Wall clock time and date at job start Mon Mar 30 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.51442 * 121.10847 * 2 1 4 4 C 1.53299 * 108.24002 * 228.99909 * 3 2 1 5 5 N 1.46833 * 109.39977 * 306.21080 * 4 3 2 6 6 C 1.46896 * 110.99960 * 189.75314 * 5 4 3 7 7 C 1.52996 * 109.47255 * 169.99576 * 6 5 4 8 8 C 1.50702 * 109.47159 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 10 8 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 10 16 16 N 1.31519 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47061 * 119.99902 * 17 15 13 20 20 H 1.48503 * 109.47075 * 240.00004 * 17 15 13 21 21 C 1.46825 * 111.56812 * 65.38597 * 5 4 3 22 22 C 1.51439 * 121.11098 * 179.97438 * 2 1 3 23 23 H 1.07997 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99869 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.70506 * 109.31559 * 3 2 1 26 26 H 1.08989 * 109.70914 * 348.68464 * 3 2 1 27 27 H 1.08995 * 109.48806 * 186.23070 * 4 3 2 28 28 H 1.09001 * 109.48385 * 66.17893 * 4 3 2 29 29 H 1.09004 * 109.47112 * 49.99568 * 6 5 4 30 30 H 1.09000 * 109.47386 * 289.99956 * 6 5 4 31 31 H 1.09004 * 109.47066 * 59.99965 * 7 6 5 32 32 H 1.08994 * 109.47405 * 299.99795 * 7 6 5 33 33 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 34 34 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 35 35 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 36 36 H 1.09001 * 109.47567 * 210.00057 * 12 10 8 37 37 H 1.09005 * 109.47076 * 330.00563 * 12 10 8 38 38 H 0.96991 * 119.99957 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.48267 * 54.59090 * 21 5 4 40 40 H 1.09001 * 109.48184 * 174.63781 * 21 5 4 41 41 H 1.09002 * 109.70637 * 250.68401 * 22 2 1 42 42 H 1.09001 * 109.70665 * 11.31249 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0924 1.2966 0.0000 4 6 3.1582 1.2139 -1.0988 5 7 3.9617 -0.0002 -0.9085 6 6 5.1332 -0.0005 -1.7948 7 6 6.0716 -1.1423 -1.3993 8 6 7.2732 -1.1429 -2.3090 9 8 7.3697 -0.3116 -3.1868 10 7 8.2435 -2.0635 -2.1431 11 6 8.1272 -3.0674 -1.0825 12 6 9.4144 -2.0604 -3.0235 13 6 10.4889 -1.1882 -2.4271 14 1 10.3170 -0.6867 -1.4861 15 6 11.6916 -1.0304 -3.0826 16 7 11.9009 -1.6407 -4.2287 17 14 13.0238 0.0502 -2.3430 18 1 12.5429 0.6196 -1.0586 19 1 14.2421 -0.7630 -2.0992 20 1 13.3451 1.1535 -3.2836 21 6 3.1582 -1.2144 -1.0982 22 6 2.0925 -1.2966 0.0006 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 2.5729 1.4359 0.9684 26 1 1.4209 2.1311 -0.2013 27 1 3.8047 2.0898 -1.0450 28 1 2.6728 1.1793 -2.0742 29 1 5.6586 0.9501 -1.7027 30 1 4.8085 -0.1376 -2.8262 31 1 5.5462 -2.0929 -1.4914 32 1 6.3964 -1.0051 -0.3680 33 1 7.6115 -3.9464 -1.4692 34 1 9.1223 -3.3512 -0.7402 35 1 7.5611 -2.6515 -0.2490 36 1 9.7906 -3.0777 -3.1314 37 1 9.1323 -1.6715 -4.0019 38 1 12.7470 -1.5299 -4.6897 39 1 2.6728 -1.1805 -2.0736 40 1 3.8047 -2.0903 -1.0438 41 1 2.5730 -1.4354 0.9691 42 1 1.4209 -2.1313 -0.2003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356981890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:58 Heat of formation + Delta-G solvation = -20.903363 kcal Electronic energy + Delta-G solvation = -20247.232841 eV Core-core repulsion = 17227.341386 eV Total energy + Delta-G solvation = -3019.891455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.46732 -38.60629 -35.17659 -34.67103 -32.62910 -31.47237 -30.89777 -28.21237 -27.15926 -25.67584 -23.81827 -23.50973 -22.11081 -20.97982 -18.53124 -18.23209 -16.59696 -16.51368 -15.50556 -15.35439 -15.19888 -15.01705 -14.71618 -14.53504 -14.06323 -13.85516 -13.29871 -13.00684 -12.56090 -12.42843 -12.21595 -12.15878 -11.99930 -11.78666 -11.55160 -11.36615 -11.13589 -10.97929 -10.88074 -10.72612 -10.56308 -10.42126 -10.14106 -9.59046 -9.29230 -8.86552 -8.42665 -8.35452 -7.61359 -6.03124 -4.07700 2.03948 3.30662 3.37734 3.41144 3.48476 3.66198 4.17298 4.46460 4.48602 4.57747 4.95723 5.04245 5.08226 5.23431 5.24262 5.27241 5.32673 5.36325 5.42832 5.53456 5.60167 5.63221 5.70898 5.77516 5.80267 5.88231 5.92419 5.96411 6.13911 6.15120 6.25385 6.40494 6.63660 7.02093 7.03750 7.09087 7.46152 7.56930 7.93715 8.25297 8.45084 8.92350 9.12774 9.57498 11.05046 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038279 B = 0.003462 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.295923 B = 8085.193429 C = 8382.324459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.083 4.083 4 C 0.060 3.940 5 N -0.542 5.542 6 C 0.073 3.927 7 C -0.135 4.135 8 C 0.504 3.496 9 O -0.546 6.546 10 N -0.603 5.603 11 C 0.084 3.916 12 C 0.244 3.756 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.054 3.946 22 C -0.083 4.083 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.262 0.738 39 H 0.034 0.966 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.001 -0.240 9.640 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.115 4.115 3 C -0.120 4.120 4 C -0.068 4.068 5 N -0.267 5.267 6 C -0.054 4.054 7 C -0.175 4.175 8 C 0.290 3.710 9 O -0.424 6.424 10 N -0.336 5.336 11 C -0.060 4.060 12 C 0.125 3.875 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.074 4.074 22 C -0.120 4.120 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.616 0.161 9.495 21.794 hybrid contribution 0.547 0.440 -0.400 0.808 sum -19.069 0.601 9.095 21.135 Atomic orbital electron populations 1.23572 0.94945 1.01676 1.04043 1.22066 0.94872 0.96252 0.98317 1.20902 0.96587 0.94548 0.99990 1.22066 0.94805 0.93086 0.96851 1.61729 1.08329 1.01888 1.54749 1.21787 0.89976 0.99691 0.93968 1.21662 0.95192 0.99824 1.00868 1.20316 0.83921 0.81588 0.85159 1.90663 1.79104 1.37619 1.35033 1.48160 1.22005 1.29932 1.33464 1.21636 1.02587 0.91418 0.90403 1.19285 0.80863 0.97301 0.90073 1.21483 0.98680 1.29008 1.07159 0.92402 1.24952 0.98479 0.95932 0.94856 1.69944 1.24912 1.43288 1.15351 0.86437 0.81376 0.80337 0.79244 1.19772 1.20971 1.20884 1.22168 0.94800 0.93601 0.96859 1.20900 0.96605 0.94527 0.99991 0.88614 0.88592 0.90020 0.91075 0.90267 0.94744 0.89780 0.94012 0.89842 0.88667 0.93875 0.90844 0.92285 0.95070 0.93896 0.92791 0.94776 0.90061 0.90011 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.69 14.01 29.02 0.41 -1.28 16 2 C -0.11 -1.06 5.42 -100.34 -0.54 -1.60 16 3 C -0.08 -0.76 6.21 -27.36 -0.17 -0.93 16 4 C 0.06 0.64 5.51 -3.71 -0.02 0.62 16 5 N -0.54 -6.49 4.58 -234.37 -1.07 -7.56 16 6 C 0.07 1.06 4.25 -3.83 -0.02 1.04 16 7 C -0.13 -2.01 4.18 -27.88 -0.12 -2.12 16 8 C 0.50 10.52 7.67 -10.98 -0.08 10.44 16 9 O -0.55 -13.82 15.56 5.55 0.09 -13.74 16 10 N -0.60 -12.95 2.86 -182.95 -0.52 -13.48 16 11 C 0.08 1.33 10.25 59.85 0.61 1.94 16 12 C 0.24 6.49 5.16 -5.20 -0.03 6.46 16 13 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 14 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 17 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.05 0.56 5.37 -3.71 -0.02 0.54 16 22 C -0.08 -0.75 6.21 -27.37 -0.17 -0.92 16 23 H 0.10 0.70 7.95 -52.49 -0.42 0.29 16 24 H 0.10 0.70 7.95 -52.49 -0.42 0.29 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.56 7.93 -51.94 -0.41 0.14 16 27 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 28 H 0.03 0.38 8.10 -51.93 -0.42 -0.04 16 29 H 0.08 1.32 7.89 -51.93 -0.41 0.91 16 30 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.08 1.06 6.31 -51.93 -0.33 0.73 16 32 H 0.10 1.32 7.40 -51.93 -0.38 0.94 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 37 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.03 0.38 8.10 -51.93 -0.42 -0.04 16 40 H 0.08 0.81 6.06 -51.93 -0.31 0.50 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.55 7.93 -51.93 -0.41 0.14 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -32.95 338.39 -8.40 -41.35 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.14 Total: -2.96 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.57 Total: 0.42 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.86 Total: -47.22 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.95 -8.40 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356981890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.449 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds