13.96 55.43 0.77 -25.81 16 14 Si 0.87 20.27 27.50 -169.99 -4.67 15.59 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -5.81 6.50 56.52 0.37 -5.45 16 18 C 0.07 1.09 4.66 -3.82 -0.02 1.07 16 19 C -0.08 -1.09 5.00 -29.52 -0.15 -1.24 16 20 C 0.22 3.52 15.44 -20.74 -0.32 3.20 16 21 N -0.46 -8.16 18.54 42.18 0.78 -7.38 16 22 C -0.13 -1.35 7.47 -25.92 -0.19 -1.55 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 29 H 0.07 0.78 7.25 -51.93 -0.38 0.40 16 30 H 0.09 1.03 6.80 -51.93 -0.35 0.68 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.03 0.43 5.71 -51.93 -0.30 0.13 16 33 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 34 H 0.00 -0.05 4.85 -51.93 -0.25 -0.31 16 35 H 0.03 0.55 7.33 -51.93 -0.38 0.17 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.09 1.75 7.22 -51.93 -0.37 1.38 16 38 H 0.07 1.03 5.25 -51.93 -0.27 0.75 16 39 H 0.10 1.24 5.07 -51.93 -0.26 0.97 16 40 H 0.12 1.78 6.35 -51.92 -0.33 1.46 16 41 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 42 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -29.89 334.15 -7.29 -37.19 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.67 Total: -0.48 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.07 Total: -9.26 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.46 Total: -43.34 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.36 Total: -4.73 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.89 -7.29 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351733376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.777 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds