Wall clock time and date at job start Mon Mar 30 2020 01:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47849 * 111.00097 * 2 1 4 4 C 1.54904 * 104.89428 * 213.58160 * 3 2 1 5 5 C 1.55429 * 101.52116 * 37.06584 * 4 3 2 6 6 C 1.47445 * 111.00083 * 239.16065 * 2 1 3 7 7 H 1.09001 * 109.88773 * 242.66294 * 6 2 1 8 8 C 1.50702 * 109.88625 * 3.68684 * 6 2 1 9 9 O 1.21280 * 120.00073 * 50.66409 * 8 6 2 10 10 N 1.34774 * 120.00152 * 230.66202 * 8 6 2 11 11 C 1.46498 * 120.00223 * 184.69976 * 10 8 6 12 12 C 1.50695 * 109.47332 * 90.00266 * 11 10 8 13 13 H 1.08001 * 119.99687 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00378 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00181 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99888 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47203 * 90.00254 * 16 14 12 18 18 H 1.48503 * 109.47076 * 210.00403 * 16 14 12 19 19 H 1.48503 * 109.46847 * 330.00091 * 16 14 12 20 20 C 1.46499 * 120.00078 * 4.70242 * 10 8 6 21 21 C 1.53005 * 109.47160 * 84.37532 * 20 10 8 22 22 C 1.53008 * 117.49710 * 243.62496 * 21 20 10 23 23 C 1.52998 * 117.49715 * 175.00488 * 21 20 10 24 24 H 1.09000 * 109.47252 * 50.56289 * 1 2 3 25 25 H 1.08993 * 109.47258 * 170.56196 * 1 2 3 26 26 H 1.08999 * 109.46739 * 290.56189 * 1 2 3 27 27 H 1.09000 * 110.37553 * 332.46722 * 3 2 1 28 28 H 1.09000 * 110.37474 * 94.69656 * 3 2 1 29 29 H 1.08998 * 110.99019 * 155.22018 * 4 3 2 30 30 H 1.08998 * 110.99408 * 279.03161 * 4 3 2 31 31 H 1.09000 * 110.69253 * 205.97327 * 5 4 3 32 32 H 1.09004 * 110.84333 * 82.82896 * 5 4 3 33 33 H 1.08995 * 109.47292 * 210.00474 * 11 10 8 34 34 H 1.09001 * 109.47000 * 330.00359 * 11 10 8 35 35 H 0.97010 * 120.00137 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47487 * 204.37400 * 20 10 8 37 37 H 1.09004 * 109.47167 * 324.37989 * 20 10 8 38 38 H 1.08994 * 115.54811 * 29.32788 * 21 20 10 39 39 H 1.09001 * 117.49543 * 359.97438 * 22 21 20 40 40 H 1.08997 * 117.49697 * 145.01971 * 22 21 20 41 41 H 1.08998 * 117.49537 * 214.97698 * 23 21 20 42 42 H 1.08996 * 117.50024 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3059 1.3050 -0.8280 5 6 2.9158 0.2822 -1.9315 6 6 1.9974 -0.7056 -1.1819 7 1 2.5697 -1.5784 -0.8675 8 6 0.8609 -1.1325 -2.0747 9 8 0.0169 -0.3281 -2.4086 10 7 0.7822 -2.4083 -2.5021 11 6 -0.2625 -2.7997 -3.4515 12 6 0.2467 -2.6250 -4.8590 13 1 1.2483 -2.2586 -5.0293 14 6 -0.5664 -2.9318 -5.9294 15 7 -0.1218 -2.7798 -7.1577 16 14 -2.2990 -3.5649 -5.6349 17 1 -3.2402 -2.4182 -5.5676 18 1 -2.6934 -4.4643 -6.7489 19 1 -2.3407 -4.3154 -4.3542 20 6 1.7415 -3.4037 -2.0172 21 6 1.2618 -3.9634 -0.6764 22 6 2.1377 -3.7045 0.5512 23 6 2.0698 -5.1063 -0.0583 24 1 -0.3634 0.6528 -0.7937 25 1 -0.3633 -1.0137 -0.1685 26 1 -0.3633 0.3609 0.9622 27 1 1.2890 2.0593 -0.4723 28 1 2.2130 1.7046 1.0184 29 1 3.5503 2.2751 -1.2607 30 1 4.1309 0.9305 -0.2222 31 1 3.8000 -0.2278 -2.3137 32 1 2.3752 0.7725 -2.7411 33 1 -0.5289 -3.8439 -3.2886 34 1 -1.1419 -2.1730 -3.3029 35 1 -0.6937 -2.9961 -7.9108 36 1 1.8214 -4.2143 -2.7415 37 1 2.7170 -2.9351 -1.8871 38 1 0.1817 -3.9745 -0.5310 39 1 3.0558 -3.1359 0.4034 40 1 1.6338 -3.5452 1.5044 41 1 1.5211 -5.8691 0.4941 42 1 2.9427 -5.4597 -0.6070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356971627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:36 Heat of formation + Delta-G solvation = -11.548676 kcal Electronic energy + Delta-G solvation = -21728.698317 eV Core-core repulsion = 18709.212511 eV Total energy + Delta-G solvation = -3019.485806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79889 -39.02504 -38.20592 -36.17887 -34.64295 -33.02044 -31.35893 -29.69418 -27.69865 -26.59612 -24.92069 -23.15464 -22.52994 -22.16280 -21.75750 -19.69554 -19.10598 -18.59364 -17.36098 -16.73824 -16.49021 -16.23775 -15.87562 -15.77460 -15.07160 -14.98129 -14.63116 -14.44388 -13.95797 -13.79941 -13.65673 -13.30379 -13.13260 -12.78247 -12.71453 -12.48270 -12.40146 -12.25018 -12.10163 -12.05589 -11.99188 -11.79516 -11.69049 -11.23244 -10.99284 -10.87207 -10.68373 -9.62690 -9.14502 -8.38261 -6.43286 1.28317 1.31645 1.40489 1.61595 2.19265 2.26559 2.95365 2.98572 3.04917 3.42748 3.65632 3.76691 3.89917 4.02829 4.10004 4.20143 4.22182 4.37038 4.44291 4.54580 4.62230 4.66242 4.70967 4.78835 4.81672 4.86361 4.89789 4.91067 5.02238 5.02328 5.08032 5.12772 5.26439 5.32212 5.37037 5.41293 5.58803 5.79560 5.92560 6.19559 6.57498 6.63049 7.16538 7.33807 8.78446 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.007094 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.157330 B = 3946.095701 C = 4748.888056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.498 5.498 3 C 0.032 3.968 4 C -0.111 4.111 5 C -0.136 4.136 6 C 0.054 3.946 7 H 0.125 0.875 8 C 0.496 3.504 9 O -0.588 6.588 10 N -0.594 5.594 11 C 0.227 3.773 12 C -0.536 4.536 13 H 0.031 0.969 14 C 0.015 3.985 15 N -0.942 5.942 16 Si 0.944 3.056 17 H -0.277 1.277 18 H -0.272 1.272 19 H -0.242 1.242 20 C 0.139 3.861 21 C -0.192 4.192 22 C -0.158 4.158 23 C -0.160 4.160 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.015 0.985 35 H 0.269 0.731 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.562 0.355 18.812 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.223 5.223 3 C -0.095 4.095 4 C -0.149 4.149 5 C -0.175 4.175 6 C -0.057 4.057 7 H 0.143 0.857 8 C 0.285 3.715 9 O -0.469 6.469 10 N -0.324 5.324 11 C 0.104 3.896 12 C -0.575 4.575 13 H 0.049 0.951 14 C -0.184 4.184 15 N -0.582 5.582 16 Si 0.767 3.233 17 H -0.203 1.203 18 H -0.196 1.196 19 H -0.165 1.165 20 C 0.017 3.983 21 C -0.211 4.211 22 C -0.194 4.194 23 C -0.197 4.197 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.224 0.461 18.901 20.240 hybrid contribution -1.481 0.208 -1.703 2.266 sum 5.743 0.669 17.198 18.144 Atomic orbital electron populations 1.22729 0.88175 1.00845 1.01295 1.64180 1.07960 1.15395 1.34756 1.23303 0.95891 0.88334 1.01988 1.22745 0.97610 0.99103 0.95412 1.22845 0.99031 0.97240 0.98424 1.22834 0.93310 1.00091 0.89430 0.85721 1.21570 0.87320 0.81761 0.80891 1.90599 1.43816 1.52676 1.59816 1.48018 1.32121 1.09099 1.43155 1.19281 0.87683 0.95531 0.87076 1.21524 1.00657 1.44332 0.90941 0.95065 1.25790 1.02915 0.95204 0.94466 1.70035 1.38944 1.50009 0.99204 0.85768 0.79079 0.78965 0.79483 1.20291 1.19649 1.16508 1.21287 0.91480 0.91285 0.94278 1.22633 0.98098 1.06130 0.94259 1.23075 1.01229 0.98909 0.96215 1.23043 1.02148 0.91650 1.02908 0.94767 0.93904 0.89988 0.94823 0.87277 0.89228 0.87855 0.88651 0.94070 0.93740 0.96655 0.92188 0.90290 0.89112 0.89588 0.87616 0.88360 0.87863 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.17 127.69 1.04 1.62 16 2 N -0.50 -13.97 5.44 -890.92 -4.85 -18.82 16 3 C 0.03 0.74 6.72 86.77 0.58 1.33 16 4 C -0.11 -2.24 7.10 32.08 0.23 -2.01 16 5 C -0.14 -3.88 6.47 31.88 0.21 -3.67 16 6 C 0.05 1.68 3.40 44.51 0.15 1.83 16 7 H 0.13 3.29 3.83 -2.39 -0.01 3.29 16 8 C 0.50 20.78 4.76 87.66 0.42 21.20 16 9 O -0.59 -29.77 13.26 -3.03 -0.04 -29.81 16 10 N -0.59 -25.04 2.47 -826.16 -2.04 -27.07 16 11 C 0.23 11.39 4.24 85.63 0.36 11.76 16 12 C -0.54 -31.99 9.94 25.60 0.25 -31.73 16 13 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 14 C 0.01 0.88 5.47 84.65 0.46 1.34 16 15 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 16 Si 0.94 45.28 27.47 68.60 1.88 47.16 16 17 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 19 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 20 C 0.14 4.41 5.35 86.38 0.46 4.87 16 21 C -0.19 -4.95 5.90 -10.79 -0.06 -5.02 16 22 C -0.16 -3.07 9.47 30.60 0.29 -2.78 16 23 C -0.16 -3.03 10.25 30.59 0.31 -2.72 16 24 H 0.03 1.32 5.81 -2.39 -0.01 1.30 16 25 H 0.04 1.52 6.89 -2.39 -0.02 1.50 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.03 0.89 7.62 -2.39 -0.02 0.88 16 28 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.04 1.48 7.75 -2.39 -0.02 1.46 16 33 H 0.04 2.09 7.13 -2.39 -0.02 2.08 16 34 H 0.02 0.83 6.79 -2.39 -0.02 0.82 16 35 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 36 H 0.08 2.64 8.03 -2.39 -0.02 2.62 16 37 H 0.09 2.45 5.95 -2.38 -0.01 2.43 16 38 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.11 1.84 7.15 -2.39 -0.02 1.83 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -74.63 327.20 0.90 -73.73 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.94 Total: 18.36 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 4.71 Total: -3.99 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -6.59 Total: -105.46 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.04 Total: -29.81 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -74.63 0.90 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356971627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.185 kcal (2) G-P(sol) polarization free energy of solvation -74.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds