Wall clock time and date at job start Mon Mar 30 2020 01:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00200 * 2 1 4 4 C 1.53000 * 109.47062 * 293.95534 * 3 2 1 5 5 C 1.53002 * 117.49845 * 243.74925 * 4 3 2 6 6 C 1.53003 * 117.50070 * 175.08853 * 4 3 2 7 7 C 1.46900 * 110.99916 * 123.94925 * 2 1 3 8 8 C 1.53004 * 109.46863 * 66.04886 * 7 2 1 9 9 H 1.08996 * 110.88343 * 302.57128 * 8 7 2 10 10 C 1.55155 * 111.00318 * 178.65037 * 8 7 2 11 11 C 1.54315 * 102.86151 * 206.22801 * 10 8 7 12 12 N 1.47021 * 107.27672 * 22.52747 * 11 10 8 13 13 C 1.34777 * 125.64884 * 180.97209 * 12 11 10 14 14 O 1.21693 * 120.00018 * 179.68873 * 13 12 11 15 15 C 1.46377 * 120.00307 * 359.95937 * 13 12 11 16 16 H 1.08001 * 119.99387 * 359.73219 * 15 13 12 17 17 C 1.40043 * 120.00458 * 179.72666 * 15 13 12 18 18 N 1.30674 * 120.00000 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00093 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47199 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46966 * 119.99861 * 19 17 15 22 22 H 1.48498 * 109.47127 * 239.99959 * 19 17 15 23 23 C 1.47423 * 108.70520 * 0.70159 * 12 11 10 24 24 H 1.09006 * 109.47396 * 296.04948 * 1 2 3 25 25 H 1.09008 * 109.47083 * 56.04797 * 1 2 3 26 26 H 1.08998 * 109.47174 * 176.04610 * 1 2 3 27 27 H 1.08998 * 109.46988 * 53.95046 * 3 2 1 28 28 H 1.09001 * 109.47455 * 173.95171 * 3 2 1 29 29 H 1.09002 * 115.55089 * 29.40798 * 4 3 2 30 30 H 1.09008 * 117.49716 * 359.97438 * 5 4 3 31 31 H 1.08994 * 117.50280 * 145.01451 * 5 4 3 32 32 H 1.08995 * 117.49499 * 214.97767 * 6 4 3 33 33 H 1.08994 * 117.49678 * 359.97438 * 6 4 3 34 34 H 1.08998 * 109.47662 * 306.05211 * 7 2 1 35 35 H 1.08997 * 109.47215 * 186.04457 * 7 2 1 36 36 H 1.08995 * 110.72096 * 324.77985 * 10 8 7 37 37 H 1.09002 * 110.72275 * 88.06193 * 10 8 7 38 38 H 1.08998 * 109.98676 * 263.04590 * 11 10 8 39 39 H 1.09005 * 109.77661 * 141.88766 * 11 10 8 40 40 H 0.97004 * 120.00230 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.36373 * 94.93512 * 23 12 11 42 42 H 1.09002 * 110.37156 * 217.15660 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.7805 2.4748 -2.2383 6 6 1.9920 3.5368 -1.4679 7 6 1.9954 -0.7659 1.1376 8 6 1.6314 -2.2426 0.9704 9 1 0.5523 -2.3694 0.8842 10 6 2.2004 -3.0912 2.1380 11 6 2.3523 -4.4898 1.5039 12 7 2.4369 -4.3023 0.0481 13 6 2.5570 -5.2864 -0.8649 14 8 2.6128 -5.0137 -2.0496 15 6 2.6142 -6.6835 -0.4321 16 1 2.5646 -6.9255 0.6193 17 6 2.7331 -7.7064 -1.3812 18 7 2.7936 -7.4136 -2.6532 19 14 2.8054 -9.4894 -0.8287 20 1 2.7179 -9.5526 0.6523 21 1 1.6694 -10.2384 -1.4236 22 1 4.0857 -10.0946 -1.2757 23 6 2.3622 -2.8601 -0.2479 24 1 -0.3634 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1083 29 1 0.7099 1.7139 -1.7882 30 1 3.7958 2.2609 -1.9042 31 1 2.6148 2.4062 -3.3134 32 1 1.3077 4.1665 -2.0366 33 1 2.4881 4.0214 -0.6271 34 1 1.5610 -0.3872 2.0628 35 1 3.0796 -0.6610 1.1757 36 1 3.1663 -2.7036 2.4615 37 1 1.4975 -3.1222 2.9706 38 1 1.4870 -5.1059 1.7486 39 1 3.2629 -4.9640 1.8701 40 1 2.8756 -8.1221 -3.3107 41 1 3.3635 -2.4399 -0.3425 42 1 1.7920 -2.6892 -1.1610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356744836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:26 Heat of formation + Delta-G solvation = -31.691882 kcal Electronic energy + Delta-G solvation = -20404.246954 eV Core-core repulsion = 17383.887673 eV Total energy + Delta-G solvation = -3020.359281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43279 -39.22750 -37.89522 -36.54485 -34.65991 -32.63788 -30.10797 -28.86014 -28.46965 -26.98163 -24.55157 -23.21909 -22.83550 -21.32364 -21.05290 -20.72957 -18.59935 -17.64276 -17.19949 -16.93561 -16.19386 -16.12144 -15.82431 -15.38035 -15.00291 -14.78897 -14.31740 -14.23246 -13.75430 -13.58216 -13.39896 -13.17116 -12.89409 -12.75872 -12.71426 -12.61898 -12.35609 -12.30308 -12.19991 -11.99353 -11.79558 -11.69638 -11.41339 -11.12247 -10.96321 -10.83878 -9.88061 -9.15659 -9.06006 -8.30683 -6.86683 1.38318 1.39221 1.57473 2.23261 2.43892 2.75630 2.92567 3.11206 3.56909 3.75516 3.84650 3.85397 3.95783 4.04413 4.17489 4.38132 4.40739 4.46274 4.47566 4.54521 4.63180 4.70822 4.78074 4.80652 4.84769 4.85829 4.92135 5.02545 5.04605 5.05819 5.14085 5.25172 5.27251 5.30398 5.35759 5.44564 5.68502 6.04609 6.16361 6.21483 6.43955 6.84870 7.50220 8.45526 8.66415 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.003866 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.147132 B = 7240.838540 C = 7849.239167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.563 5.563 3 C 0.092 3.908 4 C -0.159 4.159 5 C -0.188 4.188 6 C -0.164 4.164 7 C 0.078 3.922 8 C -0.083 4.083 9 H 0.077 0.923 10 C -0.109 4.109 11 C 0.112 3.888 12 N -0.658 5.658 13 C 0.548 3.452 14 O -0.636 6.636 15 C -0.564 4.564 16 H 0.087 0.913 17 C 0.024 3.976 18 N -0.823 5.823 19 Si 1.002 2.998 20 H -0.245 1.245 21 H -0.267 1.267 22 H -0.267 1.267 23 C 0.135 3.865 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.275 0.725 41 H 0.036 0.964 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 16.873 11.847 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.287 5.287 3 C -0.036 4.036 4 C -0.178 4.178 5 C -0.225 4.225 6 C -0.202 4.202 7 C -0.050 4.050 8 C -0.103 4.103 9 H 0.095 0.905 10 C -0.147 4.147 11 C -0.012 4.012 12 N -0.396 5.396 13 C 0.355 3.645 14 O -0.524 6.524 15 C -0.601 4.601 16 H 0.105 0.895 17 C -0.190 4.190 18 N -0.453 5.453 19 Si 0.820 3.180 20 H -0.168 1.168 21 H -0.192 1.192 22 H -0.192 1.192 23 C 0.012 3.988 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.796 16.695 10.559 19.950 hybrid contribution -0.175 -0.525 0.060 0.557 sum -2.971 16.170 10.619 19.572 Atomic orbital electron populations 1.22420 0.87046 1.01806 1.01087 1.61814 1.08631 1.14100 1.44140 1.21640 0.99740 0.87077 0.95099 1.22308 0.99925 0.97302 0.98234 1.23050 0.96719 1.04568 0.98189 1.23041 1.03267 0.90812 1.03038 1.21985 1.00417 0.90835 0.91730 1.22290 0.99594 0.94583 0.93835 0.90496 1.22656 1.02901 0.92012 0.97124 1.21847 1.00369 0.98517 0.80427 1.48614 1.78130 1.05694 1.07133 1.18480 0.76216 0.86079 0.83755 1.90546 1.58077 1.84650 1.19107 1.21426 1.53963 0.89517 0.95148 0.89511 1.27082 0.91237 1.06608 0.94084 1.70220 1.36297 1.35736 1.03059 0.84924 0.78651 0.74380 0.80019 1.16817 1.19180 1.19171 1.21729 0.97954 0.81340 0.97807 0.94162 0.91166 0.92522 0.93292 0.90807 0.88340 0.88925 0.89326 0.87984 0.87743 0.92013 0.90343 0.89241 0.87492 0.93062 0.93024 0.91543 0.94568 0.95431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.16 127.69 1.17 1.70 16 2 N -0.56 -13.56 4.58 -922.45 -4.23 -17.79 16 3 C 0.09 1.80 5.24 86.30 0.45 2.25 16 4 C -0.16 -3.14 5.67 -10.79 -0.06 -3.20 16 5 C -0.19 -3.67 10.18 30.62 0.31 -3.36 16 6 C -0.16 -2.52 10.26 30.62 0.31 -2.21 16 7 C 0.08 1.74 4.41 86.30 0.38 2.12 16 8 C -0.08 -2.39 2.89 -9.40 -0.03 -2.42 16 9 H 0.08 2.26 6.54 -2.39 -0.02 2.25 16 10 C -0.11 -2.73 6.42 31.78 0.20 -2.53 16 11 C 0.11 4.12 6.05 86.73 0.52 4.65 16 12 N -0.66 -32.60 3.33 -816.87 -2.72 -35.31 16 13 C 0.55 34.36 7.78 86.36 0.67 35.03 16 14 O -0.64 -46.01 15.27 -4.33 -0.07 -46.07 16 15 C -0.56 -33.61 9.06 24.83 0.23 -33.38 16 16 H 0.09 4.66 7.16 -2.91 -0.02 4.64 16 17 C 0.02 1.42 5.50 85.30 0.47 1.89 16 18 N -0.82 -52.47 11.83 21.83 0.26 -52.22 16 19 Si 1.00 42.18 29.56 68.60 2.03 44.20 16 20 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 C 0.14 5.73 6.21 86.86 0.54 6.26 16 24 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.07 1.46 6.22 -2.38 -0.01 1.45 16 26 H 0.06 1.41 6.44 -2.39 -0.02 1.39 16 27 H 0.05 0.81 8.12 -2.39 -0.02 0.80 16 28 H 0.07 1.44 7.67 -2.39 -0.02 1.42 16 29 H 0.10 2.12 6.35 -2.39 -0.02 2.11 16 30 H 0.09 1.80 8.03 -2.38 -0.02 1.79 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.07 8.12 -2.39 -0.02 1.06 16 35 H 0.08 1.72 7.89 -2.39 -0.02 1.70 16 36 H 0.09 1.94 8.04 -2.39 -0.02 1.92 16 37 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 39 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.27 15.72 8.29 -92.71 -0.77 14.96 16 41 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 42 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 Total: -1.00 -81.54 336.63 1.43 -80.12 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.98 Total: 20.27 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.17 Total: 6.80 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -6.69 Total: -105.32 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -0.07 Total: -46.07 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -81.54 1.43 -80.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356744836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.424 kcal (2) G-P(sol) polarization free energy of solvation -81.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds