Wall clock time and date at job start Mon Mar 30 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46821 * 2 1 4 4 C 1.42899 * 113.99681 * 179.97438 * 3 2 1 5 5 C 1.53784 * 113.69202 * 110.93811 * 4 3 2 6 6 C 1.53778 * 87.08312 * 139.99018 * 5 4 3 7 7 C 1.53002 * 113.61171 * 220.01972 * 6 5 4 8 8 N 1.46905 * 109.47165 * 272.49711 * 7 6 5 9 9 C 1.46897 * 111.00030 * 190.00289 * 8 7 6 10 10 C 1.50698 * 109.46940 * 164.69415 * 9 8 7 11 11 H 1.08004 * 120.00179 * 358.40933 * 10 9 8 12 12 C 1.37877 * 119.99832 * 178.40862 * 10 9 8 13 13 N 1.31518 * 120.00170 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00012 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46970 * 90.00018 * 14 12 10 16 16 H 1.48502 * 109.47288 * 210.00004 * 14 12 10 17 17 H 1.48496 * 109.47142 * 330.00319 * 14 12 10 18 18 C 1.46900 * 110.99911 * 66.04558 * 8 7 6 19 19 C 1.52998 * 109.47117 * 61.81278 * 18 8 7 20 20 C 1.47195 * 109.47197 * 182.46213 * 19 18 8 21 21 N 6.96767 * 110.72312 * 295.16681 * 2 1 3 22 22 C 1.53776 * 87.07988 * 334.56475 * 6 5 4 23 23 H 1.08997 * 109.47198 * 300.00421 * 1 2 3 24 24 H 1.09006 * 109.47277 * 60.00162 * 1 2 3 25 25 H 1.09000 * 109.46705 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47073 * 240.00111 * 2 1 3 27 27 H 1.08992 * 109.47141 * 119.99970 * 2 1 3 28 28 H 1.09000 * 112.85244 * 339.66661 * 4 3 2 29 29 H 1.09000 * 113.61551 * 254.53964 * 5 4 3 30 30 H 1.09003 * 113.61244 * 25.43775 * 5 4 3 31 31 H 1.09001 * 113.69256 * 89.12622 * 6 5 4 32 32 H 1.08997 * 109.47654 * 32.49668 * 7 6 5 33 33 H 1.09003 * 109.47199 * 152.49841 * 7 6 5 34 34 H 1.09002 * 109.47137 * 284.69349 * 9 8 7 35 35 H 1.09003 * 109.47015 * 44.69234 * 9 8 7 36 36 H 0.97001 * 119.99989 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.46872 * 181.81538 * 18 8 7 38 38 H 1.09001 * 109.47123 * 301.81353 * 18 8 7 39 39 H 1.08997 * 109.47507 * 302.46687 * 19 18 8 40 40 H 1.09010 * 109.46843 * 62.46354 * 19 18 8 41 41 H 1.08996 * 113.62085 * 270.88351 * 22 6 5 42 42 H 1.09008 * 113.61505 * 139.98055 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0076 2.0104 -1.3145 6 6 4.9923 2.8185 -0.4530 7 6 5.2363 4.2379 -0.9694 8 7 6.3292 4.2207 -1.9509 9 6 6.7517 5.5856 -2.2923 10 6 8.0874 5.5386 -2.9885 11 1 8.5858 4.5921 -3.1374 12 6 8.6732 6.7039 -3.4355 13 7 9.8391 6.6631 -4.0427 14 14 7.8108 8.3410 -3.1788 15 1 8.2294 8.9223 -1.8780 16 1 8.1767 9.2709 -4.2772 17 1 6.3407 8.1311 -3.1769 18 6 5.9439 3.4723 -3.1548 19 6 4.7480 4.1567 -3.8198 20 6 4.3246 3.3743 -4.9926 21 7 3.9955 2.7713 -5.8982 22 6 3.9468 2.7437 0.6722 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.9270 0.5547 0.3500 29 1 4.4886 1.2516 -1.9317 30 1 3.3063 2.6299 -1.8735 31 1 5.9159 2.2856 -0.2270 32 1 4.3291 4.6135 -1.4425 33 1 5.5067 4.8863 -0.1360 34 1 6.0134 6.0400 -2.9530 35 1 6.8374 6.1780 -1.3813 36 1 10.2510 7.4829 -4.3575 37 1 6.7821 3.4478 -3.8512 38 1 5.6718 2.4538 -2.8778 39 1 3.9242 4.2204 -3.1089 40 1 5.0333 5.1601 -4.1361 41 1 3.2289 3.5637 0.6565 42 1 4.3786 2.5768 1.6591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351733376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:23 Heat of formation + Delta-G solvation = -16.565503 kcal Electronic energy + Delta-G solvation = -20462.840774 eV Core-core repulsion = 17443.137422 eV Total energy + Delta-G solvation = -3019.703352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80468 -39.02944 -37.51346 -36.81739 -34.57082 -32.10574 -31.82817 -30.14773 -27.44174 -26.55485 -25.22910 -23.75796 -23.13757 -21.10184 -20.37904 -18.99275 -18.56041 -17.72317 -16.99538 -16.46644 -16.38057 -16.13638 -15.78190 -15.48243 -14.89263 -14.84334 -14.45197 -14.06571 -13.81586 -13.59634 -13.51412 -13.26473 -13.23137 -12.99000 -12.94173 -12.84392 -12.49577 -12.28074 -12.16631 -12.02337 -11.91604 -11.78852 -11.47796 -11.32245 -11.15712 -10.99140 -10.67713 -10.23061 -8.88280 -8.18421 -6.20573 1.43620 1.44130 1.53600 1.73499 1.77191 2.42631 2.82797 2.96878 3.17009 3.38605 3.73565 3.79426 3.97946 4.03219 4.15456 4.21139 4.22914 4.33120 4.44792 4.49262 4.53276 4.67046 4.71176 4.83200 4.92909 4.95425 4.98098 5.00845 5.05587 5.09239 5.14911 5.24223 5.28325 5.33950 5.37586 5.59750 5.67523 6.08943 6.41890 6.44440 6.58658 6.76550 6.88288 7.43004 8.98446 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.004460 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.784793 B = 6277.183468 C = 6934.616131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.062 3.938 5 C -0.155 4.155 6 C -0.096 4.096 7 C 0.057 3.943 8 N -0.530 5.530 9 C 0.161 3.839 10 C -0.506 4.506 11 H 0.036 0.964 12 C 0.004 3.996 13 N -0.955 5.955 14 Si 0.940 3.060 15 H -0.269 1.269 16 H -0.293 1.293 17 H -0.236 1.236 18 C 0.073 3.927 19 C -0.065 4.065 20 C 0.242 3.758 21 N -0.492 5.492 22 C -0.122 4.122 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.012 0.988 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.605 -9.063 11.531 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.315 6.315 4 C 0.004 3.996 5 C -0.192 4.192 6 C -0.115 4.115 7 C -0.071 4.071 8 N -0.252 5.252 9 C 0.034 3.966 10 C -0.545 4.545 11 H 0.055 0.945 12 C -0.192 4.192 13 N -0.596 5.596 14 Si 0.764 3.236 15 H -0.194 1.194 16 H -0.219 1.219 17 H -0.159 1.159 18 C -0.057 4.057 19 C -0.107 4.107 20 C -0.074 4.074 21 N -0.171 5.171 22 C -0.160 4.160 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.029 0.971 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.694 -9.939 10.339 22.776 hybrid contribution 0.132 1.236 -0.443 1.320 sum -17.562 -8.702 9.896 21.956 Atomic orbital electron populations 1.21765 0.93241 1.03165 1.02571 1.22653 0.96165 0.83487 1.00491 1.87927 1.21489 1.27372 1.94710 1.23753 0.80432 0.98586 0.96830 1.23707 0.98249 1.00052 0.97230 1.22235 0.97222 0.95544 0.96503 1.22250 0.92571 0.96940 0.95303 1.62069 1.35788 1.16339 1.11012 1.20110 0.94114 0.86921 0.95469 1.21314 1.03975 0.93673 1.35535 0.94543 1.25845 0.95422 1.03184 0.94776 1.70072 1.18634 1.29126 1.41783 0.85821 0.80931 0.78980 0.77882 1.19442 1.21937 1.15868 1.22049 0.94117 0.97937 0.91606 1.20248 1.01775 0.98814 0.89845 1.29389 0.91527 0.92638 0.93882 1.81202 1.11438 1.11811 1.12610 1.23182 0.97153 0.97318 0.98307 0.92037 0.92736 0.89474 0.93414 0.92371 0.88570 0.91486 0.89716 0.88639 0.93279 0.90627 0.97083 0.95071 0.92829 0.92492 0.88963 0.84996 0.87144 0.89282 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.05 0.77 6.50 71.98 0.47 1.23 16 3 O -0.40 -8.20 10.36 -148.98 -1.54 -9.74 16 4 C 0.06 1.13 4.30 31.12 0.13 1.27 16 5 C -0.15 -3.10 5.70 31.12 0.18 -2.92 16 6 C -0.10 -2.02 3.45 -10.27 -0.04 -2.05 16 7 C 0.06 1.43 4.66 86.30 0.40 1.83 16 8 N -0.53 -17.91 4.66 -900.78 -4.20 -22.11 16 9 C 0.16 6.58 3.66 85.56 0.31 6.89 16 10 C -0.51 -27.04 9.08 25.60 0.23 -26.81 16 11 H 0.04 2.22 7.77 -2.91 -0.02 2.19 16 12 C 0.00 0.23 5.47 84.65 0.46 0.69 16 13 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 14 Si 0.94 41.21 27.50 68.60 1.89 43.10 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 16 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.24 -9.07 6.50 99.48 0.65 -8.42 16 18 C 0.07 2.27 4.66 86.30 0.40 2.67 16 19 C -0.07 -1.73 5.00 28.79 0.14 -1.59 16 20 C 0.24 7.31 15.44 89.43 1.38 8.70 16 21 N -0.49 -17.13 18.54 20.01 0.37 -16.76 16 22 C -0.12 -2.17 7.47 31.12 0.23 -1.94 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 1.52 7.88 -2.39 -0.02 1.50 16 29 H 0.07 1.36 7.25 -2.39 -0.02 1.35 16 30 H 0.08 1.75 6.80 -2.39 -0.02 1.73 16 31 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.05 1.09 5.71 -2.39 -0.01 1.07 16 33 H 0.08 1.91 7.87 -2.39 -0.02 1.89 16 34 H 0.01 0.44 4.85 -2.39 -0.01 0.43 16 35 H 0.03 1.26 7.33 -2.39 -0.02 1.24 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.06 2.20 7.22 -2.39 -0.02 2.18 16 38 H 0.09 2.50 5.25 -2.39 -0.01 2.48 16 39 H 0.13 2.74 5.07 -2.39 -0.01 2.72 16 40 H 0.11 3.15 6.35 -2.38 -0.02 3.13 16 41 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 42 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -66.06 334.15 2.81 -63.25 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.94 Total: 13.67 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 5.05 Total: -13.30 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -3.53 Total: -96.98 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.54 Total: -9.74 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.89 Total: 43.10 kcal Total: -66.06 2.81 -63.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351733376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.689 kcal (2) G-P(sol) polarization free energy of solvation -66.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds