Wall clock time and date at job start Mon Mar 30 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.51442 * 121.10847 * 2 1 4 4 C 1.53299 * 108.24002 * 228.99909 * 3 2 1 5 5 N 1.46833 * 109.39977 * 306.21080 * 4 3 2 6 6 C 1.46896 * 110.99960 * 189.75314 * 5 4 3 7 7 C 1.52996 * 109.47255 * 169.99576 * 6 5 4 8 8 C 1.50702 * 109.47159 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 10 8 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 10 16 16 N 1.31519 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47061 * 119.99902 * 17 15 13 20 20 H 1.48503 * 109.47075 * 240.00004 * 17 15 13 21 21 C 1.46825 * 111.56812 * 65.38597 * 5 4 3 22 22 C 1.51439 * 121.11098 * 179.97438 * 2 1 3 23 23 H 1.07997 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99869 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.70506 * 109.31559 * 3 2 1 26 26 H 1.08989 * 109.70914 * 348.68464 * 3 2 1 27 27 H 1.08995 * 109.48806 * 186.23070 * 4 3 2 28 28 H 1.09001 * 109.48385 * 66.17893 * 4 3 2 29 29 H 1.09004 * 109.47112 * 49.99568 * 6 5 4 30 30 H 1.09000 * 109.47386 * 289.99956 * 6 5 4 31 31 H 1.09004 * 109.47066 * 59.99965 * 7 6 5 32 32 H 1.08994 * 109.47405 * 299.99795 * 7 6 5 33 33 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 34 34 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 35 35 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 36 36 H 1.09001 * 109.47567 * 210.00057 * 12 10 8 37 37 H 1.09005 * 109.47076 * 330.00563 * 12 10 8 38 38 H 0.96991 * 119.99957 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.48267 * 54.59090 * 21 5 4 40 40 H 1.09001 * 109.48184 * 174.63781 * 21 5 4 41 41 H 1.09002 * 109.70637 * 250.68401 * 22 2 1 42 42 H 1.09001 * 109.70665 * 11.31249 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0924 1.2966 0.0000 4 6 3.1582 1.2139 -1.0988 5 7 3.9617 -0.0002 -0.9085 6 6 5.1332 -0.0005 -1.7948 7 6 6.0716 -1.1423 -1.3993 8 6 7.2732 -1.1429 -2.3090 9 8 7.3697 -0.3116 -3.1868 10 7 8.2435 -2.0635 -2.1431 11 6 8.1272 -3.0674 -1.0825 12 6 9.4144 -2.0604 -3.0235 13 6 10.4889 -1.1882 -2.4271 14 1 10.3170 -0.6867 -1.4861 15 6 11.6916 -1.0304 -3.0826 16 7 11.9009 -1.6407 -4.2287 17 14 13.0238 0.0502 -2.3430 18 1 12.5429 0.6196 -1.0586 19 1 14.2421 -0.7630 -2.0992 20 1 13.3451 1.1535 -3.2836 21 6 3.1582 -1.2144 -1.0982 22 6 2.0925 -1.2966 0.0006 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 2.5729 1.4359 0.9684 26 1 1.4209 2.1311 -0.2013 27 1 3.8047 2.0898 -1.0450 28 1 2.6728 1.1793 -2.0742 29 1 5.6586 0.9501 -1.7027 30 1 4.8085 -0.1376 -2.8262 31 1 5.5462 -2.0929 -1.4914 32 1 6.3964 -1.0051 -0.3680 33 1 7.6115 -3.9464 -1.4692 34 1 9.1223 -3.3512 -0.7402 35 1 7.5611 -2.6515 -0.2490 36 1 9.7906 -3.0777 -3.1314 37 1 9.1323 -1.6715 -4.0019 38 1 12.7470 -1.5299 -4.6897 39 1 2.6728 -1.1805 -2.0736 40 1 3.8047 -2.0903 -1.0438 41 1 2.5730 -1.4354 0.9691 42 1 1.4209 -2.1313 -0.2003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356981890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:58 Heat of formation + Delta-G solvation = -42.571331 kcal Electronic energy + Delta-G solvation = -20248.172435 eV Core-core repulsion = 17227.341386 eV Total energy + Delta-G solvation = -3020.831049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82241 -39.77420 -36.65285 -35.89573 -34.73196 -32.45843 -31.88562 -29.87331 -28.32911 -27.22975 -25.30577 -24.50225 -23.43228 -22.01258 -19.90396 -19.18922 -18.70425 -17.96961 -17.10972 -16.79568 -16.32087 -16.21170 -15.78394 -15.66043 -15.30133 -15.00551 -14.43873 -14.31050 -13.87786 -13.73473 -13.49914 -13.42900 -13.33813 -13.20672 -12.95903 -12.79511 -12.62355 -12.37220 -12.21397 -12.18310 -11.97108 -11.68022 -11.55355 -11.22590 -10.65786 -10.60052 -9.96765 -9.41395 -9.30800 -8.23259 -6.38289 1.36028 1.38489 1.39403 1.50583 1.84202 2.28648 2.41868 2.95293 3.06226 3.74611 3.80082 3.90725 4.00246 4.11813 4.26226 4.36005 4.40554 4.42428 4.52875 4.56099 4.68762 4.73297 4.81695 4.88538 4.93346 4.95822 4.98785 5.00788 5.06272 5.10168 5.11964 5.22429 5.23729 5.56231 5.76414 5.84276 5.89464 6.05673 6.11553 6.13895 6.69469 6.79828 7.27704 7.48853 8.84077 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038279 B = 0.003462 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.295923 B = 8085.193429 C = 8382.324459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.136 4.136 3 C -0.077 4.077 4 C 0.056 3.944 5 N -0.539 5.539 6 C 0.081 3.919 7 C -0.114 4.114 8 C 0.494 3.506 9 O -0.602 6.602 10 N -0.611 5.611 11 C 0.078 3.922 12 C 0.257 3.743 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.268 1.268 20 H -0.282 1.282 21 C 0.050 3.950 22 C -0.078 4.078 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.024 0.976 37 H -0.004 1.004 38 H 0.267 0.733 39 H 0.026 0.974 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.175 -0.631 12.021 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.136 4.136 3 C -0.115 4.115 4 C -0.072 4.072 5 N -0.264 5.264 6 C -0.047 4.047 7 C -0.154 4.154 8 C 0.283 3.717 9 O -0.484 6.484 10 N -0.342 5.342 11 C -0.064 4.064 12 C 0.136 3.864 13 C -0.580 4.580 14 H 0.072 0.928 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.794 3.206 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.208 1.208 21 C -0.078 4.078 22 C -0.115 4.115 23 H 0.122 0.878 24 H 0.124 0.876 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.042 0.958 37 H 0.014 0.986 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.819 -0.267 11.921 23.992 hybrid contribution 0.830 0.537 -1.174 1.535 sum -19.989 0.270 10.747 22.697 Atomic orbital electron populations 1.23758 0.94693 1.02598 1.02255 1.22152 0.95361 0.96246 0.99878 1.20864 0.96182 0.95329 0.99092 1.22139 0.95112 0.92540 0.97369 1.61769 1.08098 1.03047 1.53441 1.21592 0.90946 0.98624 0.93574 1.21568 0.92443 1.01527 0.99884 1.21394 0.85019 0.80233 0.85093 1.90631 1.80432 1.39774 1.37605 1.48205 1.20611 1.31435 1.33989 1.21950 1.03245 0.91240 0.89963 1.18758 0.82470 0.96033 0.89163 1.21745 0.99636 1.29509 1.07152 0.92837 1.25896 1.00999 0.97229 0.95212 1.70060 1.25804 1.44503 1.16613 0.85339 0.78506 0.78354 0.78435 1.19036 1.19307 1.20780 1.22280 0.95233 0.93003 0.97247 1.20883 0.96272 0.95035 0.99324 0.87847 0.87595 0.90090 0.89816 0.90571 0.95405 0.91746 0.95900 0.86659 0.86563 0.91047 0.91658 0.88595 0.95841 0.98584 0.92386 0.95558 0.89195 0.89802 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.70 14.01 67.78 0.95 -1.75 16 2 C -0.14 -2.20 5.42 -16.01 -0.09 -2.28 16 3 C -0.08 -1.28 6.21 30.18 0.19 -1.09 16 4 C 0.06 1.16 5.51 86.42 0.48 1.64 16 5 N -0.54 -12.15 4.58 -895.42 -4.10 -16.25 16 6 C 0.08 2.32 4.25 86.30 0.37 2.68 16 7 C -0.11 -3.19 4.18 29.85 0.12 -3.07 16 8 C 0.49 20.74 7.67 87.66 0.67 21.41 16 9 O -0.60 -31.86 15.56 -3.04 -0.05 -31.90 16 10 N -0.61 -26.25 2.86 -851.12 -2.43 -28.68 16 11 C 0.08 2.30 10.25 127.77 1.31 3.61 16 12 C 0.26 14.19 5.16 85.63 0.44 14.63 16 13 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 14 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 15 C 0.01 0.31 5.46 84.66 0.46 0.78 16 16 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 17 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 C 0.05 0.94 5.37 86.42 0.46 1.41 16 22 C -0.08 -1.19 6.21 30.18 0.19 -1.00 16 23 H 0.10 1.24 7.95 -2.91 -0.02 1.22 16 24 H 0.11 1.23 7.95 -2.91 -0.02 1.21 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.15 7.93 -2.39 -0.02 1.13 16 27 H 0.08 1.59 7.94 -2.39 -0.02 1.57 16 28 H 0.03 0.61 8.10 -2.39 -0.02 0.59 16 29 H 0.06 2.08 7.89 -2.38 -0.02 2.06 16 30 H 0.02 0.73 8.08 -2.39 -0.02 0.71 16 31 H 0.12 2.53 6.31 -2.38 -0.02 2.51 16 32 H 0.12 2.84 7.40 -2.39 -0.02 2.82 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 35 H 0.10 2.12 6.43 -2.39 -0.02 2.10 16 36 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 37 H 0.00 -0.25 7.42 -2.38 -0.02 -0.27 16 38 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 39 H 0.03 0.54 8.10 -2.39 -0.02 0.52 16 40 H 0.09 1.51 6.06 -2.39 -0.01 1.50 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 1.06 7.93 -2.39 -0.02 1.04 16 Total: -1.00 -74.25 338.39 2.50 -71.75 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.97 Total: 8.99 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.79 Total: 5.38 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -6.25 Total: -101.72 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.05 Total: -31.90 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.25 2.50 -71.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356981890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.182 kcal (2) G-P(sol) polarization free energy of solvation -74.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds