Wall clock time and date at job start Mon Mar 30 2020 01:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47849 * 111.00097 * 2 1 4 4 C 1.54904 * 104.89428 * 213.58160 * 3 2 1 5 5 C 1.55429 * 101.52116 * 37.06584 * 4 3 2 6 6 C 1.47445 * 111.00083 * 239.16065 * 2 1 3 7 7 H 1.09001 * 109.88773 * 242.66294 * 6 2 1 8 8 C 1.50702 * 109.88625 * 3.68684 * 6 2 1 9 9 O 1.21280 * 120.00073 * 50.66409 * 8 6 2 10 10 N 1.34774 * 120.00152 * 230.66202 * 8 6 2 11 11 C 1.46498 * 120.00223 * 184.69976 * 10 8 6 12 12 C 1.50695 * 109.47332 * 90.00266 * 11 10 8 13 13 H 1.08001 * 119.99687 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00378 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00181 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99888 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47203 * 90.00254 * 16 14 12 18 18 H 1.48503 * 109.47076 * 210.00403 * 16 14 12 19 19 H 1.48503 * 109.46847 * 330.00091 * 16 14 12 20 20 C 1.46499 * 120.00078 * 4.70242 * 10 8 6 21 21 C 1.53005 * 109.47160 * 84.37532 * 20 10 8 22 22 C 1.53008 * 117.49710 * 243.62496 * 21 20 10 23 23 C 1.52998 * 117.49715 * 175.00488 * 21 20 10 24 24 H 1.09000 * 109.47252 * 50.56289 * 1 2 3 25 25 H 1.08993 * 109.47258 * 170.56196 * 1 2 3 26 26 H 1.08999 * 109.46739 * 290.56189 * 1 2 3 27 27 H 1.09000 * 110.37553 * 332.46722 * 3 2 1 28 28 H 1.09000 * 110.37474 * 94.69656 * 3 2 1 29 29 H 1.08998 * 110.99019 * 155.22018 * 4 3 2 30 30 H 1.08998 * 110.99408 * 279.03161 * 4 3 2 31 31 H 1.09000 * 110.69253 * 205.97327 * 5 4 3 32 32 H 1.09004 * 110.84333 * 82.82896 * 5 4 3 33 33 H 1.08995 * 109.47292 * 210.00474 * 11 10 8 34 34 H 1.09001 * 109.47000 * 330.00359 * 11 10 8 35 35 H 0.97010 * 120.00137 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47487 * 204.37400 * 20 10 8 37 37 H 1.09004 * 109.47167 * 324.37989 * 20 10 8 38 38 H 1.08994 * 115.54811 * 29.32788 * 21 20 10 39 39 H 1.09001 * 117.49543 * 359.97438 * 22 21 20 40 40 H 1.08997 * 117.49697 * 145.01971 * 22 21 20 41 41 H 1.08998 * 117.49537 * 214.97698 * 23 21 20 42 42 H 1.08996 * 117.50024 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3059 1.3050 -0.8280 5 6 2.9158 0.2822 -1.9315 6 6 1.9974 -0.7056 -1.1819 7 1 2.5697 -1.5784 -0.8675 8 6 0.8609 -1.1325 -2.0747 9 8 0.0169 -0.3281 -2.4086 10 7 0.7822 -2.4083 -2.5021 11 6 -0.2625 -2.7997 -3.4515 12 6 0.2467 -2.6250 -4.8590 13 1 1.2483 -2.2586 -5.0293 14 6 -0.5664 -2.9318 -5.9294 15 7 -0.1218 -2.7798 -7.1577 16 14 -2.2990 -3.5649 -5.6349 17 1 -3.2402 -2.4182 -5.5676 18 1 -2.6934 -4.4643 -6.7489 19 1 -2.3407 -4.3154 -4.3542 20 6 1.7415 -3.4037 -2.0172 21 6 1.2618 -3.9634 -0.6764 22 6 2.1377 -3.7045 0.5512 23 6 2.0698 -5.1063 -0.0583 24 1 -0.3634 0.6528 -0.7937 25 1 -0.3633 -1.0137 -0.1685 26 1 -0.3633 0.3609 0.9622 27 1 1.2890 2.0593 -0.4723 28 1 2.2130 1.7046 1.0184 29 1 3.5503 2.2751 -1.2607 30 1 4.1309 0.9305 -0.2222 31 1 3.8000 -0.2278 -2.3137 32 1 2.3752 0.7725 -2.7411 33 1 -0.5289 -3.8439 -3.2886 34 1 -1.1419 -2.1730 -3.3029 35 1 -0.6937 -2.9961 -7.9108 36 1 1.8214 -4.2143 -2.7415 37 1 2.7170 -2.9351 -1.8871 38 1 0.1817 -3.9745 -0.5310 39 1 3.0558 -3.1359 0.4034 40 1 1.6338 -3.5452 1.5044 41 1 1.5211 -5.8691 0.4941 42 1 2.9427 -5.4597 -0.6070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356971627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:37 Heat of formation + Delta-G solvation = 10.689153 kcal Electronic energy + Delta-G solvation = -21727.734012 eV Core-core repulsion = 18709.212511 eV Total energy + Delta-G solvation = -3018.521501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36135 -37.80614 -36.91037 -34.54220 -32.51938 -31.84632 -29.78940 -28.09698 -26.24129 -25.34221 -23.09689 -22.25948 -21.17915 -20.96583 -20.57101 -18.20076 -17.18432 -16.91190 -15.89354 -15.41291 -15.02855 -14.86890 -14.57713 -14.10635 -13.94198 -13.61603 -13.10298 -12.68389 -12.46367 -12.43659 -12.07194 -11.86258 -11.56255 -11.43760 -11.40467 -11.23514 -11.02769 -10.95410 -10.86771 -10.60635 -10.51868 -10.28729 -10.11642 -9.84428 -9.54942 -9.27796 -8.61127 -8.10752 -7.61398 -6.11119 -4.10013 3.16473 3.27495 3.33509 3.35498 3.69609 3.99191 4.26993 4.37670 4.66910 4.73531 4.91615 4.98682 5.04499 5.15719 5.21963 5.30775 5.36996 5.53684 5.57662 5.68901 5.73334 5.83275 5.84900 5.86787 5.90331 6.00080 6.02239 6.03311 6.15196 6.20845 6.31174 6.38550 6.42025 6.69386 6.92388 7.03711 7.12369 7.33197 7.58784 8.21846 8.44464 8.88763 8.94738 9.49359 11.02143 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.007094 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.157330 B = 3946.095701 C = 4748.888056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.507 5.507 3 C 0.038 3.962 4 C -0.125 4.125 5 C -0.130 4.130 6 C 0.046 3.954 7 H 0.104 0.896 8 C 0.505 3.495 9 O -0.541 6.541 10 N -0.587 5.587 11 C 0.215 3.785 12 C -0.529 4.529 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.266 1.266 20 C 0.141 3.859 21 C -0.169 4.169 22 C -0.172 4.172 23 C -0.179 4.179 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.554 1.170 15.942 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.232 5.232 3 C -0.090 4.090 4 C -0.163 4.163 5 C -0.169 4.169 6 C -0.065 4.065 7 H 0.122 0.878 8 C 0.291 3.709 9 O -0.419 6.419 10 N -0.317 5.317 11 C 0.094 3.906 12 C -0.568 4.568 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.190 1.190 20 C 0.017 3.983 21 C -0.189 4.189 22 C -0.209 4.209 23 C -0.216 4.216 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.174 1.296 15.996 17.195 hybrid contribution -1.241 -0.099 -0.783 1.471 sum 4.933 1.198 15.213 16.038 Atomic orbital electron populations 1.22896 0.87231 1.02723 1.01100 1.64018 1.08999 1.14020 1.36157 1.23122 0.95755 0.89966 1.00112 1.22724 0.97557 0.99278 0.96754 1.22778 0.99168 0.96545 0.98376 1.22750 0.94996 0.98940 0.89810 0.87803 1.20660 0.86769 0.82472 0.80983 1.90619 1.41837 1.51498 1.57961 1.47924 1.32144 1.07773 1.43850 1.19671 0.87224 0.95317 0.88365 1.21320 1.02300 1.44768 0.88380 0.90773 1.24844 0.98146 0.95009 0.94930 1.69894 1.36964 1.48608 0.98076 0.86861 0.85354 0.79377 0.78182 1.19963 1.21020 1.19035 1.21080 0.91522 0.92463 0.93216 1.22899 0.98586 1.02800 0.94593 1.22995 1.01830 0.98653 0.97381 1.22928 1.02743 0.91799 1.04174 0.91637 0.91939 0.92624 0.93210 0.90300 0.90711 0.90688 0.90402 0.90280 0.95225 0.94620 0.92548 0.89155 0.91140 0.87788 0.88748 0.89065 0.89094 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.17 60.06 0.49 0.63 16 2 N -0.51 -7.55 5.44 -232.95 -1.27 -8.82 16 3 C 0.04 0.49 6.72 -2.30 -0.02 0.47 16 4 C -0.13 -1.45 7.10 -24.44 -0.17 -1.62 16 5 C -0.13 -1.90 6.47 -24.75 -0.16 -2.06 16 6 C 0.05 0.73 3.40 -67.88 -0.23 0.50 16 7 H 0.10 1.50 3.83 -51.93 -0.20 1.30 16 8 C 0.50 10.28 4.76 -10.99 -0.05 10.22 16 9 O -0.54 -12.99 13.26 5.56 0.07 -12.92 16 10 N -0.59 -12.06 2.47 -175.06 -0.43 -12.50 16 11 C 0.21 5.25 4.24 -5.20 -0.02 5.23 16 12 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 13 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 16 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 17 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 20 C 0.14 2.28 5.35 -4.04 -0.02 2.26 16 21 C -0.17 -2.32 5.90 -90.61 -0.53 -2.86 16 22 C -0.17 -1.96 9.47 -26.73 -0.25 -2.21 16 23 C -0.18 -1.98 10.25 -26.73 -0.27 -2.25 16 24 H 0.07 1.22 5.81 -51.93 -0.30 0.92 16 25 H 0.06 1.10 6.89 -51.93 -0.36 0.74 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.68 7.62 -51.93 -0.40 0.29 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 33 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 34 H 0.04 0.94 6.79 -51.93 -0.35 0.58 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 37 H 0.07 1.01 5.95 -51.93 -0.31 0.70 16 38 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.09 1.02 7.15 -51.93 -0.37 0.65 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -32.33 327.20 -9.15 -41.48 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.87 Total: 2.79 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.69 Total: -5.13 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.93 Total: -48.14 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.33 -9.15 -41.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356971627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.173 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds